ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C13723

arsenite

C14003

N-acetyl-L-glutamate 5-semialdehyde

C11930

N-acetylglutamyl-phosphate

C12056

L-arginino-succinate

C15180

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

C13929

cyclohexane-1-carbonyl-CoA

C13930

cyclohexane-1-carboxylate

C1357

3-oxopimeloyl-CoA

C1399

3-hydroxypimeloyl-CoA

C1148

6-oxocyclohex-1-ene-1-carbonyl-CoA

C1155

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

C12402

cyclohex-1,5-diene-1-carbonyl-CoA

C12407

crotonate

C12174

4-amino-2-methyl-5-pyrimidinemethanol

C13879

(R)-mevalonate diphosphate

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C3850

5-amino-6-(D-ribitylamino)uracil

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C567

2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C12218

α-D-glucosamine 1-phosphate

C566

isopentenyl phosphate

C1010

ammonia

C1024

aminoacetone

C13638

N2-succinyl-L-glutamate 5-semialdehyde

C11869

N2-succinylglutamate

C14179

4-acetamidobutanal

C14137

4-acetamidobutanoate

C9422

nicotinate adenine dinucleotide

C15215

(L-threonylcarbamoyl)adenylate

C7865

urea

C939

butanoyl phosphate

C13716

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

C1440

nigerose

C11802

4'-phosphopantetheine

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C11701

α-D-ribose 1,5-bisphosphate

C13851

hydrogenobyrinate

C13850

hydrogenobyrinate a,c-diamide

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C3656

D-gluconate 6-phosphate

C651

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

C12254

ethanolamine

C11857

β-nicotinate D-ribonucleotide

C927

carbon monoxide

C11873

N-succinyl-L,L-2,6-diaminopimelate

C12078

itaconate

C15238

5-deoxy-α-ribose 1-phosphate

C873

coproporphyrinogen III

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C12369

3-dehydroquinate

C6444

oxaloacetate

C13985

(R)-5-phosphomevalonate

C891

citrate

C14202

hexulose 6-phosphate

C11539

xanthine

C8333

(indol-3-yl)pyruvate

C11693

(indol-3 yl)acetyl-CoA

C3262

3-methyl-2-oxobutanoate

C1528

2-dehydropantoate

C1268

(R)-4'-phosphopantothenate

C11800

(R)-pantothenate

C11832

orotidine 5'-phosphate

C12352

(S)-dihydroorotate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1184

5-phospho-β-D-ribosylamine

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C13854

hydrogen selenide

C1102

O-acetyl-L-serine

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C1196

S-methyl-5'-thioadenosine

C2191

carbamoyl phosphate

C11964

(R)-mevalonate

C1353

3-phosphooxypyruvate

C11493

2-phosphoglycolate

C11483

glycolate

C928

CO2

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C638

5-(methylsulfanyl)-ribulose 1-phosphate

C11479

phosphoenolpyruvate

C10349

glycerone phosphate

C11543

H2O

C12364

isopentenyl diphosphate

C14074

prenyl diphosphate

C996

adenosine 5'-phosphosulfate

C192

adenosine 5'-phosphoselenate

C9821

cobalt-factor III

C9822

cobalt-precorrin-3

C9845

cobalt-sirohydrochlorin

C9837

cobalt-precorrin-7

C9866

cobalt-precorrin-8

C9842

cobalt-precorrin-6B

C9813

cobalt-precorrin-5B

C9818

cobalt-precorrin-6A

C9847

cobalt-precorrin-4

C9871

cobalt-precorrin-5A

C9811

cob(II)yrinate c-monoamide

C9828

cob(II)yrinate a,c-diamide

C9861

cobyrinate

C7658

uroporphyrinogen-III

C7666

protoporphyrinogen IX

C7118

hydrogen sulfide

C8419

sn-glycerol 3-phosphate

C6437

3-phospho-D-glyceroyl-phosphate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C6287

2-octaprenylphenol

C9077

(2E,6E)-farnesyl diphosphate

C4678

glutathione

C4328

ammonium

C4326

Na+

C4320

H+

C11001

Mo2+

C11006

Co2+

C7014

sulfate

C7012

tungstate

C7030

nitrate

C7036

hydrogencarbonate

C7024

thiosulfate

C7057

molybdate

C7020

selenate

C6097

phosphate

C6093

diphosphate

C10301

agmatine

C3548

putrescine

C3580

dehydrospermidine

C3574

spermidine

C13166

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C11220

glycerophosphoglycerol

C11219

glycerophosphoserine

C11222

sn-glycero-3-phosphoethanolamine

C7685

allantoate

C9539

(S)-(+)-allantoin

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C9096

(indol-3-yl)acetate

C4924

glutaryl-CoA

C4927

(E)-glutaconyl-CoA

C4937

3'-dephospho-CoA

C5035

4-hydroxybenzoyl-CoA

C5282

itaconyl-CoA

C4922

isobutanoyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C5298

acetyl-CoA

C4901

succinyl-CoA

C5182

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

C5186

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

C1337

crotonyl-CoA

C10775

(S)-3-hydroxybutanoyl-CoA

C1177

propanoyl-CoA

C2008

acetoacetyl-CoA

C2598

D-glucono-1,5-lactone

C10053

FAD

C10049

FMNH2

C10052

FMN

C5392

(S)-NADHX

C5394

(R)-NADHX

C14500

NADH

C14497

NADPH

C4020

NAD+

C4018

NADP+

C12718

molybdopterin

C10614

coenzyme A

C6007

MoO2-molybdopterin cofactor

C6002

cytidylyl molybdenum cofactor

C7129

5,6,7,8-tetrahydrofolate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C10597

7,8-dihydrofolate monoglutamate

C10988

riboflavin

C10982

nicotinate

C10143

menadione

C2305

precorrin-1

C2311

precorrin-2

C1705

sirohydrochlorin

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C15044

reduced riboflavin

C12702

cyclic pyranopterin phosphate

C12668

molybdopterin adenine dinucleotide

C9454

adenine

C15088

adenosine

C7785

hypoxanthine

C7834

dIMP

C7749

dITP

C7751

dGTP

C7783

dATP

C7807

dGDP

C7823

dADP

C7817

IDP

C7795

GDP

C7757

ADP

C7827

GMP

C7811

XMP

C7741

IMP

C7809

AMP

C7753

XTP

C7759

ITP

C7745

GTP

C7844

ATP

C8752

dUDP

C8764

dTTP

C8707

cytosine

C8770

dUMP

C8772

dCTP

C8724

dUTP

C8755

dCMP

C8733

dCDP

C8744

dTMP

C8720

dTDP

C11481

orotate

C8739

uracil

C8760

UTP

C8714

UDP

C8761

CTP

C8732

CDP

C7780

UDP-α-D-glucose

C8666

UDP-α-D-galactose

C7444

UDP-N-acetyl-α-D-glucosamine

C2702

cytidine

C2706

uridine

C2519

thymidine

C2523

2'-deoxycytidine

C2527

2'-deoxyuridine

C10601

thymine

C2245

CMP

C2241

UMP

C13366

(indole-3-yl)acetonitrile

C6934

4-hydroxybenzoate

C3093

urate

C2915

menadiol

C8974

4-aminobenzoate

C6443

fumarate

C5596

L-aspartate

C6442

succinate

C8534

cis-aconitate

C8531

D-threo-isocitrate

C6185

(R)-lactate

C3420

propanoate

C3421

formate

C11517

acetate

C3308

pyruvate

C3418

butanoate

C3409

octanoate

C5001

apo-4'-lycopenoate

C6163

leukotriene-D4

C6165

leukotriene-E4

C11485

D-gluconate

C11482

(R)-pantoate

C3301

2-oxoglutarate

C3257

2-oxobutanoate

C3351

glyoxylate

C5579

L-serine

C11441

β-alanine

C5588

L-leucine

C5609

L-glutamine

C12067

glycine

C5607

L-glutamate

C5642

L-arginine

C5612

L-cysteine

C5577

L-threonine

C5573

L-tyrosine

C12073

L-aspartyl-4-phosphate

C12201

L-2-amino-3-oxobutanoate

C15000

N-acetyl-L-ornithine

C14988

N-acetyl-L-citrulline

C14973

N-acetyl-L-glutamate

C13322

N-carbamoyl-L-aspartate

C3402

3-phospho-L-serine

C12303

L-citrulline

C12245

L-homoserine

C12229

O-phospho-L-homoserine

C12239

L-aspartate 4-semialdehyde

C12261

hypoglycin A

C12231

L-ornithine

C2426

S-sulfo-L-cysteine

C15292

S-adenosyl-L-methionine

C12203

S-adenosyl-L-homocysteine

C12247

L-homocysteine

C5592

L-selenocysteine

C5583

L-methionine

C5580

L,L-diaminopimelate

C3485

butan-1-al

C3529

1-octanal

C3500

acetaldehyde

C9494

D-glyceraldehyde

C7087

α-D-glucopyranose

C7085

β-D-glucopyranose

C3449

butan-1-ol

C3450

ethanol

C3731

glycerol

C10527

myo-inositol

C6681

galactinol

C3464

D-myo-inositol (1,4,5)-trisphosphate

C3466

D-myo-inositol (1,3,4)-trisphosphate

C5407

D-myo-inositol (1,3,4,5)-tetrakisphosphate

C3453

D-myo-inositol (1,4)-bisphosphate

C5383

all-trans-octaprenyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C10874

apo-4'-lycopenal

C4553

3-octaprenyl-4-hydroxybenzoate

C5727

raffinose

C10688

maltotriose

C10689

maltotetraose

C10692

maltoheptaose

C10690

maltopentaose

C10691

maltohexaose

C6176

α-maltose

C10693

sucrose

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C8835

β-D-fructofuranose

C973

D-ribulose-1,5-bisphosphate

C6673

sucrose 6F-phosphate

C1009

GDP-α-D-mannose

C5615

D-glyceraldehyde 3-phosphate

C8811

α-D-glucopyranose 1-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10326

β-D-fructose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C2989

β-D-fructofuranose 6-phosphate

C6719

β-D-mannopyranose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C2125

α-D-glucose 6-phosphate

C2123

β-D-glucose 6-phosphate

C10604

D-ribulose 5-phosphate

C2057

α-D-ribose-1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C8815

α-D-galactose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C8813

α-D-mannose 1-phosphate

C7652

cyclic-AMP

C5552

5'-deoxyadenosine

C10288

adenylo-succinate

C4243

β-nicotinamide D-ribonucleotide

C11520

hypoglycin B

C1328

L-cysteinylglycine