ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C11543

H2O

C1002

anthranilate

C11946

N-(5-phosphoribosyl)-anthranilate

C1108

acetyl phosphate

C9422

nicotinate adenine dinucleotide

C1268

(R)-4'-phosphopantothenate

C11800

(R)-pantothenate

C12218

α-D-glucosamine 1-phosphate

C11874

N-succinyl-2-amino-6-ketopimelate

C11873

N-succinyl-L,L-2,6-diaminopimelate

C12162

hydrogen peroxide

C11483

glycolate

C12364

isopentenyl diphosphate

C11479

phosphoenolpyruvate

C12369

3-dehydroquinate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C1548

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

C928

CO2

C1631

3-amino-1-hydroxyacetone 1-phosphate

C1265

4-phosphooxy-L-threonine

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C10349

glycerone phosphate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C1184

5-phospho-β-D-ribosylamine

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C12029

S-ribosyl-L-homocysteine

C13946

5-(methylsulfanyl)-α-D-ribose

C1196

S-methyl-5'-thioadenosine

C12324

autoinducer 2

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C3656

D-gluconate 6-phosphate

C12044

L-histidinol phosphate

C12125

imidazole acetol-phosphate

C13716

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

C1528

2-dehydropantoate

C1321

4-aminobutanoate

C1198

5-dehydro-4-deoxy-D-glucarate

C11634

tartronate semialdehyde

C12325

1,4-dihydroxy-2-naphthoate

C12176

histidinol

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C11652

shikimate 3-phosphate

C1431

3-dehydroshikimate

C15215

(L-threonylcarbamoyl)adenylate

C2191

carbamoyl phosphate

C3262

3-methyl-2-oxobutanoate

C3417

(S)-3-methyl-2-oxopentanoate

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C6369

(S)-2-aceto-2-hydroxybutanoate

C6359

(S)-2-acetolactate

C3319

4-methyl-2-oxopentanoate

C13985

(R)-5-phosphomevalonate

C11964

(R)-mevalonate

C13879

(R)-mevalonate diphosphate

C14074

prenyl diphosphate

C142

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

C1102

O-acetyl-L-serine

C13854

hydrogen selenide

C11760

prephenate

C15282

D-galactosamine-6-phosphate

C11932

N-acetyl-D-galactosamine 6-phosphate

C12020

lipoamide

C12333

dihydrolipoamide

C6614

O-ureido-L-homoserine

C11930

N-acetylglutamyl-phosphate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C12178

histidinal

C12390

D-erythro-imidazole-glycerol-phosphate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C11802

4'-phosphopantetheine

C1503

2-dehydro-3-deoxy-D-gluconate 6-phosphate

C3344

2-dehydro-3-deoxy-D-gluconate

C12394

6-phospho D-glucono-1,5-lactone

C13627

DNA without lesion

C1438

(2S)-2-isopropylmalate

C11857

β-nicotinate D-ribonucleotide

C12048

γ-L-glutamyl 5-phosphate

C11604

thiamine diphosphate

C11606

thiamine phosphate

C11653

shikimate

C12174

4-amino-2-methyl-5-pyrimidinemethanol

C11715

quinolinate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C13417

2-isopropylmaleate

C1530

(2R,3S)-3-isopropylmalate

C6444

oxaloacetate

C927

carbon monoxide

C12056

L-arginino-succinate

C12494

N-acetyl-D-muramate 6-phosphate

C12492

1,6-anhydro-N-acetyl-β-muramate

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C301

dehydroprephenate

C3256

3-(cyclohexa-1,3-dien-1-yl)-2-oxopropanoate

C3298

3-[(1S)-cyclohex-3-en-1-yl)]-2-oxopropanoate

C300

L-3-cyclohex-2'-enylalanine

C11836

hydroxypyruvate

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C3343

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

C1010

ammonia

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C1434

D-alanyl-D-alanine

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C6708

2-iminopropanoate

C6596

2-iminosuccinate

C6599

2-iminobutanoate

C3536

L-α-amino-ε-keto-pimelate

C12303

L-citrulline

C12067

glycine

C5579

L-serine

C5575

L-tryptophan

C5597

L-alanine

C5607

L-glutamate

C5609

L-glutamine

C5596

L-aspartate

C5584

L-lysine

C5642

L-arginine

C5577

L-threonine

C5588

L-leucine

C5571

L-valine

C5603

L-isoleucine

C5581

L-proline

C5605

L-histidine

C5573

L-tyrosine

C5583

L-methionine

C5612

L-cysteine

C12203

S-adenosyl-L-homocysteine

C15292

S-adenosyl-L-methionine

C12247

L-homocysteine

C12239

L-aspartate 4-semialdehyde

C12229

O-phospho-L-homoserine

C12245

L-homoserine

C12231

L-ornithine

C2426

S-sulfo-L-cysteine

C12237

L-canaline

C12233

L-glutamate-5-semialdehyde

C2488

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

C5585

meso-diaminopimelate

C5592

L-selenocysteine

C12073

L-aspartyl-4-phosphate

C5595

L-cystathionine

C15000

N-acetyl-L-ornithine

C14976

N-acetyl-L-methionine

C14973

N-acetyl-L-glutamate

C8799

D-alanine

C8795

D-serine

C8797

D-glutamate

C8805

D-aspartate

C11441

β-alanine

C9077

(2E,6E)-farnesyl diphosphate

C7795

GDP

C7745

GTP

C7844

ATP

C7757

ADP

C7811

XMP

C7741

IMP

C7755

2'-deoxyinosine

C7813

2'-deoxyadenosine

C10288

adenylo-succinate

C7823

dADP

C7807

dGDP

C7785

hypoxanthine

C7827

GMP

C5552

5'-deoxyadenosine

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C7783

dATP

C7751

dGTP

C7759

ITP

C7834

dIMP

C7749

dITP

C7753

XTP

C5546

5'-chloro-5'-deoxyadenosine

C11254

5-chloro-5-deoxyribose 1-phosphate

C7809

AMP

C7848

2'-deoxyguanosine

C7840

dGMP

C7743

dAMP

C9454

adenine

C9455

guanine

C8739

uracil

C8720

dTDP

C8733

dCDP

C8752

dUDP

C8764

dTTP

C8724

dUTP

C8772

dCTP

C8744

dTMP

C8770

dUMP

C8755

dCMP

C2241

UMP

C2245

CMP

C8732

CDP

C8714

UDP

C8760

UTP

C8761

CTP

C14500

NADH

C14497

NADPH

C4020

NAD+

C4018

NADP+

C7780

UDP-α-D-glucose

C1939

dTDP-α-D-glucose

C10263

ADP-α-D-glucose

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7822

UDP-N-acetyl-α-D-muramate

C5849

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C8666

UDP-α-D-galactose

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7824

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7804

UDP-α-D-galactofuranose

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C7444

UDP-N-acetyl-α-D-glucosamine

C1009

GDP-α-D-mannose

C1896

dTDP-4-dehydro-β-L-rhamnose

C1930

dTDP-β-L-rhamnose

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C15091

inosine

C15088

adenosine

C15085

guanosine

C2107

salinosporamide A

C4985

(S)-1-pyrroline-5-carboxylate

C12730

7,8-dihydroneopterin 3'-triphosphate

C12678

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12664

7,8-dihydroneopterin

C12708

7,8-dihydroneopterin 3'-phosphate

C10609

7,8-dihydropteroate

C10597

7,8-dihydrofolate monoglutamate

C7129

5,6,7,8-tetrahydrofolate

C7134

tetrahydropteroyl tri-L-glutamate

C4599

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C1867

3-demethylubiquinol-8

C1680

menaquinol-8

C5543

ubiquinol-8

C1863

demethylmenaquinol-8

C8974

4-aminobenzoate

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C4420

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

C8322

di-trans,octa-cis-undecaprenyl phosphate

C9304

trans,octacis-decaprenyl phosphate

C5383

all-trans-octaprenyl diphosphate

C9075

mono-trans,octa-cis-decaprenyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C2765

1-oleoyl-2-lyso-glycerone phosphate

C6241

1-oleoyl-sn-glycerol 3-phosphate

C3117

dioleoyl phosphatidate

C11255

5-chloro-5-deoxy-D-ribono-γ-lactone

C2598

D-glucono-1,5-lactone

C5298

acetyl-CoA

C5314

2-methylacetoacetyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C5260

(+)-7-epi-jasmonoyl-CoA

C5188

dihomo γ-linolenoyl-CoA

C4937

3'-dephospho-CoA

C5234

4-chloro-3-hydroxybutyryl-CoA

C5232

4-chloro-crotonyl-CoA

C5236

chloroethylmalonyl-CoA

C5315

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

C5285

(E)-2-methylcrotonoyl-CoA

C5313

2-methylbutanoyl-CoA

C5635

oleoyl-CoA

C1177

propanoyl-CoA

C1175

butanoyl-CoA

C10774

(3R)-3-hydroxybutanoyl-CoA

C2009

3-oxopentanoyl-CoA

C2008

acetoacetyl-CoA

C7343

(S)-malyl-CoA

C1337

crotonyl-CoA

C11485

D-gluconate

C11487

D-mannonate

C10688

maltotriose

C10693

sucrose

C6823

α,α-trehalose

C10689

maltotetraose

C10691

maltohexaose

C10692

maltoheptaose

C10690

maltopentaose

C2012

keto-D-fructose

C2065

aldehydo-D-ribose

C2061

α-D-ribofuranose

C2062

β-D-ribofuranose

C7085

β-D-glucopyranose

C7087

α-D-glucopyranose

C2109

α-D-galactopyranose

C2858

glycolaldehyde

C11256

5-chloro-5-deoxy-D-ribose

C2143

D-xylulose

C8835

β-D-fructofuranose

C5286

N-acetyl-β-D-glucosamine

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C10338

5-phospho-α-D-ribose 1-diphosphate

C10340

D-erythrose 4-phosphate

C15289

D-sedoheptulose 7-phosphate

C10356

4-phospho-D-erythronate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C2057

α-D-ribose-1-phosphate

C8704

D-xylulose 5-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C10604

D-ribulose 5-phosphate

C8813

α-D-mannose 1-phosphate

C8811

α-D-glucopyranose 1-phosphate

C8815

α-D-galactose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2989

β-D-fructofuranose 6-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C2123

β-D-glucose 6-phosphate

C2125

α-D-glucose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C6719

β-D-mannopyranose 6-phosphate

C5615

D-glyceraldehyde 3-phosphate

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C10379

a peptidoglycan dimer (E. faeciums)

C10372

a peptidoglycan dimer (S. aureus)

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C10374

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

C10381

a peptidoglycan dimer (mycobacteria)

C10370

a peptidoglycan dimer (E. faecium, tetrapeptide)

C10383

a peptidoglycan with L,D cross-links (mycobacteria)

C10364

a peptidoglycan with D,D cross-links (mycobacteria)

C13230

a peptidoglycan dimer (meso-diaminopimelate containing)

C361

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

C3122

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C3131

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3135

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

C3124

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

C3130

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C14587

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

C14591

a peptidoglycan with D,D cross-link (S. aureus)

C14595

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

C6673

sucrose 6F-phosphate

C5684

a thiol group

C6245

(R)-lactaldehyde

C6246

(S)-lactaldehyde

C3483

formaldehyde

C2040

diacetyl

C11517

acetate

C11482

(R)-pantoate

C11510

5-chloro-5-deoxy-D-ribonate

C10572

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

C13298

(3E,5Z)-tetradecadienoate

C6375

di-homo-γ-linolenate

C3418

butanoate

C3308

pyruvate

C3301

2-oxoglutarate

C3351

glyoxylate

C3337

5-chloro-4-hydroxy-2-oxopentanoate

C3257

2-oxobutanoate

C3421

formate

C6186

(S)-lactate

C6185

(R)-lactate

C11476

(R)-glycerate

C8950

chorismate

C6443

fumarate

C2802

(S)-malate

C8919

D-glucarate

C6449

(4S)-4-hydroxy-2-oxoglutarate

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8033

5-amino-4-imidazolecarboxyamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C6218

(+)-7-epi-jasmonate

C11919

ethylene glycol

C2022

(R)-propane-1,2-diol

C2023

(S)-propane-1,2-diol

C6524

2-aminoprop-2-enoate

C6526

(2Z)-2-aminobut-2-enoate

C4734

dimethyl sulfide

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C11023

Fe2+

C4320

H+

C4328

ammonium

C7036

hydrogencarbonate

C7024

thiosulfate

C7022

selenide

C7006

chloride

C6097

phosphate

C6093

diphosphate

C1689

trimethyl sulfonium

C10994

thiamine

C4210

pyridoxal 5'-phosphate

C4214

pyridoxine 5'-phosphate

C5394

(R)-NADHX

C5392

(S)-NADHX

C10614

coenzyme A

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C6644

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

C2017

α-D-glucosamine 6-phosphate

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C6437

3-phospho-D-glyceroyl-phosphate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C8419

sn-glycerol 3-phosphate

C7121

oxygen

C7118

hydrogen sulfide

C7676

protoporphyrin IX

C6624

protoheme

C10799

DNA with lesion