an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

ammonia

carboxyphosphate

(S)-dihydroorotate

N-succinyl-L,L-2,6-diaminopimelate

N⁵-carboxyaminoimidazole ribonucleotide

quinolinate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

D-gluconate 6-phosphate

L-histidinol phosphate

histidinol

xanthine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-phospho-β-D-ribosylamine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N¹-(5-phospho-β-D-ribosyl)glycinamide

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

α-D-glucosamine 1-phosphate

S-ribosyl-L-homocysteine

autoinducer 2

chloroacetaldehyde

ethanolamine

glycolate

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

prenyl diphosphate

oxaloacetate

CO₂

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

isopentenyl diphosphate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

3-deoxy-D-arabino-heptulosonate 7-phosphate

phosphoenolpyruvate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate

shikimate 3-phosphate

3-dehydroquinate

3-dehydroshikimate

carbamoyl phosphate

O-ureido-L-homoserine

acetyl phosphate

dihydroxyacetone

orotidine 5'-phosphate

hydrogen peroxide

DNA without lesion

glycerone phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N-acetyl-D-muramate 6-phosphate

H₂O

DNA with lesion

L-homocysteine

Mg-protoporphyrin

protoporphyrin IX

oxygen

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

α-D-glucosamine 6-phosphate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

(2E,6E)-farnesyl diphosphate

H⁺

ammonium

Mg²⁺

hydrogencarbonate

phosphate

diphosphate

chloride

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

D-alanyl-D-lactate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

4-aminobenzoate

preQ₀

coenzyme A

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

pyridoxal

pyridoxal 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

succinyl-CoA

isobutanoyl-CoA

acetyl-CoA

3'-dephospho-CoA

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

chorismate

succinate

fumarate

L-aspartate

acetate

formate

pyruvate

(R)-lactate

orotate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

L-leucine

glycine

L-glutamine

L-alanine

D-glutamate

L-glutamate

L-lysine

L-tyrosine

D-alanine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

L,L-diaminopimelate

L-threonine

L-ornithine

L-methionine

L-citrulline

L-homoserine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-homocysteine

L-canaline

S-adenosyl-L-methionine

meso-diaminopimelate

2-oxobutanoate

2-oxoglutarate

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

glycerol

ethanol

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-α-D-glucose

ADP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

acetaldehyde

isobutanal

dCTP

dTTP

dTDP

dUDP

UTP

dTMP

dUTP

dUMP

CDP

dCMP

dCDP

CTP

UDP

uracil

CMP

UMP

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

thymine

guanine

hypoxanthine

adenine

preQ₁

xanthosine

guanosine

inosine

adenosine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

XTP

ITP

GTP

ATP

GDP

ADP

IMP

XMP

GMP

AMP

dATP

dGTP

dITP

dGDP

dADP

dIMP

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

adenylo-succinate

5-hydroxy-CTP

5-hydroxy-CMP

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA