ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C12029

S-ribosyl-L-homocysteine

C12324

autoinducer 2

C4674

glutathione disulfide

C11873

N-succinyl-L,L-2,6-diaminopimelate

C12494

N-acetyl-D-muramate 6-phosphate

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C10274

5-amino-6-(5-phospho-D-ribosylamino)uracil

C12390

D-erythro-imidazole-glycerol-phosphate

C12178

histidinal

C13909

CDP-glycerol

C1002

anthranilate

C11946

N-(5-phosphoribosyl)-anthranilate

C11604

thiamine diphosphate

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C11606

thiamine phosphate

C1102

O-acetyl-L-serine

C12125

imidazole acetol-phosphate

C1325

4-amino-4-deoxychorismate

C11932

N-acetyl-D-galactosamine 6-phosphate

C15282

D-galactosamine-6-phosphate

C12394

6-phospho D-glucono-1,5-lactone

C3656

D-gluconate 6-phosphate

C11539

xanthine

C13283

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

C13284

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

C12350

7,8-diaminopelargonate

C12355

dethiobiotin

C9422

nicotinate adenine dinucleotide

C6614

O-ureido-L-homoserine

C932

canavaninosuccinate

C12056

L-arginino-succinate

C933

L-canavanine

C12848

N5-carboxyaminoimidazole ribonucleotide

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C12048

γ-L-glutamyl 5-phosphate

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C1010

ammonia

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C9431

1,2-dihydro-β-NADP

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C13702

1-piperideine 6-carboxylate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C11800

(R)-pantothenate

C1268

(R)-4'-phosphopantothenate

C12096

isochorismate

C12337

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

C6444

oxaloacetate

C14924

carboxyphosphate

C11654

selenophosphate

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C12492

1,6-anhydro-N-acetyl-β-muramate

C11483

glycolate

C12162

hydrogen peroxide

C11802

4'-phosphopantetheine

C2191

carbamoyl phosphate

C12352

(S)-dihydroorotate

C1108

acetyl phosphate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C11760

prephenate

C11652

shikimate 3-phosphate

C13689

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

C1363

(4,5-dihydro-5-oxofuran-2-yl)-acetate

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C11874

N-succinyl-2-amino-6-ketopimelate

C14074

prenyl diphosphate

C12364

isopentenyl diphosphate

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C11737

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

C1353

3-phosphooxypyruvate

C12044

L-histidinol phosphate

C12176

histidinol

C1184

5-phospho-β-D-ribosylamine

C13635

β-D-ribosylnicotinate

C11826

oxalosuccinate

C11479

phosphoenolpyruvate

C873

coproporphyrinogen III

C13627

DNA without lesion

C13257

carboxynorspermidine

C11849

norspermidine

C1078

(S)-2-amino-6-oxohexanoate

C7865

urea

C1196

S-methyl-5'-thioadenosine

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C1110

N4-(β-N-acetyl-D-glucosaminyl)-L-asparagine

C11934

N-acetyl-β-glucosaminylamine

C1538

2-C-methyl-D-erythritol 4-phosphate

C3295

2-keto-D-gluconate

C1454

2,5-didehydro-D-gluconate

C1438

(2S)-2-isopropylmalate

C13417

2-isopropylmaleate

C1530

(2R,3S)-3-isopropylmalate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C3319

4-methyl-2-oxopentanoate

C506

3-ethylmalate

C3259

2-oxovalerate

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C3417

(S)-3-methyl-2-oxopentanoate

C3262

3-methyl-2-oxobutanoate

C6359

(S)-2-acetolactate

C6369

(S)-2-aceto-2-hydroxybutanoate

C10349

glycerone phosphate

C11832

orotidine 5'-phosphate

C11723

L-quinate

C12369

3-dehydroquinate

C11653

shikimate

C1431

3-dehydroshikimate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C11930

N-acetylglutamyl-phosphate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C928

CO2

C11857

β-nicotinate D-ribonucleotide

C11715

quinolinate

C891

citrate

C12218

α-D-glucosamine 1-phosphate

C11543

H2O

C10799

DNA with lesion

C12247

L-homocysteine

C3865

phosphonoacetaldehyde

C12116

(2-aminoethyl)phosphonate

C6624

protoheme

C7676

protoporphyrin IX

C7658

uroporphyrinogen-III

C7666

protoporphyrinogen IX

C7118

hydrogen sulfide

C7121

oxygen

C6599

2-iminobutanoate

C6708

2-iminopropanoate

C6596

2-iminosuccinate

C11281

2-chloroacetate

C8419

sn-glycerol 3-phosphate

C6437

3-phospho-D-glyceroyl-phosphate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C2017

α-D-glucosamine 6-phosphate

C6617

N-acetyl-D-mannosamine 6-phosphate

C13354

preQ0

C7306

5'-deoxy-5'-fluoroadenosine

C7314

5-fluoro-5-deoxy-D-ribose 1-phosphate

C5546

5'-chloro-5'-deoxyadenosine

C11254

5-chloro-5-deoxyribose 1-phosphate

C11510

5-chloro-5-deoxy-D-ribonate

C3337

5-chloro-4-hydroxy-2-oxopentanoate

C7864

Fe3+

C4320

H+

C4328

ammonium

C10999

Cd2+

C11005

Zn2+

C11006

Co2+

C11023

Fe2+

C7025

OH-

C7022

selenide

C8958

superoxide

C7036

hydrogencarbonate

C6097

phosphate

C6093

diphosphate

C7006

chloride

C8965

hydroxyl radical

C6524

2-aminoprop-2-enoate

C6526

(2Z)-2-aminobut-2-enoate

C10301

agmatine

C3548

putrescine

C3574

spermidine

C3998

methanethiol

C4678

glutathione

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C4580

(R)-S-lactoylglutathione

C4981

CoA-disulfide

C4937

3'-dephospho-CoA

C4901

succinyl-CoA

C4913

malonyl-CoA

C5316

(R)-2-hydroxyglutaryl-CoA

C4927

(E)-glutaconyl-CoA

C5298

acetyl-CoA

C5635

oleoyl-CoA

C11195

18-hydroxylinoleoyl-CoA

C491

18-hydroxyoleoyl-CoA

C5637

cis-vaccenoyl-CoA

C5651

palmitoleoyl-CoA

C5890

myristoyl-CoA

C5892

palmitoyl-CoA

C6562

hexadecanedioyl-CoA

C10982

nicotinate

C10994

thiamine

C10988

riboflavin

C7134

tetrahydropteroyl tri-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C10049

FMNH2

C10052

FMN

C5394

(R)-NADHX

C5392

(S)-NADHX

C14497

NADPH

C14500

NADH

C4018

NADP+

C4020

NAD+

C7807

dGDP

C7823

dADP

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C7848

2'-deoxyguanosine

C7840

dGMP

C7743

dAMP

C7759

ITP

C7649

isoguanine

C7647

8-oxo-dGTP

C7655

8-oxo-GTP

C7811

XMP

C7741

IMP

C7785

hypoxanthine

C7827

GMP

C7783

dATP

C7751

dGTP

C5552

5'-deoxyadenosine

C7813

2'-deoxyadenosine

C7755

2'-deoxyinosine

C7745

GTP

C10267

pppGpp

C7795

GDP

C10266

ppGpp

C10288

adenylo-succinate

C7809

AMP

C7757

ADP

C7844

ATP

C15094

xanthosine

C15085

guanosine

C15088

adenosine

C15091

inosine

C2706

uridine

C2702

cytidine

C2523

2'-deoxycytidine

C2527

2'-deoxyuridine

C2519

thymidine

C1817

cyclic di-3',5'-guanylate

C10290

5-hydroxy-CTP

C10280

5-hydroxy-CMP

C10284

2-hydroxy-dATP

C8772

dCTP

C8724

dUTP

C8764

dTTP

C8760

UTP

C8761

CTP

C8755

dCMP

C8770

dUMP

C8744

dTMP

C2245

CMP

C2241

UMP

C8733

dCDP

C8720

dTDP

C8732

CDP

C8714

UDP

C4243

β-nicotinamide D-ribonucleotide

C9444

2-sulfanyl-N6-dimethylallyladenosine37 in tRNA

C9443

2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA

C10263

ADP-α-D-glucose

C9540

preQ1

C8739

uracil

C10601

thymine

C9454

adenine

C9455

guanine

C7780

UDP-α-D-glucose

C1939

dTDP-α-D-glucose

C7722

UDP-α-D-glucuronate

C8666

UDP-α-D-galactose

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7822

UDP-N-acetyl-α-D-muramate

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7824

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C7444

UDP-N-acetyl-α-D-glucosamine

C1930

dTDP-β-L-rhamnose

C1896

dTDP-4-dehydro-β-L-rhamnose

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C10614

coenzyme A

C4985

(S)-1-pyrroline-5-carboxylate

C15044

reduced riboflavin

C11481

orotate

C3093

urate

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C11409

2,3-dihydroxybenzoate

C11421

protocatechuate

C8974

4-aminobenzoate

C2040

diacetyl

C6090

methylglyoxal

C3485

butan-1-al

C3500

acetaldehyde

C9494

D-glyceraldehyde

C2108

β-D-galactopyranose

C2109

α-D-galactopyranose

C3449

butan-1-ol

C4086

1-(β-D ribofuranosyl)nicotinamide

C10688

maltotriose

C10689

maltotetraose

C10692

maltoheptaose

C10691

maltohexaose

C10690

maltopentaose

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C15288

N-acetylmuramate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C5286

N-acetyl-β-D-glucosamine

C11625

1-O-acetyl-α-maltose

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C10370

a peptidoglycan dimer (E. faecium, tetrapeptide)

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C14595

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

C13226

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

C13222

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

C3130

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

C3124

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

C3135

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

C3131

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C8811

α-D-glucopyranose 1-phosphate

C5615

D-glyceraldehyde 3-phosphate

C10340

D-erythrose 4-phosphate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C15289

D-sedoheptulose 7-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10326

β-D-fructose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C2989

β-D-fructofuranose 6-phosphate

C8704

D-xylulose 5-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C10604

D-ribulose 5-phosphate

C2057

α-D-ribose-1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C10025

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

C6241

1-oleoyl-sn-glycerol 3-phosphate

C10024

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

C6239

1-myristoyl-sn-glycerol 3-phosphate

C6240

1-palmitoyl-sn-glycerol 3-phosphate

C6242

1-cis-vaccenoyl-sn-glycerol-3-phosphate

C3826

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

C3816

1,2-dimyristoyl-sn-glycerol 3-phosphate

C3822

1-palmitoyl-2-myristoyl phosphatidate

C3117

dioleoyl phosphatidate

C3119

1,2-dicis-vaccenoyl-phosphatidate

C3512

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

C3542

1-palmitoyl-2-cis-vaccenoyl phosphatidate

C3510

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

C3514

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

C9304

trans,octacis-decaprenyl phosphate

C8322

di-trans,octa-cis-undecaprenyl phosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C8033

5-amino-4-imidazolecarboxyamide

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8950

chorismate

C6442

succinate

C5596

L-aspartate

C6443

fumarate

C2802

(S)-malate

C8536

3-carboxy-cis,cis-muconate

C8534

cis-aconitate

C8531

D-threo-isocitrate

C6371

3-oxoadipate

C3308

pyruvate

C3301

2-oxoglutarate

C3257

2-oxobutanoate

C11517

acetate

C3421

formate

C6185

(R)-lactate

C6423

(R)-2-hydroxybutanoate

C3383

palmitate

C3536

L-α-amino-ε-keto-pimelate

C5032

carbamate

C5579

L-serine

C5612

L-cysteine

C5573

L-tyrosine

C5643

L-asparagine

C5577

L-threonine

C5609

L-glutamine

C12067

glycine

C5605

L-histidine

C5642

L-arginine

C5584

L-lysine

C5607

L-glutamate

C5597

L-alanine

C5588

L-leucine

C5581

L-proline

C5575

L-tryptophan

C5571

L-valine

C5603

L-isoleucine

C5583

L-methionine

C8797

D-glutamate

C8805

D-aspartate

C8799

D-alanine

C5595

L-cystathionine

C12231

L-ornithine

C12073

L-aspartyl-4-phosphate

C5580

L,L-diaminopimelate

C13322

N-carbamoyl-L-aspartate

C15000

N-acetyl-L-ornithine

C12065

L-saccharopine

C3402

3-phospho-L-serine

C14973

N-acetyl-L-glutamate

C10821

trans-4-hydroxy-L-proline

C11955

O-acetyl-L-homoserine

C12303

L-citrulline

C12229

O-phospho-L-homoserine

C12237

L-canaline

C12233

L-glutamate-5-semialdehyde

C12245

L-homoserine

C12227

O-succinyl-L-homoserine

C12203

S-adenosyl-L-homocysteine

C15292

S-adenosyl-L-methionine

C12239

L-aspartate 4-semialdehyde

C5585

meso-diaminopimelate

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C1434

D-alanyl-D-alanine

C6530

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine