ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C1010

ammonia

C567

2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C3850

5-amino-6-(D-ribitylamino)uracil

C1353

3-phosphooxypyruvate

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C927

carbon monoxide

C12174

4-amino-2-methyl-5-pyrimidinemethanol

C1268

(R)-4'-phosphopantothenate

C12056

L-arginino-succinate

C11930

N-acetylglutamyl-phosphate

C13879

(R)-mevalonate diphosphate

C6444

oxaloacetate

C11493

2-phosphoglycolate

C11483

glycolate

C11648

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

C9422

nicotinate adenine dinucleotide

C7865

urea

C13985

(R)-5-phosphomevalonate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C655

3α,7α-dihydroxy-24-oxo-5β-cholestanoyl CoA

C3656

D-gluconate 6-phosphate

C1303

4-guanidinobutyramide

C11873

N-succinyl-L,L-2,6-diaminopimelate

C1321

4-aminobutanoate

C11639

succinate semialdehyde

C6349

3-oxopropanoate

C11832

orotidine 5'-phosphate

C11606

thiamine phosphate

C11604

thiamine diphosphate

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C891

citrate

C11701

α-D-ribose 1,5-bisphosphate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C11802

4'-phosphopantetheine

C11800

(R)-pantothenate

C1528

2-dehydropantoate

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C1440

nigerose

C8333

(indol-3-yl)pyruvate

C11693

(indol-3 yl)acetyl-CoA

C11539

xanthine

C13854

hydrogen selenide

C1102

O-acetyl-L-serine

C3350

2-oxoadipate

C11964

(R)-mevalonate

C12164

H2

C1325

4-amino-4-deoxychorismate

C12352

(S)-dihydroorotate

C1024

aminoacetone

C11857

β-nicotinate D-ribonucleotide

C14202

hexulose 6-phosphate

C2191

carbamoyl phosphate

C6614

O-ureido-L-homoserine

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C13716

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

C566

isopentenyl phosphate

C12078

itaconate

C1196

S-methyl-5'-thioadenosine

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C15238

5-deoxy-α-ribose 1-phosphate

C873

coproporphyrinogen III

C3262

3-methyl-2-oxobutanoate

C928

CO2

C11479

phosphoenolpyruvate

C10349

glycerone phosphate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C12369

3-dehydroquinate

C11543

H2O

C12364

isopentenyl diphosphate

C14074

prenyl diphosphate

C13723

arsenite

C7666

protoporphyrinogen IX

C7121

oxygen

C7118

hydrogen sulfide

C8420

sn-glycerol 1-phosphate

C6427

2,3-diphospho-D-glycerate

C6437

3-phospho-D-glyceroyl-phosphate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C6287

2-octaprenylphenol

C8962

nitric oxide

C4734

dimethyl sulfide

C4678

glutathione

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C11001

Mo2+

C4328

ammonium

C4320

H+

C4326

Na+

C1689

trimethyl sulfonium

C7036

hydrogencarbonate

C7024

thiosulfate

C7030

nitrate

C6097

phosphate

C6093

diphosphate

C12247

L-homocysteine

C6526

(2Z)-2-aminobut-2-enoate

C10301

agmatine

C3548

putrescine

C3580

dehydrospermidine

C3574

spermidine

C13166

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C4560

3,24-dioxocholest-4-en-26-oyl-CoA

C4818

3-oxochol-4-en-24-oyl-CoA

C9096

(indol-3-yl)acetate

C4961

3α,7α,12α-trihydroxy-24-oxo-5-β-cholestanoyl CoA

C4196

choloyl-CoA

C4192

chenodeoxycholoyl-CoA

C4913

malonyl-CoA

C4937

3'-dephospho-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C4901

succinyl-CoA

C5282

itaconyl-CoA

C4922

isobutanoyl-CoA

C5298

acetyl-CoA

C1177

propanoyl-CoA

C2008

acetoacetyl-CoA

C2598

D-glucono-1,5-lactone

C10053

FAD

C10049

FMNH2

C10052

FMN

C5392

(S)-NADHX

C5394

(R)-NADHX

C14500

NADH

C14497

NADPH

C4020

NAD+

C4018

NADP+

C10614

coenzyme A

C6007

MoO2-molybdopterin cofactor

C6002

cytidylyl molybdenum cofactor

C7129

5,6,7,8-tetrahydrofolate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C4599

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

C10597

7,8-dihydrofolate monoglutamate

C10988

riboflavin

C10982

nicotinate

C10994

thiamine

C10143

menadione

C4985

(S)-1-pyrroline-5-carboxylate

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C15044

reduced riboflavin

C12720

7,8-dihydroneopterin 2'-phosphate

C12708

7,8-dihydroneopterin 3'-phosphate

C12664

7,8-dihydroneopterin

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12730

7,8-dihydroneopterin 3'-triphosphate

C12674

7,8-dihydroneopterin 2',3'-cyclic phosphate

C9454

adenine

C15088

adenosine

C7785

hypoxanthine

C7783

dATP

C7751

dGTP

C7823

dADP

C7807

dGDP

C7817

IDP

C7757

ADP

C7795

GDP

C7741

IMP

C7811

XMP

C7827

GMP

C7809

AMP

C7759

ITP

C7745

GTP

C7844

ATP

C8752

dUDP

C8707

cytosine

C8720

dTDP

C11481

orotate

C8739

uracil

C8744

dTMP

C8770

dUMP

C8772

dCTP

C8724

dUTP

C8761

CTP

C8760

UTP

C8764

dTTP

C8732

CDP

C8714

UDP

C8755

dCMP

C8733

dCDP

C7780

UDP-α-D-glucose

C1930

dTDP-β-L-rhamnose

C1896

dTDP-4-dehydro-β-L-rhamnose

C1939

dTDP-α-D-glucose

C2702

cytidine

C2706

uridine

C2519

thymidine

C2523

2'-deoxycytidine

C2527

2'-deoxyuridine

C10601

thymine

C2245

CMP

C2241

UMP

C13366

(indole-3-yl)acetonitrile

C3093

urate

C2915

menadiol

C8974

4-aminobenzoate

C8950

chorismate

C6443

fumarate

C5596

L-aspartate

C6442

succinate

C2802

(S)-malate

C8534

cis-aconitate

C8531

D-threo-isocitrate

C6185

(R)-lactate

C3420

propanoate

C11517

acetate

C3421

formate

C3308

pyruvate

C6163

leukotriene-D4

C6165

leukotriene-E4

C11485

D-gluconate

C11482

(R)-pantoate

C3351

glyoxylate

C3301

2-oxoglutarate

C3257

2-oxobutanoate

C3530

L-2-aminoadipate

C5579

L-serine

C11441

β-alanine

C5588

L-leucine

C5581

L-proline

C5609

L-glutamine

C12067

glycine

C5607

L-glutamate

C5630

Nω-hydroxy-L-arginine

C5642

L-arginine

C5612

L-cysteine

C5643

L-asparagine

C5577

L-threonine

C5573

L-tyrosine

C12201

L-2-amino-3-oxobutanoate

C3402

3-phospho-L-serine

C15000

N-acetyl-L-ornithine

C14988

N-acetyl-L-citrulline

C14973

N-acetyl-L-glutamate

C13322

N-carbamoyl-L-aspartate

C12303

L-citrulline

C12233

L-glutamate-5-semialdehyde

C2426

S-sulfo-L-cysteine

C12231

L-ornithine

C12237

L-canaline

C12261

hypoglycin A

C15292

S-adenosyl-L-methionine

C12203

S-adenosyl-L-homocysteine

C5592

L-selenocysteine

C5583

L-methionine

C5580

L,L-diaminopimelate

C5595

L-cystathionine

C2858

glycolaldehyde

C3485

butan-1-al

C3483

formaldehyde

C3500

acetaldehyde

C9494

D-glyceraldehyde

C7087

α-D-glucopyranose

C7085

β-D-glucopyranose

C3449

butan-1-ol

C3450

ethanol

C10527

myo-inositol

C13573

1D-myo-inositol 3-monophosphate

C13576

1D-myo-inositol 1-monophosphate

C10448

saturated CDP-archaeol

C10453

unsaturated CDP-archaeol

C6266

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

C6269

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

C9077

(2E,6E)-farnesyl diphosphate

C4553

3-octaprenyl-4-hydroxybenzoate

C5378

geranylgeranyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C10688

maltotriose

C10689

maltotetraose

C10690

maltopentaose

C10692

maltoheptaose

C10691

maltohexaose

C6176

α-maltose

C10693

sucrose

C8835

β-D-fructofuranose

C973

D-ribulose-1,5-bisphosphate

C6673

sucrose 6F-phosphate

C1015

GDP-α-D-glucose

C5615

D-glyceraldehyde 3-phosphate

C8811

α-D-glucopyranose 1-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10326

β-D-fructose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C2989

β-D-fructofuranose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C2123

β-D-glucose 6-phosphate

C2125

α-D-glucose 6-phosphate

C10604

D-ribulose 5-phosphate

C2057

α-D-ribose-1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C10288

adenylo-succinate

C7652

cyclic-AMP

C5552

5'-deoxyadenosine

C4243

β-nicotinamide D-ribonucleotide

C4240

reduced β-nicotinamide D-ribonucleotide

C11520

hypoglycin B

C6599

2-iminobutanoate

C8496

N-acetyl-L-glutaminyl-L-glutamine

C8498

N-acetyl-L-glutaminyl-L-glutamine amide

C1328

L-cysteinylglycine