an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
(2R,3S)-3-methylmalate
citraconate
urea
6-phospho D-glucono-1,5-lactone
hydrogen peroxide
quinolinate
(2S)-2-isopropyl-3-oxosuccinate
(S)-2-acetolactate
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
N-succinyl-L,L-2,6-diaminopimelate
orotidine 5'-phosphate
(S)-dihydroorotate
1,2-dihydro-β-NADP
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
ammonia
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
5-enolpyruvoyl-shikimate 3-phosphate
N-carbamoylputrescine
H2O
phosphoenolpyruvate
α-D-glucosamine 1-phosphate
formate
CO2
canavaninosuccinate
O-ureido-L-homoserine
L-arginino-succinate
L-canavanine
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
5-methylcytosine
5-phospho-β-D-ribosylamine
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
succinate semialdehyde
4-aminobutanoate
3-oxopropanoate
1,4-dihydroxy-2-naphthoyl-CoA
4-(2'-carboxyphenyl)-4-oxobutyryl-CoA
β-nicotinate D-ribonucleotide
nicotinate adenine dinucleotide
4-guanidinobutanoate
4-guanidinobutyramide
acrylate
acrylamide
(indol-3-yl)acetamide
propionamide
carbamoyl phosphate
(2R,3S)-3-isopropylmalate
2-isopropylmaleate
(2S)-2-isopropylmalate
2-succinylbenzoate
(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate
2-dehydropantoate
citrate
oxaloacetate
L-selenocystathionine
DNA without lesion
glycerone phosphate
acetyl phosphate
glycolate
D-gluconate 6-phosphate
xanthine
isochorismate
(lipoyl)adenylate
carboxyphosphate
urea-1-carboxylate
(2Z,4E)-2-hydroxyhexa-2,4-dienedioate
3-methyl-2-oxobutanoate
N-succinyl-2-amino-6-ketopimelate
(S)-2,3,4,5-tetrahydrodipicolinate
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
autoinducer 2
S-ribosyl-L-homocysteine
1-deoxy-L-glycero-tetrulose 4-phosphate
(R)-4'-phosphopantothenate
(R)-pantothenate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
N5-carboxyaminoimidazole ribonucleotide
2,5-didehydro-D-gluconate
2-keto-D-gluconate
3-hydroxypropanal
1,3-propanediol
(4,5-dihydro-5-oxofuran-2-yl)-acetate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
N1-(5-phospho-β-D-ribosyl)glycinamide
coproporphyrinogen III
4-methyl-2-oxopentanoate
(S)-3-methyl-2-oxopentanoate
D-alanyl-D-alanine
L-α-amino-ε-keto-pimelate
carbamate
L-citrulline
L-cysteine
L-methionine
L-aspartate
glycine
L-arginine
L-asparagine
L-glutamate
L-valine
L-isoleucine
L-lysine
L-glutamine
L-tyrosine
L-alanine
L-proline
L-leucine
L-canaline
L-homoserine
L-glutamate-5-semialdehyde
O-succinyl-L-homoserine
S-adenosyl-L-methionine
L-homocysteine
L-ornithine
S-adenosyl-L-homocysteine
L-aspartate 4-semialdehyde
meso-diaminopimelate
L-selenomethionine
seleno-L-homocysteine
L-aspartyl-4-phosphate
trans-4-hydroxy-L-proline
N-carbamoyl-L-aspartate
L,L-diaminopimelate
L-cystathionine
D-glutamate
D-alanine
D-aspartate
β-alanine
protocatechuate
2,3-dihydroxybenzoate
orotate
acetate
(R)-pantoate
D-gluconate
(S)-1-pyrroline-5-carboxylate
butanoate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
1,2-dicis-vaccenoyl-phosphatidate
(S)-lactate
(R)-lactate
propanoate
pyruvate
2-oxoglutarate
3-oxoadipate
3-carboxy-cis,cis-muconate
chorismate
(3E)-2-oxohex-3-enedioate
succinate
fumarate
(S)-malate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
acetamide
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
1-palmitoyl-2-myristoyl phosphatidate
1,2-dimyristoyl-sn-glycerol 3-phosphate
1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate
dioleoyl phosphatidate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-palmitoyl-sn-glycerol 3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-oleoyl-sn-glycerol 3-phosphate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
dTDP-β-L-rhamnose
dTDP-α-D-glucose
dTDP-4-dehydro-β-L-rhamnose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-α-D-galactose
UDP-α-D-glucose
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
5-phospho-α-D-ribose 1-diphosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
α-D-glucopyranose 1-phosphate
α-D-galactose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
α-D-ribose-1-phosphate
5-fluoro-5-deoxy-D-ribose 1-phosphate
2-deoxy-α-D-ribose 1-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
D-ribulose 5-phosphate
L-ribulose 5-phosphate
D-glyceraldehyde 3-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
a peptidoglycan dimer (E. faecium, tetrapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
β-D-fructofuranose
β-D-galactopyranose
α-D-galactopyranose
β-D-ribopyranose
aldehydo-D-ribose
α-D-ribofuranose
β-D-ribofuranose
glycolaldehyde
keto-D-fructose
D-xylulose
L-ribulose
glycerol
sucrose
stachyose
raffinose
ethanol
methylglyoxal
acetaldehyde
(S)-acetoin
diacetyl
adenine
guanine
AMP
GMP
IMP
XMP
ITP
GTP
ATP
GDP
ADP
dGDP
dADP
dGTP
dATP
dAMP
dGMP
hypoxanthine
adenosine
inosine
guanosine
xanthosine
2'-deoxyinosine
2'-deoxyguanosine
2'-deoxyadenosine
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydromonapterin
7,8-dihydroneopterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
reduced riboflavin
FMNH2
riboflavin
FMN
uracil
cytosine
thymine
dTDP
UDP
dTMP
dUMP
CTP
UTP
CDP
dCDP
dUDP
dTTP
dCMP
dCTP
dUTP
UMP
CMP
uridine
cytidine
2'-deoxycytidine
thymidine
2'-deoxyuridine
5-fluorouracil
coenzyme A
(R)-lipoate
adenylo-succinate
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
ppGpp
pppGpp
5'-deoxyadenosine
5-hydroxy-CMP
5-hydroxy-CTP
cyclic di-3',5'-guanylate
NAD+
NADP+
NADH
NADPH
5'-deoxy-5'-fluoroadenosine
5-fluorocytosine
(S)-NADHX
(R)-NADHX
nicotinate
(indol-3-yl)acetate
malonyl-CoA
acetyl-CoA
3'-dephospho-CoA
succinyl-CoA
isobutanoyl-CoA
2-methylacetoacetyl-CoA
oleoyl-CoA
3-oxopentanoyl-CoA
acetoacetyl-CoA
palmitoleoyl-CoA
myristoyl-CoA
cis-vaccenoyl-CoA
butanoyl-CoA
propanoyl-CoA
18-hydroxylinoleoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
crotonyl-CoA
agmatine
spermidine
putrescine
2-aminoprop-2-enoate
2-iminopropanoate
hydrogencarbonate
chloride
phosphonate
phosphate
diphosphate
Fe2+
Co2+
ammonium
H+
2-chloroacetate
2-octaprenylphenol
3-(all-trans-octaprenyl)benzene-1,2-diol
(R)-citramalate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
sn-glycerol 3-phosphate
2-iminosuccinate
oxygen
uroporphyrinogen-III
protoporphyrin IX
protoporphyrinogen IX
protoheme
ethylphosphate
DNA with lesion