an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

acetyl phosphate

octadecanal

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

α-D-glucosamine 1-phosphate

2-iminoacetate

(S)-4-amino-5-oxopentanoate

carbamoyl phosphate

L-arginino-succinate

glycerone phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

oxalosuccinate

4-hydroxy-2-nonenal

carbonic acid

succinate semialdehyde

2,6-dioxo-6-phenylhexa-3-enoate

2-oxopent-4-enoate

4-methylumbelliferyl glucoside

4-hydroxybenzaldehyde

scopolin

cis-coumarinic acid-β-D-glucoside

N-acetylglutamyl-phosphate

salicyl alcohol

methylsalicylate

DNA without lesion

CDP-glycerol

hydrogen peroxide

N-succinyl-L,L-2,6-diaminopimelate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

lipid IV_A

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

3-deoxy-D-manno-octulosonate 8-phosphate

isopentenyl diphosphate

prenyl diphosphate

adenosine 3',5'-bisphosphate

phosphoenolpyruvate

lipid X

lipid A disaccharide (E. coli)

5-aminolevulinate

porphobilinogen

preuroporphyrinogen

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

3-deoxy-α-D-manno-2-octulosonate

3-demethylubiquinol-6

oxaloacetate

citrate

H₂O

coproporphyrinogen III

CO₂

enol-phenylpyruvate

ammonia

(3E)-2-oxopent-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

(2E,6E)-farnesyl diphosphate

4-methylphenol

L-homocysteine

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

protoheme

hydrogen cyanide

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

oxygen

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

1-oleoyl-2-lyso-glycerone phosphate

5,10-methenyltetrahydrofolate mono-L-glutamate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

superoxide

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

dimethyl sulfide

glutathione

L-cysteate

3-sulfopyruvate

trimethyl sulfonium

hydrogencarbonate

chloride

phosphate

diphosphate

Fe³⁺

Fe²⁺

Zn²⁺

Mn²⁺

H⁺

ammonium

(2Z)-2-aminobut-2-enoate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

heptadecane

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

3'-dephospho-CoA

malonyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

succinyl-CoA

acetyl-CoA

oleoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

acetoacetyl-CoA

all-trans-retinyl palmitate

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinol

ubiquinol-10

ubiquinol-7

ubiquinol-6

ubiquinol-8

ubiquinol-9

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

caldariellaquinone

coenzyme A

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

menadione

all-trans-retinol

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

2'-deoxyadenosine

2'-deoxyguanosine

dAMP

dGMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

XMP

IMP

GMP

AMP

ITP

GTP

ATP

dUDP

dTTP

dCTP

dCMP

dCDP

CDP

UDP

dUTP

dUMP

UTP

CTP

dTMP

dTDP

UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose

UDP-2-acetamido-2,6-dideoxy-β-L-lyxo-4-hexulose

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-N-acetyl-β-L-pneumosamine

UDP-N-acetyl-β-L-fucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

CMP

UMP

preQ₁

scopoletin

coumarin

4-methylumbelliferone

taxiphyllin

linustatin

neolinustatin

linamarin

lotaustralin

preQ₀

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

menadiol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

protocatechuate

coumarinate

salicylate

4-aminobenzoate

benzoate

L-α-amino-ε-keto-pimelate

L-serine

L-leucine

L-glutamine

glycine

L-alanine

D-glutamate

L-glutamate

L-arginine

L-lysine

L-aspartate

L-tyrosine

L-threonine

L-phenylalanine

D-alanine

L-aspartyl-4-phosphate

N-formyl-L-methionine

N-acetyl-L-glutamate

L-citrulline

L-valine

L-isoleucine

L-homoserine

L-ornithine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

L-methionine

L,L-diaminopimelate

succinate

fumarate

(S)-malate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

(R)-lactate

pyruvate

acetate

formate

3-oxoadipate

palmitate

3-phenyl-2-oxopropanoate

glyoxylate

2-oxobutanoate

2-oxoglutarate

β-D-glucopyranose

α-D-glucopyranose

methanol

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-decaprenyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-nonaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

β-D-cellobiose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (mycobacteria)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

D-glyceraldehyde 3-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

α-D-mannose 1-phosphate

pppGpp

adenylo-succinate

ppGpp

5'-deoxyadenosine

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

two adjacent thymidines in DNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-iminobutanoate

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

D-alanyl-D-alanine