an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

oxaloacetate

H₂O

phosphoenolpyruvate

glycerone phosphate

CO₂

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

carbamoyl phosphate

lipid IV_A

lipid A disaccharide (E. coli)

DNA without lesion

2-dehydropantoate

3-methyl-2-oxobutanoate

4-amino-4-deoxychorismate

L-dehydro-ascorbate

citrate

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

hydrogen peroxide

prenyl diphosphate

isopentenyl diphosphate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-acetolactate

succinate semialdehyde

(S)-2-amino-6-oxohexanoate

selenophosphate

coproporphyrinogen III

quinolinate

carbonic acid

γ-L-glutamyl 5-phosphate

carboxyphosphate

glycolate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

2-dehydro-3-deoxy-D-galactonate

S-adenosyl 3-(methylsulfanyl)propylamine

urocanate

4-imidazolone-5-propanoate

D-erythro-imidazole-glycerol-phosphate

4-maleyl-acetoacetate

homogentisate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

2-maleylacetate

1-deoxy-L-glycero-tetrulose 4-phosphate

3-oxopropanoate

3-hydroxypropanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

isoquinolin-2(1H)-one

isoquinoline

7-carboxy-7-deazaguanine

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

acetoacetate

D-galacto-hexodialdose

(2S)-2-isopropylmalate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

(2R,3S)-3-isopropylmalate

tartronate semialdehyde

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

histidinol

histidinal

4'-phosphopantetheine

(R)-pantothenate

(R)-4'-phosphopantothenate

L-histidinol phosphate

imidazole acetol-phosphate

2-isopropylmaleate

(R)-mevalonate

autoinducer 2

S-ribosyl-L-homocysteine

S-methyl-5'-thioadenosine

2-dehydro-3-deoxy-D-galactonate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

N-succinyl-L,L-2,6-diaminopimelate

orotidine 5'-phosphate

(S)-dihydroorotate

glutathione disulfide

hydrogen selenide

glutathioselenol

selenodiglutathione

1-piperideine 6-carboxylate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

aminoacetone

1,2-dihydro-β-NADP

cyclic-2,3-O-oxalyl-L-threonate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

ammonia

dehydroascorbate (bicyclic form)

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

cyclic- 3,4-O-oxalyl-L-threonate

2,3-dioxo-L-gulonate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(2R)-2,3-dihydroxy-3-methylbutanoate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

2-chloroacetate

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

oxygen

Mg-protoporphyrin

protoporphyrin IX

protoporphyrinogen IX

coproporphyrinogen I

uroporphyrinogen-I

uroporphyrinogen-III

protoheme

phenylacetate

L-homocysteine

DNA with lesion

D-alanyl-D-alanine

carbamate

L-2-aminoadipate

L-α-amino-ε-keto-pimelate

L-methionine

glycine

L-proline

L-glutamate

L-glutamine

L-aspartate

L-histidine

L-serine

L-lysine

L-threonine

L-leucine

L-alanine

L-tryptophan

L-valine

L-tyrosine

L-cysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-ornithine

L-glutamate-5-semialdehyde

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-2-amino-3-oxobutanoate

L-saccharopine

L-aspartyl-4-phosphate

trans-4-hydroxy-L-proline

N-carbamoyl-L-aspartate

L-cystathionine

L,L-diaminopimelate

D-glutamate

D-alanine

β-alanine

4-aminobenzoate

D-mannonate

orotate

(R)-pantoate

(S)-1-pyrroline-5-carboxylate

pristanate

palmitate

stearate

decanoate

laurate

7-hydroxylaurate

octanoate

18-hydroxyoleate

16-hydroxypalmitate

18-hydroxystearate

phytenate

(15Z)-tetracosenoate

oleate

linoleate

α-linolenate

(R)-lactate

pyruvate

formate

2-oxoglutarate

2-oxobutanoate

cis-aconitate

D-threo-isocitrate

chorismate

α,ω-9Z-octadecenedioate

fumarate

succinate

(S)-malate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

6-aminopenicillanate

penicillin G

isopenicillin N

geranyl diphosphate

2-trans, 4-trans-undecadienoyl-CoA

4-trans-undecenoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

5-cis, 7-trans-tetradecadienoyl-CoA

(5Z)-tetradecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

6-cis-tridecenoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

4-cis-undecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

6-trans-tridecenoyl-CoA

D-galactonate

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructofuranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

β-D-fructofuranose

β-D-galactopyranose

D-glyceraldehyde

α-D-ribofuranose

keto-D-fructose

3,6-anhydro-α-L-galactopyranose

3,6-anhydro-L-galactofuranose

D-xylulose

agarotriose

agaropentaose

neoagarohexaose

neoagarotetraose

neoagarobiose

methylglyoxal

acetaldehyde

caldariellaquinone

diacetyl

caldariellaquinol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

adenine

AMP

IMP

GMP

XMP

ATP

GTP

ITP

ADP

GDP

IDP

dGDP

dIDP

dADP

dGTP

dITP

dATP

dGMP

dAMP

adenosine

2'-deoxyguanosine

2'-deoxyadenosine

tetrahydromethanopterin

6-carboxy-5,6,7,8-tetrahydropterin

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

5,10-methylene-tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

preQ₁

isoguanine

CTP

UTP

dUTP

dUDP

CDP

dCTP

dCDP

UDP

dTTP

dTDP

dTMP

dUMP

dCMP

UMP

CMP

2'-deoxyuridine

thymidine

2'-deoxycytidine

coenzyme A

adenylo-succinate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

8-oxo-GTP

8-oxo-dGTP

5-hydroxy-CTP

2-hydroxy-dATP

NAD⁺

NADP⁺

NADH

NADPH

(S)-NADHX

(R)-NADHX

nicotinate

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

acetyl-CoA

malonyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3'-dephospho-CoA

succinyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

16-hydroxypalmitoyl-CoA

palmitoyl-CoA

stearoyl-CoA

18-hydroxyoleoyl-CoA

18-hydroxystearoyl-CoA

pristanoyl-CoA

2-hydroxyphytanoyl-CoA

phytanoyl-CoA

octanoyl-CoA

decanoyl-CoA

lauroyl-CoA

7-hydroxylauroyl-CoA

propanoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

phytenoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(S)-methylmalonyl-CoA

trans-dienelactone

cis-dienelactone

glutathione

spermidine

putrescine

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

superoxide

hydroxyl radical

Fe³⁺

Mg²⁺

Fe²⁺

ammonium

H⁺

hydrogencarbonate

selenate

selenide

OH^-

selenite

sulfate

chloride

phosphonate

phosphate

diphosphate

triphosphate

preQ₀