ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C11543

H2O

C11479

phosphoenolpyruvate

C928

CO2

C6444

oxaloacetate

C10349

glycerone phosphate

C10274

5-amino-6-(5-phospho-D-ribosylamino)uracil

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C12162

hydrogen peroxide

C873

coproporphyrinogen III

C14074

prenyl diphosphate

C3319

4-methyl-2-oxopentanoate

C10794

lipid A disaccharide (E. coli)

C949

lipid X

C12218

α-D-glucosamine 1-phosphate

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C12364

isopentenyl diphosphate

C12369

3-dehydroquinate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C11652

shikimate 3-phosphate

C11653

shikimate

C12350

7,8-diaminopelargonate

C3264

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

C1130

8-amino-7-oxononanoate

C12355

dethiobiotin

C13950

pimeloyl-CoA

C12139

preuroporphyrinogen

C11767

porphobilinogen

C1231

5-aminolevulinate

C12214

(S)-4-amino-5-oxopentanoate

C3684

3-deoxy-α-D-manno-2-octulosonate

C12394

6-phospho D-glucono-1,5-lactone

C3656

D-gluconate 6-phosphate

C13635

β-D-ribosylnicotinate

C11857

β-nicotinate D-ribonucleotide

C11604

thiamine diphosphate

C1552

2-(α-hydroxyethyl)thiamine diphosphate

C11690

S-acetyldihydrolipoamide

C12333

dihydrolipoamide

C1538

2-C-methyl-D-erythritol 4-phosphate

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C6099

lipid IVA

C3850

5-amino-6-(D-ribitylamino)uracil

C12074

3-deoxy-D-manno-octulosonate 8-phosphate

C13627

DNA without lesion

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C12078

itaconate

C1431

3-dehydroshikimate

C14181

2-maleylacetate

C15215

(L-threonylcarbamoyl)adenylate

C2580

methylsalicylate

C15056

salicyl alcohol

C12274

enol-phenylpyruvate

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C352

2-iminoacetate

C11802

4'-phosphopantetheine

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C1268

(R)-4'-phosphopantothenate

C12494

N-acetyl-D-muramate 6-phosphate

C12492

1,6-anhydro-N-acetyl-β-muramate

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C1010

ammonia

C9077

(2E,6E)-farnesyl diphosphate

C10100

trans-dienelactone

C10102

cis-dienelactone

C3727

all-trans-retinyl palmitate

C4913

malonyl-CoA

C5298

acetyl-CoA

C5186

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

C5182

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

C4901

succinyl-CoA

C4937

3'-dephospho-CoA

C5282

itaconyl-CoA

C5635

oleoyl-CoA

C9096

(indol-3-yl)acetate

C9098

methyl (indol-3-yl)acetate

C10301

agmatine

C1689

trimethyl sulfonium

C7016

sulfite

C7024

thiosulfate

C7034

hydrogensulfite

C7036

hydrogencarbonate

C8958

superoxide

C6097

phosphate

C6093

diphosphate

C11023

Fe2+

C10999

Cd2+

C4320

H+

C4328

ammonium

C4734

dimethyl sulfide

C12637

3-sulfopyruvate

C12587

L-cysteate

C3978

thiocyanate

C6287

2-octaprenylphenol

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C2765

1-oleoyl-2-lyso-glycerone phosphate

C6437

3-phospho-D-glyceroyl-phosphate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C8419

sn-glycerol 3-phosphate

C7121

oxygen

C7676

protoporphyrin IX

C7666

protoporphyrinogen IX

C7672

coproporphyrinogen I

C7662

uroporphyrinogen-I

C7658

uroporphyrinogen-III

C6624

protoheme

C13422

hydrogen cyanide

C10799

DNA with lesion

C12247

L-homocysteine

C6043

4-methylphenol

C1434

D-alanyl-D-alanine

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C3536

L-α-amino-ε-keto-pimelate

C12073

L-aspartyl-4-phosphate

C8797

D-glutamate

C8799

D-alanine

C2469

L-phenylalanine

C5573

L-tyrosine

C5612

L-cysteine

C5577

L-threonine

C5579

L-serine

C12067

glycine

C5609

L-glutamine

C5607

L-glutamate

C5596

L-aspartate

C5584

L-lysine

C5642

L-arginine

C5597

L-alanine

C5588

L-leucine

C5583

L-methionine

C5580

L,L-diaminopimelate

C15292

S-adenosyl-L-methionine

C12239

L-aspartate 4-semialdehyde

C12203

S-adenosyl-L-homocysteine

C12245

L-homoserine

C5585

meso-diaminopimelate

C7809

AMP

C7844

ATP

C7757

ADP

C7795

GDP

C7745

GTP

C7817

IDP

C7759

ITP

C5552

5'-deoxyadenosine

C7823

dADP

C7783

dATP

C7807

dGDP

C7751

dGTP

C7827

GMP

C7653

guanosine 3'-monophosphate

C7641

adenosine 3'-monophosphate

C7811

XMP

C7741

IMP

C7749

dITP

C7747

dIDP

C7834

dIMP

C7753

XTP

C10288

adenylo-succinate

C7848

2'-deoxyguanosine

C7813

2'-deoxyadenosine

C7840

dGMP

C7743

dAMP

C10263

ADP-α-D-glucose

C4018

NADP+

C4020

NAD+

C14497

NADPH

C14500

NADH

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C7824

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7822

UDP-N-acetyl-α-D-muramate

C7776

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7782

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

C7780

UDP-α-D-glucose

C7814

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

C5849

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C7444

UDP-N-acetyl-α-D-glucosamine

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C8305

CMP-3-deoxy-β-D-manno-octulosonate

C9540

preQ1

C6460

cytidine-3'-monophosphate

C6462

uridine 3'-monophosphate

C8770

dUMP

C8744

dTMP

C8755

dCMP

C8720

dTDP

C8733

dCDP

C8752

dUDP

C8724

dUTP

C8772

dCTP

C8764

dTTP

C8714

UDP

C8732

CDP

C4243

β-nicotinamide D-ribonucleotide

C8761

CTP

C8760

UTP

C2241

UMP

C2245

CMP

C2527

2'-deoxyuridine

C2523

2'-deoxycytidine

C15085

guanosine

C15088

adenosine

C15094

xanthosine

C15091

inosine

C2702

cytidine

C2706

uridine

C4086

1-(β-D ribofuranosyl)nicotinamide

C10688

maltotriose

C10226

α-Kdo-(2→6)-lipid IVA

C10258

α-Kdo-(2->8)-α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA

C10223

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA

C10256

α-Kdo-(2->8)-[α-Kdo-(2->4)]-α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA

C10257

α-Kdo-(2->4)-α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA

C10693

sucrose

C10689

maltotetraose

C10690

maltopentaose

C10691

maltohexaose

C10692

maltoheptaose

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C15289

D-sedoheptulose 7-phosphate

C10340

D-erythrose 4-phosphate

C8811

α-D-glucopyranose 1-phosphate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2989

β-D-fructofuranose 6-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C2123

β-D-glucose 6-phosphate

C2125

α-D-glucose 6-phosphate

C8704

D-xylulose 5-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C8700

aldehydo-D-arabinose 5-phosphate

C10604

D-ribulose 5-phosphate

C5615

D-glyceraldehyde 3-phosphate

C6673

sucrose 6F-phosphate

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C10374

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

C10379

a peptidoglycan dimer (E. faeciums)

C10372

a peptidoglycan dimer (S. aureus)

C10381

a peptidoglycan dimer (mycobacteria)

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3131

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C3122

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C361

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

C13230

a peptidoglycan dimer (meso-diaminopimelate containing)

C10383

a peptidoglycan with L,D cross-links (mycobacteria)

C10364

a peptidoglycan with D,D cross-links (mycobacteria)

C14587

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

C14591

a peptidoglycan with D,D cross-link (S. aureus)

C8835

β-D-fructofuranose

C15288

N-acetylmuramate

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C5286

N-acetyl-β-D-glucosamine

C9494

D-glyceraldehyde

C2858

glycolaldehyde

C7085

β-D-glucopyranose

C7087

α-D-glucopyranose

C10966

all-trans-retinol

C9304

trans,octacis-decaprenyl phosphate

C9075

mono-trans,octa-cis-decaprenyl diphosphate

C8322

di-trans,octa-cis-undecaprenyl phosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C5364

all-trans-decaprenyl diphosphate

C5382

all-trans-heptaprenyl diphosphate

C5368

all-trans-hexaprenyl diphosphate

C5383

all-trans-octaprenyl diphosphate

C15301

all-trans-nonaprenyl diphosphate

C4550

3-decaprenyl-4-hydroxybenzoate

C4549

3-heptaprenyl-4-hydroxybenzoate

C7060

3-hexaprenyl-4-hydroxybenzoate

C4553

3-octaprenyl-4-hydroxybenzoate

C4545

3-nonaprenyl-4-hydroxybenzoate

C3117

dioleoyl phosphatidate

C6241

1-oleoyl-sn-glycerol 3-phosphate

C10527

myo-inositol

C13576

1D-myo-inositol 1-monophosphate

C13573

1D-myo-inositol 3-monophosphate

C11421

protocatechuate

C3448

methanol

C11517

acetate

C3383

palmitate

C6165

leukotriene-E4

C6163

leukotriene-D4

C3308

pyruvate

C3421

formate

C6185

(R)-lactate

C8950

chorismate

C6443

fumarate

C6442

succinate

C2802

(S)-malate

C3301

2-oxoglutarate

C3351

glyoxylate

C3345

3-phenyl-2-oxopropanoate

C11429

salicylate

C8974

4-aminobenzoate

C6934

4-hydroxybenzoate

C7033

6-hydroxy-2-cyclohexen-one-carboxylate

C6908

salicyl-6-hydroxy-2-cyclohexene-on-oyl

C1867

3-demethylubiquinol-8

C1868

3-demethylubiquinol-9

C1865

3-demethylubiquinol-7

C1866

3-demethylubiquinol-10

C1863

demethylmenaquinol-8

C1680

menaquinol-8

C5543

ubiquinol-8

C5551

ubiquinol-9

C5535

ubiquinol-7

C5563

ubiquinol-10

C13354

preQ0

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12664

7,8-dihydroneopterin

C12696

7,8-dihydromonapterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12708

7,8-dihydroneopterin 3'-phosphate

C12730

7,8-dihydroneopterin 3'-triphosphate

C10609

7,8-dihydropteroate

C7129

5,6,7,8-tetrahydrofolate

C7134

tetrahydropteroyl tri-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C4599

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

C10597

7,8-dihydrofolate monoglutamate

C10053

FAD

C10052

FMN

C10988

riboflavin

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C10614

coenzyme A

C2239

oxidized coenzyme F420-2

C2234

oxidized coenzyme F420-1

C2232

oxidized coenzyme F420-0

C5394

(R)-NADHX

C5392

(S)-NADHX