an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
autoinducer 2
2-amino-3-carboxymuconate-6-semialdehyde
5-amino-6-(5-phospho-D-ribitylamino)uracil
5-amino-6-(5-phospho-D-ribosylamino)uracil
D-erythro-imidazole-glycerol-phosphate
imidazole acetol-phosphate
histidinal
4-amino-2-methyl-5-pyrimidinemethanol
L-arginino-succinate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
1,6-anhydro-N-acetyl-β-muramate
N-acetyl-D-muramate 6-phosphate
carbon monoxide
N5-carboxyaminoimidazole ribonucleotide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
DNA without lesion
oxaloacetate
5-oxo-L-proline
pimeloyl-CoA
8-amino-7-oxononanoate
α-D-glucosamine 1-phosphate
(R)-mevalonate diphosphate
(R)-mevalonate
(R)-5-phosphomevalonate
(R)-pantothenate
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
D-gluconate 6-phosphate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
thiamine phosphate
selenophosphate
(S)-dihydroorotate
carbamoyl phosphate
(L-threonylcarbamoyl)adenylate
glutathione disulfide
acetoacetate
4-amino-4-deoxychorismate
shikimate
3-dehydroshikimate
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
3-deoxy-D-arabino-heptulosonate 7-phosphate
3-dehydroquinate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
2-dehydro-3-deoxy-D-gluconate
L-histidinol phosphate
histidinol
hydrogen selenide
O-acetyl-L-serine
γ-L-glutamyl 5-phosphate
1-deoxy-L-glycero-tetrulose 4-phosphate
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
5-amino-6-(D-ribitylamino)uracil
(lipoyl)adenylate
dihydroxyacetone
glycerone phosphate
nicotinate adenine dinucleotide
S-methyl-5'-thioadenosine
5-(methylsulfanyl)-α-D-ribose
S-ribosyl-L-homocysteine
acetyl phosphate
β-nicotinate D-ribonucleotide
quinolinate
2-(α-hydroxyethyl)thiamine diphosphate
dihydrolipoamide
lipoamide
prephenate
4'-phosphopantetheine
(R)-4'-phosphopantothenate
(R)-4'-phosphopantothenoyl-L-cysteine
thiamine diphosphate
phosphoenolpyruvate
isopentenyl diphosphate
prenyl diphosphate
6-phospho D-glucono-1,5-lactone
hydrogen peroxide
CO2
orotidine 5'-phosphate
4-aminobutanoate
succinate semialdehyde
xanthine
H2O
4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate
phosphite
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
ammonia
(R)-lipoate
coenzyme A
tetrahydropteroyl tri-L-glutamate
5,6,7,8-tetrahydrofolate
5-methyltetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
7,8-dihydrofolate monoglutamate
glycine betaine
FMN
FAD
(S)-NADHX
(R)-NADHX
NADP+
NAD+
NADH
NADPH
riboflavin
thiamine
nicotinamide
nicotinate
(2E,6E)-farnesyl diphosphate
H+
ammonium
selenide
hydrogencarbonate
thiosulfate
superoxide
phosphonate
phosphate
diphosphate
glutathione
(R)-S-lactoylglutathione
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
methanethiol
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
2-iminopropanoate
glycerol
butan-1-ol
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
N-acetyl-β-neuraminate
4-aminobenzoate
butanoate
D-mannonate
acetate
orotate
(S)-1-pyrroline-5-carboxylate
L-cysteine
L-tyrosine
L-serine
L-glutamine
L-threonine
glycine
L-aspartate
L-glutamate
L-lysine
L-histidine
L-arginine
D-aspartate
D-glutamate
D-serine
D-alanine
L-aspartyl-4-phosphate
N-carbamoyl-L-aspartate
N-formimino-L-glutamate
O-acetyl-L-homoserine
L-methionine
L-leucine
L-selenocysteine
L-alanine
L-proline
L-ornithine
L-cystathionine
L-citrulline
L-homoserine
O-succinyl-L-homoserine
S-sulfo-L-cysteine
L-homocysteine
L-glutamate-5-semialdehyde
hypoglycin A
L-aspartate 4-semialdehyde
S-adenosyl-L-methionine
S-adenosyl-L-homocysteine
meso-diaminopimelate
chorismate
(4S)-4-hydroxy-2-oxoglutarate
fumarate
succinate
(R)-lactate
formate
pyruvate
glyoxylate
2-oxoglutarate
2-oxobutanoate
glycolaldehyde
α-D-glucopyranose
β-D-glucopyranose
aldehydo-D-ribose
α-D-ribofuranose
β-D-ribofuranose
acetaldehyde
butan-1-al
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
GDP-α-D-mannose
UDP-α-D-glucose
UDP-α-D-galactose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
sucrose 6G-phosphate
sucrose 6F-phosphate
α-lactose 6'-phosphate
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (mycobacteria)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-tagatofuranose 1,6-bisphosphate
β-D-fructose 1,6-bisphosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
D-tagatofuranose 6-phosphate
β-D-fructofuranose 6-phosphate
D-fructose 6-phosphate
α-D-mannopyranose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-galactose 6-phosphate
β-D-galactose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
α-D-mannose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
β-D-fructofuranose
N-acetyl-β-D-mannosamine
N-acetyl-β-D-glucosamine
sucrose
(S)-3-hydroxy-3-methylglutaryl-CoA
2-methylacetoacetyl-CoA
succinyl-CoA
3'-dephospho-CoA
acetyl-CoA
crotonyl-CoA
oleoyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
butanoyl-CoA
propanoyl-CoA
mono-trans,octa-cis-decaprenyl diphosphate
trans,octacis-decaprenyl phosphate
dioleoyl phosphatidate
1-oleoyl-2-lyso-glycerone phosphate
1-oleoyl-sn-glycerol 3-phosphate
di-trans,octa-cis-undecaprenyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
urate
6,7-dimethyl-8-(1-D-ribityl)lumazine
7,8-dihydroneopterin 3'-phosphate
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydroneopterin
7,8-dihydromonapterin
6-(hydroxymethyl)-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate
7,8-dihydropteroate
guanine
adenine
2'-deoxyinosine
2'-deoxyadenosine
2'-deoxyguanosine
inosine
xanthosine
guanosine
adenosine
hypoxanthine
dIMP
dITP
dGTP
dATP
dGDP
dADP
XTP
ITP
GTP
ATP
GDP
ADP
AMP
XMP
IMP
GMP
dCTP
dTTP
dUTP
dTDP
dUMP
dTMP
dUDP
UTP
CTP
CDP
dCMP
dCDP
UDP
uracil
cytidine
uridine
2'-deoxycytidine
thymidine
2'-deoxyuridine
thymine
CMP
UMP
adenylo-succinate
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
5'-deoxyadenosine
β-nicotinamide D-ribonucleotide
hypoglycin B
2-iminosuccinate
2-iminobutanoate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
L-cysteinylglycine
D-alanyl-D-alanine
γ-L-glutamyl-L-cysteine
DNA with lesion
hydrogen sulfide
oxygen
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
2,3-diphospho-D-glycerate
2-phospho-D-glycerate
3-phospho-D-glycerate
α-D-glucosamine 6-phosphate
N-acetyl-D-mannosamine 6-phosphate
5,10-methenyltetrahydrofolate mono-L-glutamate