an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

enol-phenylpyruvate

ammonia

octadecanal

pseudouridine

(S)-4-amino-5-oxopentanoate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

carbamoyl phosphate

L-arginino-succinate

2-iminoacetate

4-amino-4-deoxychorismate

CDP-glycerol

salicyl alcohol

methylsalicylate

DNA without lesion

3-deoxy-D-manno-octulosonate 8-phosphate

N-acetylglutamyl-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

oxalosuccinate

lipid X

acetyl phosphate

3-deoxy-α-D-manno-2-octulosonate

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

glycerone phosphate

succinate semialdehyde

4-hydroxy-2-nonenal

hydrogen peroxide

dihydrolipoamide

S-acetyldihydrolipoamide

isopentenyl diphosphate

prenyl diphosphate

preuroporphyrinogen

porphobilinogen

adenosine 3',5'-bisphosphate

phosphoenolpyruvate

acetoacetate

cis-coumarinic acid-β-D-glucoside

scopolin

4-hydroxybenzaldehyde

4-methylumbelliferyl glucoside

lipid A disaccharide (E. coli)

lipid IV_A

5-methylcytosine

5-aminolevulinate

oxaloacetate

citrate

pseudouridine 5'-phosphate

N-succinyl-L,L-2,6-diaminopimelate

H₂O

coproporphyrinogen III

CO₂

(2E,6E)-farnesyl diphosphate

L-homocysteine

4-methylphenol

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

protoheme

hydrogen cyanide

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

oxygen

sn-glycerol 3-phosphate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

1-oleoyl-2-lyso-glycerone phosphate

5,10-methenyltetrahydrofolate mono-L-glutamate

3-(all-trans-octaprenyl)benzene-1,2-diol

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

superoxide

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

dimethyl sulfide

glutathione

L-cysteate

3-sulfopyruvate

trimethyl sulfonium

hydrogencarbonate

chloride

phosphate

triphosphate

diphosphate

Fe²⁺

H⁺

ammonium

(2Z)-2-aminobut-2-enoate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

heptadecane

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3'-dephospho-CoA

2-methylacetoacetyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

malonyl-CoA

succinyl-CoA

acetyl-CoA

(S)-methylmalonyl-CoA

crotonyl-CoA

oleoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

butanoyl-CoA

propanoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

all-trans-retinyl palmitate

(S)-NADHX

(R)-NADHX

NADPH

NADH

NAD⁺

NADP⁺

ubiquinol-10

ubiquinol-7

ubiquinol-9

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-9

3-demethylubiquinol-8

coenzyme A

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

all-trans-retinol

7,8-dihydroneopterin 3'-triphosphate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

2'-deoxyadenosine

2'-deoxyguanosine

dAMP

dGMP

dITP

dATP

dGTP

dIDP

dGDP

dADP

adenosine tetraphosphate

IDP

GDP

ADP

IMP

XMP

GMP

AMP

ITP

GTP

ATP

dTTP

dCTP

dUTP

dUMP

CTP

dUDP

dCMP

dCDP

UDP

CDP

UTP

dTMP

dTDP

cytosine

uracil

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

5-fluorouracil

thymine

CMP

UMP

preQ₁

coumarin

scopoletin

4-methylumbelliferone

preQ₀

neolinustatin

lotaustralin

linustatin

linamarin

taxiphyllin

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

protocatechuate

coumarinate

salicylate

4-aminobenzoate

L-α-amino-ε-keto-pimelate

L-serine

L-leucine

L-glutamine

glycine

L-alanine

D-glutamate

L-glutamate

L-arginine

L-lysine

L-aspartate

L-threonine

L-tyrosine

L-phenylalanine

D-alanine

L-aspartyl-4-phosphate

N-acetyl-L-glutamate

L-citrulline

L-isoleucine

L-valine

L-homoserine

L-ornithine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

L-methionine

L,L-diaminopimelate

chorismate

fumarate

succinate

(S)-malate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

pyruvate

acetate

formate

butanoate

3-oxoadipate

palmitate

3-phenyl-2-oxopropanoate

glyoxylate

2-oxoglutarate

2-oxobutanoate

β-D-glucopyranose

α-D-glucopyranose

methanol

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

di-trans,octa-cis-undecaprenyl phosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

β-D-cellobiose

N-acetyl-α-D-glucosamine 1-phosphate

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

α-D-mannose 1-phosphate

adenylo-succinate

5'-deoxyadenosine

pppGpp

ppGpp

5-fluorocytosine

adenosine pentaphosphate

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-iminobutanoate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

D-alanyl-D-alanine