ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C11543

H2O

C14074

prenyl diphosphate

C12364

isopentenyl diphosphate

C12394

6-phospho D-glucono-1,5-lactone

C928

CO2

C3656

D-gluconate 6-phosphate

C1268

(R)-4'-phosphopantothenate

C11800

(R)-pantothenate

C11479

phosphoenolpyruvate

C10349

glycerone phosphate

C6614

O-ureido-L-homoserine

C2191

carbamoyl phosphate

C13627

DNA without lesion

C11802

4'-phosphopantetheine

C13985

(R)-5-phosphomevalonate

C11964

(R)-mevalonate

C13879

(R)-mevalonate diphosphate

C11483

glycolate

C11493

2-phosphoglycolate

C873

coproporphyrinogen III

C11857

β-nicotinate D-ribonucleotide

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C1108

acetyl phosphate

C13738

cis-coumarinic acid-β-D-glucoside

C11662

scopolin

C1297

4-hydroxybenzaldehyde

C451

4-methylumbelliferyl glucoside

C142

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

C12029

S-ribosyl-L-homocysteine

C15238

5-deoxy-α-ribose 1-phosphate

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C1196

S-methyl-5'-thioadenosine

C13946

5-(methylsulfanyl)-α-D-ribose

C3344

2-dehydro-3-deoxy-D-gluconate

C1249

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

C9422

nicotinate adenine dinucleotide

C12324

autoinducer 2

C12162

hydrogen peroxide

C15282

D-galactosamine-6-phosphate

C11932

N-acetyl-D-galactosamine 6-phosphate

C12492

1,6-anhydro-N-acetyl-β-muramate

C12494

N-acetyl-D-muramate 6-phosphate

C12218

α-D-glucosamine 1-phosphate

C352

2-iminoacetate

C1503

2-dehydro-3-deoxy-D-gluconate 6-phosphate

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C11715

quinolinate

C1010

ammonia

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C11606

thiamine phosphate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C12056

L-arginino-succinate

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C1434

D-alanyl-D-alanine

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C6596

2-iminosuccinate

C5597

L-alanine

C12067

glycine

C5588

L-leucine

C5583

L-methionine

C5612

L-cysteine

C5607

L-glutamate

C5609

L-glutamine

C5642

L-arginine

C5596

L-aspartate

C5579

L-serine

C12231

L-ornithine

C5573

L-tyrosine

C12303

L-citrulline

C12203

S-adenosyl-L-homocysteine

C15292

S-adenosyl-L-methionine

C12237

L-canaline

C12247

L-homocysteine

C5585

meso-diaminopimelate

C8799

D-alanine

C8797

D-glutamate

C7809

AMP

C7827

GMP

C7811

XMP

C7844

ATP

C7741

IMP

C7757

ADP

C7795

GDP

C7745

GTP

C7823

dADP

C7783

dATP

C7807

dGDP

C7751

dGTP

C7652

cyclic-AMP

C5552

5'-deoxyadenosine

C7749

dITP

C7747

dIDP

C7759

ITP

C7817

IDP

C10266

ppGpp

C10288

adenylo-succinate

C10267

pppGpp

C7848

2'-deoxyguanosine

C7813

2'-deoxyadenosine

C7840

dGMP

C7743

dAMP

C1009

GDP-α-D-mannose

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7822

UDP-N-acetyl-α-D-muramate

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7780

UDP-α-D-glucose

C7444

UDP-N-acetyl-α-D-glucosamine

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C9454

adenine

C9540

preQ1

C8755

dCMP

C8744

dTMP

C8770

dUMP

C8733

dCDP

C8720

dTDP

C8752

dUDP

C8724

dUTP

C8772

dCTP

C8764

dTTP

C8732

CDP

C8714

UDP

C4243

β-nicotinamide D-ribonucleotide

C8761

CTP

C8760

UTP

C2245

CMP

C2241

UMP

C4020

NAD+

C4018

NADP+

C14500

NADH

C14497

NADPH

C2527

2'-deoxyuridine

C2519

thymidine

C2523

2'-deoxycytidine

C15088

adenosine

C2702

cytidine

C2706

uridine

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C13376

lotaustralin

C13392

linamarin

C13404

neolinustatin

C13380

linustatin

C13426

taxiphyllin

C10338

5-phospho-α-D-ribose 1-diphosphate

C8813

α-D-mannose 1-phosphate

C8811

α-D-glucopyranose 1-phosphate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2989

β-D-fructofuranose 6-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C2123

β-D-glucose 6-phosphate

C2125

α-D-glucose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C6719

β-D-mannopyranose 6-phosphate

C2057

α-D-ribose-1-phosphate

C8704

D-xylulose 5-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C10604

D-ribulose 5-phosphate

C5615

D-glyceraldehyde 3-phosphate

C6673

sucrose 6F-phosphate

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C10374

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

C10379

a peptidoglycan dimer (E. faeciums)

C10372

a peptidoglycan dimer (S. aureus)

C10381

a peptidoglycan dimer (mycobacteria)

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C3122

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C3131

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C361

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

C13230

a peptidoglycan dimer (meso-diaminopimelate containing)

C10383

a peptidoglycan with L,D cross-links (mycobacteria)

C10364

a peptidoglycan with D,D cross-links (mycobacteria)

C14587

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

C14591

a peptidoglycan with D,D cross-link (S. aureus)

C3743

4-deoxy-L-threo-hex-4-enopyranuronate

C8835

β-D-fructofuranose

C6190

aldehydo-L-arabinose

C2065

aldehydo-D-ribose

C2062

β-D-ribofuranose

C2061

α-D-ribofuranose

C2108

β-D-galactopyranose

C2140

β-D-mannopyranose

C7085

β-D-glucopyranose

C7087

α-D-glucopyranose

C2141

aldehydo-D-mannose

C9494

D-glyceraldehyde

C2143

D-xylulose

C15288

N-acetylmuramate

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C5286

N-acetyl-β-D-glucosamine

C3731

glycerol

C6555

galactitol

C6561

D-mannitol

C427

L-arabinitol

C6917

β-D-cellobiose

C10688

maltotriose

C10693

sucrose

C10690

maltopentaose

C10691

maltohexaose

C10689

maltotetraose

C10692

maltoheptaose

C10621

4-methylumbelliferone

C4615

scopoletin

C4655

coumarin

C9077

(2E,6E)-farnesyl diphosphate

C9304

trans,octacis-decaprenyl phosphate

C9075

mono-trans,octa-cis-decaprenyl diphosphate

C8322

di-trans,octa-cis-undecaprenyl phosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C5383

all-trans-octaprenyl diphosphate

C3117

dioleoyl phosphatidate

C2765

1-oleoyl-2-lyso-glycerone phosphate

C6241

1-oleoyl-sn-glycerol 3-phosphate

C10527

myo-inositol

C13576

1D-myo-inositol 1-monophosphate

C13573

1D-myo-inositol 3-monophosphate

C6090

methylglyoxal

C6246

(S)-lactaldehyde

C3308

pyruvate

C3351

glyoxylate

C11517

acetate

C2774

pristanate

C3383

palmitate

C3409

octanoate

C3412

decanoate

C3418

butanoate

C6379

linoleate

C13210

oleate

C10572

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

C10590

α-linolenate

C13260

phytenate

C13266

(15Z)-tetracosenoate

C3421

formate

C6186

(S)-lactate

C6185

(R)-lactate

C6443

fumarate

C2569

coumarinate

C6043

4-methylphenol

C13422

hydrogen cyanide

C13354

preQ0

C13330

(2R)-2-hydroxy-2-methylbutanenitrile

C4190

2-hydroxy-2-methylpropanenitrile

C7129

5,6,7,8-tetrahydrofolate

C7134

tetrahydropteroyl tri-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C4599

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

C10597

7,8-dihydrofolate monoglutamate

C10982

nicotinate

C10996

nicotinamide

C4210

pyridoxal 5'-phosphate

C4200

pyridoxal

C4188

pyridoxamine 5'-phosphate

C4216

pyridoxamine

C4214

pyridoxine 5'-phosphate

C4208

pyridoxine

C10614

coenzyme A

C5394

(R)-NADHX

C5392

(S)-NADHX

C4937

3'-dephospho-CoA

C4981

CoA-disulfide

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C5298

acetyl-CoA

C5056

linoleoyl-CoA

C4915

α-linolenoyl-CoA

C5314

2-methylacetoacetyl-CoA

C5635

oleoyl-CoA

C2008

acetoacetyl-CoA

C2009

3-oxopentanoyl-CoA

C5892

palmitoyl-CoA

C2873

pristanoyl-CoA

C14677

octanoyl-CoA

C14697

decanoyl-CoA

C1177

propanoyl-CoA

C1175

butanoyl-CoA

C7168

(Z)-15-tetracosenoyl-CoA

C10774

(3R)-3-hydroxybutanoyl-CoA

C11400

phytenoyl-CoA

C1337

crotonyl-CoA

C8033

5-amino-4-imidazolecarboxyamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8958

superoxide

C7036

hydrogencarbonate

C6097

phosphate

C6093

diphosphate

C4320

H+

C4328

ammonium

C11023

Fe2+

C1689

trimethyl sulfonium

C4734

dimethyl sulfide

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C6617

N-acetyl-D-mannosamine 6-phosphate

C2017

α-D-glucosamine 6-phosphate

C6437

3-phospho-D-glyceroyl-phosphate

C6427

2,3-diphospho-D-glycerate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C8419

sn-glycerol 3-phosphate

C7121

oxygen

C7666

protoporphyrinogen IX

C7658

uroporphyrinogen-III

C7676

protoporphyrin IX

C6624

protoheme

C10799

DNA with lesion