an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

L-dehydro-ascorbate

α-D-galacturonate 1-phosphate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

4-amino-2-methyl-5-pyrimidinemethanol

N⁵-carboxyaminoimidazole ribonucleotide

hydrogen peroxide

2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-5-[1-α -D- ribofuranosyl 5-phosphate]-D-ribitol

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-5-[1-α -D- ribofuranosyl triphosphate]-D-ribitol

S-ribosyl-L-homocysteine

autoinducer 2

sulfoethylcysteine

2-(sulfomethyl)thiazolidine-4-carboxylate

(S)-2,3,4,5-tetrahydrodipicolinate

acetyl phosphate

5,6-dimethylbenzimidazole

dialurate

(R)-1-amino-2-propanol O-2-phosphate

(2R,3S)-3-methylmalate

citraconate

ammonia

DNA without lesion

hydroxylamine

(2S)-lactyl-2-diphospho-5'-guanosine

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

(L-threonylcarbamoyl)adenylate

pseudouridine 5'-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

L-canavanine

3-deoxy-D-arabino-heptulosonate 7-phosphate

creatinine

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

4-amino-4-deoxychorismate

urea

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanal

4-acetamidobutanoate

γ-L-glutamyl 5-phosphate

nicotinate adenine dinucleotide

(R)-mevalonate

(R)-5-phosphomevalonate

carbonic acid

hexulose 6-phosphate

shikimate 3-phosphate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

hydrogenobyrinate

itaconate

α-ribazole

α-ribazole 5'-phosphate

shikimate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

selenophosphate

5-amino-6-(D-ribitylamino)uracil

7,8-didemethyl-8-hydroxy-5-deazariboflavin

oxalate

coproporphyrinogen III

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

orotidine 5'-phosphate

D-erythro-imidazole-glycerol-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

(R)-2,3-dihydroxy-3-methylpentanoate

glycerone phosphate

hydrogenobyrinate a,c-diamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

arsenite

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N-acetyl-L-glutamate 5-semialdehyde

(S)-4-amino-5-oxopentanoate

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

N-acetylglutamyl-phosphate

prenyl diphosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

phosphoenolpyruvate

carbamoyl phosphate

3-phosphooxypyruvate

pimelate

pimeloyl-CoA

8-amino-7-oxononanoate

7,8-diaminopelargonate

L-tartrate

oxaloacetate

prephenate

3-dehydroquinate

3-dehydroshikimate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

isopentenyl diphosphate

5-enolpyruvoyl-shikimate 3-phosphate

5-aminolevulinate

dethiobiotin

imidazole acetol-phosphate

L-histidinol phosphate

(2S)-2-isopropylmalate

2-isopropylmaleate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

thiamine diphosphate

α-D-glucosamine 1-phosphate

coenzyme B

methanophenazine

CoB-CoM heterodisulfide

dihydromethanophenazine

β-D-ribosylnicotinate

(S)-dihydroorotate

anthranilate

N-(5-phosphoribosyl)-anthranilate

carbon monoxide

histidinal

histidinol

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

CO₂

β-nicotinate D-ribonucleotide

quinolinate

porphobilinogen

preuroporphyrinogen

L-β-lysine

H₂

H₂O

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2,3-dioxo-L-gulonate

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

dehydroascorbate (bicyclic form)

pyruvic oxime

4-(β-D-ribofuranosyl)-N-succinylaminobenzene 5'-phosphate

4-(β-D-ribofuranosyl)hydroxybenzene 5'-phosphate

(4-hydroxyphenyl)acetate

(2E,6E)-farnesyl diphosphate

monodehydroascorbate radical

thiocyanate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

sulfoacetaldehyde

L-cysteate

3-sulfopyruvate

coenzyme M

(2R)-3-sulfolactate

(2R)-phospho-3-sulfolactate

sulfate

sulfite

selenate

selenide

thiosulfate

hydrogensulfite

hydrogencarbonate

molybdate

phosphate

triphosphate

diphosphate

ammonium

H⁺

Co²⁺

Ca²⁺

Fe²⁺

Mo²⁺

glycine betaine

agmatine

putrescine

dehydrospermidine

spermidine

tyramine

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

methane

phenylacetate

2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

isobutanoyl-CoA

2-methylacetoacetyl-CoA

3'-dephospho-CoA

itaconyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

phenylacetyl-CoA

succinyl-CoA

acetyl-CoA

propanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

L-galactono-1,4-lactone

FAD

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

molybdopterin

tetrahydrosarcinapterin

5-methyl-tetrahydrosarcinapterin

methyl-CoM

coenzyme A

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

oxidized coenzyme F₄₂₀-0

demethylated 7,8-dihydromethanopterin

7,8-dihydromethanopterin

5,10-methylene-tetrahydromethanopterin

N⁵-methyltetrahydromethanopterin

tetrahydromethanopterin

5,10-methenyltetrahydromethanopterin

5-formyl-tetrahydromethanopterin

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

7,8-dihydrofolate monoglutamate

L-ascorbate

nicotinate

riboflavin

pyridoxal 5'-phosphate

menadione

adenosylcobalamin

cobalt-precorrin-3

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-4

precorrin-6A

precorrin-3A

precorrin-1

cobalt-precorrin-5A

precorrin-6B

precorrin-7

precorrin-8x

cobalt-precorrin-5B

cobalt-precorrin-6A

precorrin-3B

precorrin-2

cobalt-precorrin-2

precorrin-4

precorrin-5

cobyrinate

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

molybdopterin adenine dinucleotide

7,8-dihydroneopterin 2'-phosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-D-ribitol 5'-phosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-D-ribitol

7,8-dihydroneopterin 2',3'-cyclic phosphate

7,8-dihydroneopterin 3'-triphosphate

cyclic pyranopterin phosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

adenine

2'-deoxyadenosine

2'-deoxyguanosine

guanosine

inosine

xanthosine

adenosine

dAMP

dGMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

GMP

IMP

XMP

AMP

ITP

GTP

ATP

dCMP

uracil

orotate

UDP

dUDP

dTTP

dCDP

CDP

dUTP

dCTP

dUMP

dTMP

dTDP

UTP

CTP

UDP-α-D-galacturonate

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-4-dehydro-β-L-rhamnose

cytidine

uridine

2'-deoxyuridine

2'-deoxycytidine

thymidine

thymine

CMP

UMP

hydrogen cyanide

salicylaldehyde

4-hydroxybenzoate

benzaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

4-methylphenol

salicylate

4-aminobenzoate

benzoate

L-α-amino-ε-keto-pimelate

L-cysteine

L-threonine

L-tyrosine

glycine

L-serine

L-asparagine

L-glutamine

L-arginine

L-histidine

L-lysine

L-aspartate

L-glutamate

L-phenylalanine

L-tryptophan

D-alanine

L-aspartyl-4-phosphate

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-citrulline

L-ornithine

L-canaline

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-homocysteine

meso-diaminopimelate

L-methionine

L-proline

L-valine

L-leucine

L-isoleucine

L-alanine

L,L-diaminopimelate

creatine

(3E)-2-oxohex-3-enedioate

chorismate

fumarate

succinate

(S)-malate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

(S)-lactate

(R)-lactate

(S)-2-hydroxyglutarate

(R)-glycerate

pyruvate

acetate

formate

propanoate

octanoate

apo-4'-lycopenoate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

glyoxylate

2-oxobutanoate

2-oxoglutarate

diacetyl

(R)-acetoin

glycolaldehyde

1-octanal

acetaldehyde

formaldehyde

(S)-lactaldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

saturated CDP-archaeol

unsaturated CDP-archaeol

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

phytyl diphosphate

3-octaprenyl-4-hydroxybenzoate

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

sucrose

keto-D-fructose

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose

sucrose 6^F-phosphate

GDP-α-D-mannose

ADP ribose 1'',2''-cyclic phosphate

ADP ribose 1''-phosphate

ADP-D-ribose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

aldehydo-L-galactonate

L-gulonate

cyclic-AMP

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

β-nicotinamide D-ribonucleotide

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

γ-L-glutamyl-L-cysteine

DNA with lesion

cobalt-factor III

adenosyl-cobinamide phosphate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

cob(II)yrinate c-monoamide

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

cob(II)yrinate a,c-diamide

cobalt-sirohydrochlorin

N₂

protoporphyrinogen IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

siroheme

oxygen

sn-glycerol 1-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

(R)-citramalate

5,10-methenyltetrahydrofolate mono-L-glutamate

2-octaprenylphenol