an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

ammonia

enol-phenylpyruvate

1,2-dihydro-β-NADP

aminoacetone

1-piperideine 6-carboxylate

selenodiglutathione

glutathioselenol

hydrogen selenide

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropyl-3-oxosuccinate

(R)-4'-phosphopantothenate

(R)-pantothenate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

N-succinyl-L,L-2,6-diaminopimelate

(S)-dihydroorotate

orotidine 5'-phosphate

glutathione disulfide

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

4-methyl-2-oxopentanoate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

N¹-(5-phospho-β-D-ribosyl)glycinamide

N-carbamoylputrescine

citrate

1-deoxy-L-glycero-tetrulose 4-phosphate

glycolate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

nicotinate adenine dinucleotide

DNA without lesion

(2-hydroxyphenyl)acetate

carbonic acid

acetoacetate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

5-enolpyruvoyl-shikimate 3-phosphate

S-methyl-5'-thioadenosine

isoquinoline

isoquinolin-2(1H)-one

homogentisate

4-maleyl-acetoacetate

D-erythro-imidazole-glycerol-phosphate

(S)-2-acetolactate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

urea

4-imidazolone-5-propanoate

urocanate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

thiamine phosphate

5-phospho-β-D-ribosylamine

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

S-adenosyl 3-(methylsulfanyl)propylamine

pimeloyl-CoA

8-amino-7-oxononanoate

phosphocholine

2-dehydropantoate

hydrogen peroxide

porphobilinogen

preuroporphyrinogen

coproporphyrinogen III

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

carbamoyl phosphate

carboxyphosphate

7-carboxy-7-deazaguanine

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

prephenate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

3-deoxy-α-D-manno-2-octulosonate

(S)-2-amino-6-oxohexanoate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

2-dehydro-3-deoxy-D-gluconate

selenophosphate

CO₂

oxaloacetate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

glycerone phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

phosphoenolpyruvate

H₂O

DNA with lesion

L-homocysteine

ethylphosphate

hydrogen cyanide

Mg-protoporphyrin

protoheme

uroporphyrinogen-I

uroporphyrinogen-III

protoporphyrin IX

protoporphyrinogen IX

oxygen

hydrogen sulfide

2-iminobutanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

preQ₀

(indole-3-yl)acetonitrile

Fe³⁺

H⁺

ammonium

Fe²⁺

Mg²⁺

sulfate

hydrogensulfite

selenite

OH^-

superoxide

thiosulfate

sulfite

selenide

hydrogencarbonate

selenate

phosphonate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

glycine betaine

choline

(2Z)-2-aminobut-2-enoate

agmatine

spermidine

putrescine

S-(hydroxymethyl)glutathione

glutathione

thiocyanate

methanethiol

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

isovaleryl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

4-hydroxybenzoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

4-hydroxybutanoyl-CoA

malonyl-CoA

dihomo γ-linolenoyl-CoA

phenylacetyl-CoA

3'-dephospho-CoA

2-trans, 4-cis-undecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

(R)-methylmalonyl-CoA

(2E)-dec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

octanoyl-CoA

decanoyl-CoA

lauroyl-CoA

palmitoyl-CoA

myristoyl-CoA

icosanoyl-CoA

stearoyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

3-oxoadipyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

brassicasterol 3-O-β-D-glucoside

β-sitosterol 3-O-β-D-glucoside

cholesteryl-β-D-glucoside

ergosterol 3-O-β-D-glucoside

solasodine 3-O-β-D-glucoside

stigmasterol 3-O-β-D-glucoside

cholesterol

ergosterol

solasodine

(indol-3-yl)acetate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinone

caldariellaquinol

isoguanine

8-oxo-dGTP

8-oxo-GTP

adenylo-succinate

IMP

XMP

GMP

5'-deoxyadenosine

hypoxanthine

dADP

dATP

IDP

ITP

dIDP

dITP

dGDP

dGTP

AMP

GTP

GDP

ATP

ADP

adenosine

2'-deoxycytidine

thymidine

2'-deoxyuridine

2-hydroxy-dATP

5-hydroxy-CTP

dTTP

dCTP

dUTP

UTP

CTP

dUMP

dTMP

CMP

UMP

dTDP

dCDP

dUDP

CDP

UDP

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

preQ₁

adenine

CDP-choline

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-α-D-glucuronate

coenzyme A

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-2

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

6-carboxy-5,6,7,8-tetrahydropterin

orotate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-aminobenzoate

diacetyl

methylglyoxal

1-octanal

formaldehyde

acetaldehyde

D-glyceraldehyde

ethanol

methanol

1-octanol

glycerol

keto-D-fructose

N-acetyl-β-D-glucosamine

D-xylulose

β-D-fructofuranose

4-deoxy-L-erythro-hex-4-enopyranuronate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

β-D-fructofuranose 1-phosphate

brassicasterol

sitosterol

stigmasterol

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

chorismate

L-aspartate

succinate

fumarate

(S)-malate

cis-aconitate

D-threo-isocitrate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

pyruvate

2-oxobutanoate

2-oxoglutarate

glyoxylate

acetate

formate

(R)-lactate

octanoate

decanoate

laurate

4-hydroxybutanoate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

palmitate

myristate

arachidate

stearate

oleate

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

di-homo-γ-linolenate

(R)-pantoate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

L-cysteine

L-threonine

L-asparagine

L-tyrosine

glycine

L-glutamine

L-lysine

L-arginine

L-glutamate

L-methionine

L-valine

L-tryptophan

L-leucine

L-alanine

L-proline

β-alanine

D-glutamate

L-aspartyl-4-phosphate

L,L-diaminopimelate

L-cystathionine

L-ornithine

N-carbamoyl-L-aspartate

L-saccharopine

L-2-amino-3-oxobutanoate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate