ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C11479

phosphoenolpyruvate

C928

CO2

C6444

oxaloacetate

C11543

H2O

C11826

oxalosuccinate

C3417

(S)-3-methyl-2-oxopentanoate

C3319

4-methyl-2-oxopentanoate

C3262

3-methyl-2-oxobutanoate

C12044

L-histidinol phosphate

C12125

imidazole acetol-phosphate

C11946

N-(5-phosphoribosyl)-anthranilate

C891

citrate

C13850

hydrogenobyrinate a,c-diamide

C12056

L-arginino-succinate

C932

canavaninosuccinate

C6614

O-ureido-L-homoserine

C1530

(2R,3S)-3-isopropylmalate

C13417

2-isopropylmaleate

C1438

(2S)-2-isopropylmalate

C3259

2-oxovalerate

C506

3-ethylmalate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C6359

(S)-2-acetolactate

C6369

(S)-2-aceto-2-hydroxybutanoate

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C11639

succinate semialdehyde

C1268

(R)-4'-phosphopantothenate

C11800

(R)-pantothenate

C11557

urocanate

C1285

4-imidazolone-5-propanoate

C13281

1,4-dihydroxy-2-naphthoyl-CoA

C13824

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

C1231

5-aminolevulinate

C12214

(S)-4-amino-5-oxopentanoate

C142

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

C12162

hydrogen peroxide

C11832

orotidine 5'-phosphate

C10349

glycerone phosphate

C1108

acetyl phosphate

C11604

thiamine diphosphate

C1552

2-(α-hydroxyethyl)thiamine diphosphate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C1184

5-phospho-β-D-ribosylamine

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C1102

O-acetyl-L-serine

C13854

hydrogen selenide

C12218

α-D-glucosamine 1-phosphate

C1325

4-amino-4-deoxychorismate

C188

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

C194

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

C873

coproporphyrinogen III

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C12176

histidinol

C12178

histidinal

C12390

D-erythro-imidazole-glycerol-phosphate

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C2191

carbamoyl phosphate

C12394

6-phospho D-glucono-1,5-lactone

C3656

D-gluconate 6-phosphate

C6099

lipid IVA

C10794

lipid A disaccharide (E. coli)

C933

L-canavanine

C11930

N-acetylglutamyl-phosphate

C13627

DNA without lesion

C13793

(2R,3S)-3-methylmalate

C1491

citraconate

C3322

(4Z)-2-oxohept-4-enedioate

C13672

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

C1353

3-phosphooxypyruvate

C11874

N-succinyl-2-amino-6-ketopimelate

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C14074

prenyl diphosphate

C12364

isopentenyl diphosphate

C14185

(1R,2S)-cyclohexa-3,5-diene-1,2-diol

C912

chloroacetaldehyde

C12254

ethanolamine

C13683

2-hydroxy-5-carboxymethylmuconate semialdehyde

C3353

(4S)-4-hydroxy-2-oxoheptanedioate

C11760

prephenate

C1265

4-phosphooxy-L-threonine

C3343

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C12848

N5-carboxyaminoimidazole ribonucleotide

C11857

β-nicotinate D-ribonucleotide

C927

carbon monoxide

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C6349

3-oxopropanoate

C11873

N-succinyl-L,L-2,6-diaminopimelate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C6361

acetoacetate

C1631

3-amino-1-hydroxyacetone 1-phosphate

C1548

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

C12164

H2

C12129

hypotaurine

C949

lipid X

C13851

hydrogenobyrinate

C12324

autoinducer 2

C12029

S-ribosyl-L-homocysteine

C12352

(S)-dihydroorotate

C11652

shikimate 3-phosphate

C12369

3-dehydroquinate

C1431

3-dehydroshikimate

C11653

shikimate

C1417

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

C3376

(S)-4-hydroxy-2-oxohexanoate

C193

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

C187

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

C186

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

C185

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

C183

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

C184

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

C1002

anthranilate

C1010

ammonia

C7865

urea

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C8498

N-acetyl-L-glutaminyl-L-glutamine amide

C8496

N-acetyl-L-glutaminyl-L-glutamine

C6599

2-iminobutanoate

C6708

2-iminopropanoate

C3536

L-α-amino-ε-keto-pimelate

C5597

L-alanine

C5603

L-isoleucine

C5588

L-leucine

C5571

L-valine

C12067

glycine

C5592

L-selenocysteine

C5575

L-tryptophan

C5583

L-methionine

C5612

L-cysteine

C5607

L-glutamate

C5596

L-aspartate

C5609

L-glutamine

C5577

L-threonine

C5579

L-serine

C5584

L-lysine

C5595

L-cystathionine

C5643

L-asparagine

C5605

L-histidine

C5642

L-arginine

C12231

L-ornithine

C12073

L-aspartyl-4-phosphate

C5580

L,L-diaminopimelate

C5573

L-tyrosine

C13322

N-carbamoyl-L-aspartate

C12303

L-citrulline

C12247

L-homocysteine

C12229

O-phospho-L-homoserine

C15292

S-adenosyl-L-methionine

C12203

S-adenosyl-L-homocysteine

C2426

S-sulfo-L-cysteine

C12239

L-aspartate 4-semialdehyde

C12245

L-homoserine

C12237

L-canaline

C12227

O-succinyl-L-homoserine

C5585

meso-diaminopimelate

C11955

O-acetyl-L-homoserine

C14973

N-acetyl-L-glutamate

C3402

3-phospho-L-serine

C11433

(S)-3-amino-2-methylpropanoate

C7795

GDP

C7745

GTP

C7817

IDP

C7759

ITP

C10288

adenylo-succinate

C7741

IMP

C7757

ADP

C7823

dADP

C7807

dGDP

C7809

AMP

C7827

GMP

C7811

XMP

C7844

ATP

C5552

5'-deoxyadenosine

C7783

dATP

C7751

dGTP

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C7749

dITP

C7747

dIDP

C10266

ppGpp

C10267

pppGpp

C7848

2'-deoxyguanosine

C7813

2'-deoxyadenosine

C7840

dGMP

C7743

dAMP

C10263

ADP-α-D-glucose

C1009

GDP-α-D-mannose

C1939

dTDP-α-D-glucose

C7804

UDP-α-D-galactofuranose

C8666

UDP-α-D-galactose

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7780

UDP-α-D-glucose

C7776

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

C7814

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

C7782

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

C7444

UDP-N-acetyl-α-D-glucosamine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C9454

adenine

C8739

uracil

C1817

cyclic di-3',5'-guanylate

C8744

dTMP

C8770

dUMP

C8755

dCMP

C8733

dCDP

C8752

dUDP

C8720

dTDP

C8724

dUTP

C8772

dCTP

C8764

dTTP

C8732

CDP

C8714

UDP

C9443

2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA

C9444

2-sulfanyl-N6-dimethylallyladenosine37 in tRNA

C8760

UTP

C8761

CTP

C2241

UMP

C2245

CMP

C4018

NADP+

C4020

NAD+

C14497

NADPH

C14500

NADH

C15088

adenosine

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10340

D-erythrose 4-phosphate

C10356

4-phospho-D-erythronate

C8811

α-D-glucopyranose 1-phosphate

C8813

α-D-mannose 1-phosphate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C2989

β-D-fructofuranose 6-phosphate

C15303

D-fructose 6-phosphate

C2123

β-D-glucose 6-phosphate

C2125

α-D-glucose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C6719

β-D-mannopyranose 6-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C10604

D-ribulose 5-phosphate

C5615

D-glyceraldehyde 3-phosphate

C6673

sucrose 6F-phosphate

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C3127

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

C3126

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

C8835

β-D-fructofuranose

C7085

β-D-glucopyranose

C7087

α-D-glucopyranose

C9494

D-glyceraldehyde

C3731

glycerol

C10688

maltotriose

C10693

sucrose

C10691

maltohexaose

C10692

maltoheptaose

C10690

maltopentaose

C10689

maltotetraose

C9304

trans,octacis-decaprenyl phosphate

C9077

(2E,6E)-farnesyl diphosphate

C8322

di-trans,octa-cis-undecaprenyl phosphate

C2760

3,4-dihydroxyphenylacetate

C2768

catechol

C3450

ethanol

C6090

methylglyoxal

C3500

acetaldehyde

C3523

1-propanal

C10048

caldariellaquinone

C3308

pyruvate

C3301

2-oxoglutarate

C3257

2-oxobutanoate

C3351

glyoxylate

C8974

4-aminobenzoate

C11517

acetate

C11481

orotate

C2774

pristanate

C3409

octanoate

C3412

decanoate

C3383

palmitate

C3387

stearate

C10590

α-linolenate

C10572

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

C13210

oleate

C6379

linoleate

C13266

(15Z)-tetracosenoate

C13260

phytenate

C3421

formate

C3420

propanoate

C6185

(R)-lactate

C6186

(S)-lactate

C8534

cis-aconitate

C8531

D-threo-isocitrate

C8950

chorismate

C6443

fumarate

C6442

succinate

C2802

(S)-malate

C7019

benzene

C1869

caldariellaquinol

C1867

3-demethylubiquinol-8

C1863

demethylmenaquinol-8

C1680

menaquinol-8

C5543

ubiquinol-8

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C12730

7,8-dihydroneopterin 3'-triphosphate

C7129

5,6,7,8-tetrahydrofolate

C7134

tetrahydropteroyl tri-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C4599

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

C10597

7,8-dihydrofolate monoglutamate

C10053

FAD

C10052

FMN

C10050

FADH2

C10049

FMNH2

C2300

precorrin-5

C2320

precorrin-4

C2302

precorrin-3A

C2314

precorrin-3B

C2308

precorrin-6A

C2311

precorrin-2

C2305

precorrin-1

C2317

precorrin-6B

C2297

precorrin-8x

C2323

precorrin-7

C10982

nicotinate

C4210

pyridoxal 5'-phosphate

C4214

pyridoxine 5'-phosphate

C10614

coenzyme A

C5394

(R)-NADHX

C5392

(S)-NADHX

C11516

glycine betaine

C4901

succinyl-CoA

C5298

acetyl-CoA

C4915

α-linolenoyl-CoA

C5056

linoleoyl-CoA

C4913

malonyl-CoA

C5260

(+)-7-epi-jasmonoyl-CoA

C4911

methylacrylyl-CoA

C4922

isobutanoyl-CoA

C11197

(S)-3-hydroxy-isobutanoyl-CoA

C5635

oleoyl-CoA

C2008

acetoacetyl-CoA

C5892

palmitoyl-CoA

C5885

stearoyl-CoA

C2873

pristanoyl-CoA

C14677

octanoyl-CoA

C14697

decanoyl-CoA

C1177

propanoyl-CoA

C7168

(Z)-15-tetracosenoyl-CoA

C11400

phytenoyl-CoA

C5920

(R)-methylmalonyl-CoA

C5919

(S)-methylmalonyl-CoA

C6218

(+)-7-epi-jasmonate

C4572

(25S)-3-oxocholest-4-en-26-oyl-CoA

C4520

(25S)-3-oxocholest-4-en-26-oate

C10542

androst-4-ene-3,17-dione

C10538

androsta-1,4-diene-3,17-dione

C10545

9α-hydroxyandrosta-1,4-diene-3,17-dione

C10544

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

C10548

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

C8014

phosphoribulosylformimino-AICAR-phosphate

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C11281

2-chloroacetate

C11222

sn-glycero-3-phosphoethanolamine

C11219

glycerophosphoserine

C11220

glycerophosphoglycerol

C2169

betaine aldehyde

C6526

(2Z)-2-aminobut-2-enoate

C6524

2-aminoprop-2-enoate

C8958

superoxide

C7036

hydrogencarbonate

C7024

thiosulfate

C7030

nitrate

C7028

nitrite

C7016

sulfite

C7034

hydrogensulfite

C6097

phosphate

C6093

diphosphate

C4320

H+

C4328

ammonium

C11006

Co2+

C11023

Fe2+

C12631

2-sulfinoacetaldehyde

C3998

methanethiol

C6290

(S)-3-hydroxy-isobutanoate

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C6741

(S)-methylmalonate-semialdehyde

C6763

(R)-methylmalonate-semialdehyde

C6755

(R)-citramalate

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C6437

3-phospho-D-glyceroyl-phosphate

C6427

2,3-diphospho-D-glycerate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C8419

sn-glycerol 3-phosphate

C10789

trans,octacis-decaprenylphospho-β-D-erythro-pentofuranosid-2-ulose

C10790

trans,octacis-decaprenylphospho-β-D-ribofuranose

C7118

hydrogen sulfide

C7121

oxygen

C7666

protoporphyrinogen IX

C7658

uroporphyrinogen-III

C7676

protoporphyrin IX

C6624

protoheme

C9828

cob(II)yrinate a,c-diamide

C10799

DNA with lesion