an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
porphobilinogen
preuroporphyrinogen
glycerone phosphate
CO2
(S)-dihydroorotate
O-ureido-L-homoserine
canavaninosuccinate
L-arginino-succinate
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
coenzyme B
methanophenazine
CoB-CoM heterodisulfide
dihydromethanophenazine
5-amino-6-(D-ribitylamino)uracil
(2S)-2-isopropylmalate
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-3-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
H2O
L-dehydro-ascorbate
α-D-galacturonate 1-phosphate
L-xylo-hex-3-ulono-1,4-lactone
L-gulono-1,4-lactone
(2S)-2-isopropyl-3-oxosuccinate
4-methyl-2-oxopentanoate
shikimate
3-dehydroshikimate
sulfoethylcysteine
2-(sulfomethyl)thiazolidine-4-carboxylate
(R)-mevalonate diphosphate
1,4-dihydroxy-2-naphthoate
(2R,3S)-3-methylmalate
2-carboxy-L-threo-pentonate
citraconate
2-carboxy-L-xylonolactone
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
2,3-dioxo-L-gulonate
S-ribosyl-L-homocysteine
enol-phenylpyruvate
autoinducer 2
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
dehydroascorbate (bicyclic form)
pyruvic oxime
ammonia
adenosine 5'-phosphosulfate
2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one
1-deoxy-L-glycero-tetrulose 4-phosphate
N5-carboxyaminoimidazole ribonucleotide
hydrogenobyrinate a,c-diamide
2-oxopent-4-enoate
(S)-4-hydroxy-2-oxopentanoate
deethylsimazine
N-ethylammeline
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
oxalate
urea
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
2-dehydro-3-deoxy-D-gluconate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
DNA without lesion
3-β-hydroxyandrost-5-en-17-one 3-sulfate
estrone 3-sulfate
4-prenylphlorisobutyrophenone
3-(O-geranylgeranyl)-sn-glycerol 1-phosphate
xanthine
quinolinate
oxalosuccinate
β-nicotinate D-ribonucleotide
hydrogen peroxide
4-amino-4-deoxychorismate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA
(S)-2,3,4,5-tetrahydrodipicolinate
2-dehydropantoate
coenzyme F390-A
hydroxylamine
creatinine
hydrogenobyrinate
acetyl phosphate
5-amino-6-(5-phospho-D-ribitylamino)uracil
5-amino-6-(5-phospho-D-ribosylamino)uracil
carbonic acid
7,8-didemethyl-8-hydroxy-5-deazariboflavin
(2S)-lactyl-2-diphospho-5'-guanosine
(R)-4'-phosphopantothenate
(R)-4'-phosphopantothenoyl-L-cysteine
hexulose 6-phosphate
β-L-arabinose 1-phosphate
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
3-deoxy-D-arabino-heptulosonate 7-phosphate
3-dehydroquinate
histidinal
histidinol
D-erythro-imidazole-glycerol-phosphate
arsenite
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
thiamine phosphate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
hydrogen selenide
O-acetyl-L-serine
shikimate 3-phosphate
4'-phosphopantetheine
N-acetyl-L-glutamate 5-semialdehyde
N-acetylglutamyl-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
L-canavanine
isopentenyl diphosphate
prenyl diphosphate
(R)-mevalonate
(R)-5-phosphomevalonate
pseudouridine 5'-phosphate
selenophosphate
indole-3-ethanol
orotidine 5'-phosphate
(indol-3-yl)pyruvate
(indol-3 yl)acetyl-CoA
N-(5-phosphoribosyl)-anthranilate
anthranilate
prephenate
3-phosphooxypyruvate
oxaloacetate
(S)-4-amino-5-oxopentanoate
5-aminolevulinate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
carbamoyl phosphate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
phosphoenolpyruvate
H2
imidazole acetol-phosphate
L-histidinol phosphate
(2E,6E)-farnesyl diphosphate
pristanate
N-acetyl-L-glutaminyl-L-glutamine
N-acetyl-L-glutaminyl-L-glutamine amide
γ-L-glutamyl-L-cysteine
D-alanyl-D-alanine
L-homocysteine
DNA with lesion
cobalt-precorrin-2
cobalt-sirohydrochlorin
cobalt-precorrin-7
cobalt-precorrin-8
cobalt-precorrin-6B
cobalt-factor III
cobalt-precorrin-3
cobalt-precorrin-5B
cobalt-precorrin-6A
cob(II)yrinate c-monoamide
cob(II)yrinate a,c-diamide
cobyrinate
adenosyl-cobinamide phosphate
adenosylcobinamide-GDP
cobalt-precorrin-4
cobalt-precorrin-5A
adenosyl-cob(III)yrinate a,c-diamide
adenosylcobyrate
N2
uroporphyrinogen-I
uroporphyrinogen-III
siroheme
oxygen
hydrogen sulfide
sn-glycerol 1-phosphate
3-phospho-D-glyceroyl-phosphate
2,3-diphospho-D-glycerate
(R)-glycerate
3-phospho-D-glycerate
2-phospho-D-glycerate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
(2S)-2-phospholactate
(2R)-2,3-dihydroxy-3-methylbutanoate
(R)-citramalate
2-octaprenylphenol
monodehydroascorbate radical
methanethiol
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
coenzyme M
sulfoacetaldehyde
L-cysteate
3-sulfopyruvate
(2R)-3-sulfolactate
(2R)-phospho-3-sulfolactate
sulfate
sulfite
selenide
thiosulfate
OH-
hydrogensulfite
hydrogencarbonate
trithionate
chloride
phosphate
triphosphate
diphosphate
Na+
ammonium
H+
Fe2+
Co2+
agmatine
dehydrospermidine
spermidine
tyramine
2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
phosphoribulosylformimino-AICAR-phosphate
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
methane
(25S)-3-oxocholest-4-en-26-oate
(25S)-3-oxocholest-4-en-26-oyl-CoA
estrone
glycocholate
cholate
3-β-hydroxyandrost-5-en-17-one
succinyl-CoA
acetyl-CoA
α-linolenoyl-CoA
linoleoyl-CoA
2-methylacetoacetyl-CoA
3'-dephospho-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
crotonyl-CoA
phytenoyl-CoA
oleoyl-CoA
(S)-3-hydroxybutanoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
(Z)-15-tetracosenoyl-CoA
butanoyl-CoA
propanoyl-CoA
octanoyl-CoA
decanoyl-CoA
palmitoyl-CoA
pristanoyl-CoA
3-oxopentanoyl-CoA
acetoacetyl-CoA
L-galactono-1,4-lactone
FAD
FMN
(S)-NADHX
(R)-NADHX
NADPH
NADH
NADP+
NAD+
caldariellaquinol
menaquinol-8
menaquinol-7
menaquinol-9
menaquinol-6
menaquinol-10
menaquinol-11
menaquinol-12
menaquinol-13
demethylmenaquinol-8
demethylmenaquinol-7
demethylmenaquinol-9
demethylmenaquinol-6
demethylmenaquinol-10
demethylmenaquinol-11
demethylmenaquinol-12
demethylmenaquinol-13
caldariellaquinone
coenzyme A
methyl-CoM
oxidized coenzyme F420-1
oxidized coenzyme F420-2
oxidized coenzyme F420-0
7,8-dihydrofolate monoglutamate
tetrahydromethanopterin
5-formyl-tetrahydromethanopterin
5,10-methylene-tetrahydromethanopterin
N5-methyltetrahydromethanopterin
5,10-methenyltetrahydromethanopterin
5,6,7,8-tetrahydrofolate
tetrahydropteroyl tri-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
riboflavin
L-ascorbate
nicotinate
thiamine
pyridoxal 5'-phosphate
precorrin-2
precorrin-8x
precorrin-1
precorrin-6B
precorrin-6A
sirohydrochlorin
6,7-dimethyl-8-(1-D-ribityl)lumazine
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydroneopterin 2'-phosphate
7,8-dihydroneopterin 3'-phosphate
7,8-dihydroneopterin
6-(hydroxymethyl)-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydroneopterin 2',3'-cyclic phosphate
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
adenine
guanine
2'-deoxyadenosine
2'-deoxyguanosine
2'-deoxyinosine
inosine
guanosine
xanthosine
adenosine
hypoxanthine
dAMP
dGMP
dITP
dGTP
dATP
dIDP
dGDP
dADP
GDP
ADP
IDP
IMP
AMP
XMP
GMP
GTP
ATP
XTP
ITP
orotate
dUDP
dTDP
dTTP
uracil
dCMP
dCDP
UDP
CDP
CTP
UTP
dCTP
dUTP
dUMP
dTMP
UDP-α-D-galacturonate
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-mannosamine
UDP-α-D-galactofuranose
UDP-α-D-glucose
UDP-α-D-galactose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-β-L-arabinopyranose
UDP-N-acetyl-α-D-glucosamine
dTDP-α-D-glucose
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
UMP
CMP
(indol-3-yl)acetaldehyde
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
4-aminobenzoate
L-α-amino-ε-keto-pimelate
L-serine
creatine
L-glutamine
glycine
L-leucine
L-glutamate
D-glutamate
L-arginine
L-lysine
L-histidine
L-aspartate
L-threonine
L-cysteine
L-tyrosine
L-asparagine
L-phenylalanine
L-tryptophan
L-aspartyl-4-phosphate
3-phospho-L-serine
N-acetyl-L-ornithine
N-acetyl-L-methionine
N-acetyl-L-glutamate
N-carbamoyl-L-aspartate
O-acetyl-L-homoserine
L-citrulline
L-isoleucine
L-valine
S-adenosyl-L-methionine
L-homoserine
L-canaline
S-sulfo-L-cysteine
L-aspartate 4-semialdehyde
L-ornithine
O-phospho-L-homoserine
S-adenosyl-L-homocysteine
meso-diaminopimelate
L-selenocysteine
L-methionine
L,L-diaminopimelate
chorismate
fumarate
succinate
(S)-malate
D-threo-isocitrate
(S)-lactate
pyruvate
acetate
formate
propanoate
butanoate
octanoate
decanoate
(15Z)-tetracosenoate
oleate
linoleate
α-linolenate
(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate
phytenate
palmitate
(R)-pantoate
aldehydo-D-glucuronate
aldehydo-D-galacturonate
3-phenyl-2-oxopropanoate
3-(4-hydroxyphenyl)pyruvate
2-oxoglutarate
2-oxobutanoate
diacetyl
6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone
3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone
glycolaldehyde
butan-1-al
isobutanal
formaldehyde
acetaldehyde
L-glyceraldehyde
D-glyceraldehyde
α-D-ribofuranose
butan-1-ol
ethanol
glycerol
(3R)-linalool
(3S)-linalool
ethylene glycol
myo-inositol
1D-myo-inositol 2-monophosphate
1D-myo-inositol 1-monophosphate
1D-myo-inositol 6-monophosphate
1D-myo-inositol 5-monophosphate
1D-myo-inositol 4-monophosphate
1D-myo-inositol 3-monophosphate
saturated CDP-archaeol
unsaturated CDP-archaeol
2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate
2,3-bis-O-phytanyl-sn-glycerol 1-phosphate
di-trans,octa-cis-undecaprenyl phosphate
geranyl diphosphate
all-trans-heptaprenyl diphosphate
geranylgeranyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
3-octaprenyl-4-hydroxybenzoate
phlorisovalerophenone
deoxyhumulone
4-prenylphlorisovalerophenone
deoxycohumulone
sucrose
β-D-fructofuranose
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
sucrose 6F-phosphate
GDP-α-D-mannose
GDP-4-dehydro-α-D-rhamnose
ADP ribose 1'',2''-cyclic phosphate
ADP ribose 1''-phosphate
ADP-D-ribose
D-glyceraldehyde 3-phosphate
α-D-glucopyranose 1-phosphate
5-phospho-α-D-ribose 1-diphosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-mannopyranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
D-ribulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
α-D-mannose 1-phosphate
aldehydo-L-galactonate
L-gulonate
5'-deoxyadenosine
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
cyclic-AMP
adenylo-succinate
β-nicotinamide D-ribonucleotide
2-iminosuccinate