an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

ammonia

enol-phenylpyruvate

1,2-dihydro-β-NADP

(2S)-2-isopropyl-3-oxosuccinate

2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

sulfoethylcysteine

2-(sulfomethyl)thiazolidine-4-carboxylate

N-(5-phosphoribosyl)-anthranilate

anthranilate

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

5-(methylsulfanyl)-ribulose 1-phosphate

4'-phosphopantetheine

(R)-5-phosphomevalonate

(S)-2,3,4,5-tetrahydrodipicolinate

O-acetyl-L-serine

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

5-enolpyruvoyl-shikimate 3-phosphate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

α-D-ribose 1,5-bisphosphate

2-C-methyl-D-erythritol 4-phosphate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

3-dehydroshikimate

(R)-mevalonate

glutathione disulfide

L-selenocystathionine

DNA without lesion

creatinine

L-canavanine

histidinal

histidinol

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

(2S)-lactyl-2-diphospho-5'-guanosine

phosphoenolpyruvate

(S)-dihydroorotate

methanophenazine

dihydromethanophenazine

coenzyme B

CoB-CoM heterodisulfide

7,8-didemethyl-8-hydroxy-5-deazariboflavin

oxalate

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

canavaninosuccinate

L-arginino-succinate

CDP-glycerol

ManNAc-GlcNAc-PP-undecaprenol

oxalosuccinate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

1-deoxy-L-glycero-tetrulose 4-phosphate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

O-ureido-L-homoserine

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

4-methyl-2-oxopentanoate

nicotinate adenine dinucleotide

D-erythro-imidazole-glycerol-phosphate

hexulose 6-phosphate

5-methylcytosine

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

5-deoxy-α-ribose 1-phosphate

imidazole acetol-phosphate

L-histidinol phosphate

coproporphyrinogen III

α-D-glucosamine 1-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

formate

carbon monoxide

2-phosphoglycolate

glycolate

isopentenyl diphosphate

4-prenylphlorisobutyrophenone

prenyl diphosphate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

glycerone phosphate

thiamine phosphate

3-phosphooxypyruvate

citrate

porphobilinogen

preuroporphyrinogen

urea

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

carbonic acid

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

4-(β-D-ribofuranosyl)hydroxybenzene 5'-phosphate

shikimate

shikimate 3-phosphate

prephenate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

hydrogen peroxide

β-nicotinate D-ribonucleotide

quinolinate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-6-(D-ribitylamino)uracil

orotidine 5'-phosphate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

H₂

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

oxaloacetate

CO₂

H₂O

carbamoyl phosphate

carboxyphosphate

DNA with lesion

L-homocysteine

phenylacetate

N₂

cobalt-factor III

cobalt-precorrin-3

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

cobalt-sirohydrochlorin

cobalt-precorrin-2

uroporphyrinogen-I

protoporphyrinogen IX

uroporphyrinogen-III

siroheme

oxygen

hydrogen sulfide

2-iminosuccinate

2-iminopropanoate

2-chloroacetate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

sn-glycerol 1-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ω-saturated C55 dolichol phosphate

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

(S)-citramalate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

ammonium

H⁺

Mo²⁺

Ni²⁺

Fe²⁺

Co²⁺

nitrate

molybdate

sulfite

hydrogencarbonate

phosphate

triphosphate

diphosphate

chloride

(2E,6E)-farnesyl diphosphate

pristanate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

2-aminoprop-2-enoate

agmatine

dehydrospermidine

spermidine

putrescine

tyramine

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

S-(hydroxymethyl)glutathione

glutathione

methanethiol

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

sulfoacetaldehyde

L-cysteate

3-sulfopyruvate

coenzyme M

(2R)-3-sulfolactate

(2R)-phospho-3-sulfolactate

(R)-S-lactoylglutathione

α-linolenoyl-CoA

linoleoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3'-dephospho-CoA

phenylacetyl-CoA

isobutanoyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

phytenoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

octanoyl-CoA

lauroyl-CoA

decanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

methane

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

glycocholate

cholate

nicotinate

riboflavin

5-formyl-tetrahydromethanopterin

N⁵-methyltetrahydromethanopterin

tetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

5,10-methenyltetrahydromethanopterin

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

FMNH₂

FMN

FAD

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

menaquinol-8

demethylmenaquinol-8

glycine betaine

dGDP

dIDP

dITP

IDP

ITP

dADP

GMP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

dATP

dGTP

cyclic-AMP

5'-deoxyadenosine

XMP

hypoxanthine

GTP

IMP

GDP

adenylo-succinate

ADP

ATP

AMP

5-fluorocytosine

5-fluorouracil

adenosine

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

dTTP

dUTP

dCTP

CTP

UTP

dCMP

dUMP

dTMP

CMP

UMP

dTDP

dUDP

dCDP

CDP

UDP

β-nicotinamide D-ribonucleotide

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

cytosine

thymine

uracil

adenine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

molybdopterin

methyl-CoM

coenzyme A

oxidized coenzyme F₄₂₀-0

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

precorrin-8x

precorrin-1

precorrin-2

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 2'-phosphate

7,8-dihydroneopterin

7,8-dihydroneopterin 3'-phosphate

cyclic pyranopterin phosphate

molybdopterin adenine dinucleotide

7,8-dihydroneopterin 2',3'-cyclic phosphate

7,8-dihydroneopterin 3'-triphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

4-hydroxybenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

diacetyl

methylglyoxal

glycolaldehyde

acetaldehyde

formaldehyde

(S)-lactaldehyde

D-glyceraldehyde

α-D-ribofuranose

1D-myo-inositol 3-monophosphate

keto-D-fructose

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-glucose 6-phosphate

α-D-galactose 1-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-fructofuranose 1-phosphate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

saturated CDP-archaeol

unsaturated CDP-archaeol

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

saturated archaetidylserine

saturated archaetidylethanolamine

unsaturated archaetidylserine

unsaturated archaetidylethanolamine

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

geranyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

phlorisovalerophenone

deoxyhumulone

deoxycohumulone

4-prenylphlorisovalerophenone

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

(3E)-2-oxohex-3-enedioate

chorismate

succinate

L-aspartate

fumarate

(S)-malate

α,ω-9Z-octadecenedioate

(2R)-homocitrate

(1R,2S)-homoisocitrate

cis-homoaconitate

D-threo-isocitrate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

pyruvate

2-oxoglutarate

octanoate

7-hydroxylaurate

laurate

decanoate

(S)-lactate

(15Z)-tetracosenoate

oleate

α-linolenate

linoleate

stearate

palmitate

phytenate

acetate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

L-cysteine

glycine

L-tyrosine

L-threonine

L-glutamine

L-histidine

L-lysine

L-arginine

L-glutamate

L-methionine

L-phenylalanine

L-isoleucine

L-valine

L-leucine

L-tryptophan

creatine

D-glutamate

L-cystathionine

L,L-diaminopimelate

L-ornithine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

seleno-L-homocysteine

3-phospho-L-serine

N-acetyl-L-methionine

N-acetyl-L-glutamate

O-acetyl-L-homoserine

L-citrulline

O-phospho-L-homoserine

L-canaline

S-adenosyl-L-homocysteine

L-homoserine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

meso-diaminopimelate