an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
urea
aminoacetone
1-piperideine 6-carboxylate
ammonia
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
bisorganyltrisulfane
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
H2O
7-carboxy-7-deazaguanine
mesaconate
5-enolpyruvoyl-shikimate 3-phosphate
(S)-dihydroorotate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
CO2
orotidine 5'-phosphate
(L-threonylcarbamoyl)adenylate
glycerone phosphate
3-deoxy-α-D-manno-2-octulosonate
(R)-4'-phosphopantothenoyl-L-cysteine
(R)-4'-phosphopantothenate
4'-phosphopantetheine
D-galactosamine-6-phosphate
N-acetyl-D-galactosamine 6-phosphate
5-amino-6-(D-ribitylamino)uracil
1-deoxy-L-glycero-tetrulose 4-phosphate
3-amino-1-hydroxyacetone 1-phosphate
norspermidine
carboxynorspermidine
lipoamide
dihydrolipoamide
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
3-deoxy-D-manno-octulosonate 8-phosphate
phosphoenolpyruvate
nicotinate adenine dinucleotide
β-nicotinate D-ribonucleotide
carbamoyl phosphate
coproporphyrinogen III
4-amino-4-deoxychorismate
2-dehydropantoate
3-methyl-2-oxobutanoate
2-C-methyl-D-erythritol 4-phosphate
4-imidazolone-5-propanoate
urocanate
xanthine
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
isopentenyl diphosphate
prenyl diphosphate
thiamine diphosphate
thiamine phosphate
(S)-2-amino-6-oxohexanoate
4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate
acetyl phosphate
4-methyl-2-oxopentanoate
(S)-3-methyl-2-oxopentanoate
3-dehydroquinate
3-deoxy-D-arabino-heptulosonate 7-phosphate
adenosine 5'-phosphoselenate
adenosine 5'-phosphosulfate
3'-phosphoadenylyl-sulfate
1,4-dihydroxy-2-naphthoate
DNA without lesion
shikimate 3-phosphate
shikimate
N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
butanoyl phosphate
oxaloacetate
3-dehydroshikimate
lipid A disaccharide (E. coli)
lipid X
1,4-dihydroxy-2-naphthoyl-CoA
4-(2'-carboxyphenyl)-4-oxobutyryl-CoA
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
4-aminobutanoate
(R)-pantothenate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
4-phosphooxy-L-threonine
3-phosphooxypyruvate
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
(S)-2,3,4,5-tetrahydrodipicolinate
(S)-2-aceto-2-hydroxybutanoate
(R)-2,3-dihydroxy-3-methylpentanoate
hydrogen peroxide
5-amino-6-(5-phospho-D-ribosylamino)uracil
5-amino-6-(5-phospho-D-ribitylamino)uracil
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
lipid IVA
glutathione disulfide
hydrogen selenide
glutathioselenol
selenodiglutathione
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
formamide
L-arginino-succinate
autoinducer 2
S-ribosyl-L-homocysteine
L-homocysteine
5,10-methenyltetrahydrofolate mono-L-glutamate
(S)-citramalate
α-D-glucosamine 6-phosphate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
oxygen
hydrogen sulfide
protoporphyrinogen IX
Mg-protoporphyrin
protoporphyrin IX
uroporphyrinogen-III
protoheme
adenosylcobalamin
cob(I)alamin
adenosylcobinamide
cob(I)inamide
adenosyl-cob(III)yrinate a,c-diamide
cob(I)yrinate a,c-diamide
DNA with lesion
D-alanyl-D-alanine
L-α-amino-ε-keto-pimelate
L-serine
glycine
L-glutamine
L-leucine
L-alanine
L-lysine
L-histidine
L-arginine
L-glutamate
D-glutamate
β-alanine
L-citrulline
L-valine
L-isoleucine
L-aspartate
L-threonine
L-asparagine
L-methionine
L-tyrosine
L-cysteine
L-homoserine
O-succinyl-L-homoserine
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
L-aspartate 4-semialdehyde
L-ornithine
meso-diaminopimelate
L-cystathionine
L-isoglutamine
L-aspartyl-4-phosphate
formyl-L-isoglutamine
N-formimino-L-glutamate
N-carbamoyl-L-aspartate
L-saccharopine
L-2-amino-3-oxobutanoate
3-phospho-L-serine
(2S, 3S)-3-methylaspartate
D-alanine
ADP
ATP
5'-deoxyadenosine
GDP
GTP
adenylo-succinate
GMP
guanosine 3'-monophosphate
guanosine 2',3'-cyclic monophosphate
adenosine 3'-monophosphate
adenosine 2',3'-cyclic monophosphate
hypoxanthine
IMP
XMP
2'-deoxyguanosine
2'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
2'-deoxyinosine
cyclic-AMP
IDP
ITP
dADP
dATP
dGDP
dGTP
AMP
5'-deoxy-5'-fluoroadenosine
NADH
NADPH
NAD+
NADP+
preQ1
guanine
adenine
cytidine-3'-monophosphate
uridine 3'-monophosphate
cytidine 2',3'-cyclic monophosphate
uridine 2'3'-cyclic monophosphate
dCDP
dTDP
dUDP
dTTP
dUTP
dCTP
dCMP
dTMP
dUMP
β-nicotinamide D-ribonucleotide
UMP
CMP
UDP
CDP
CTP
UTP
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramate
UDP-α-D-galactose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-mannosamine
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-glucosamine
GDP-4-dehydro-α-D-rhamnose
GDP-α-D-mannose
dTDP-4-dehydro-β-L-rhamnose
dTDP-β-L-rhamnose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
CMP-3-deoxy-β-D-manno-octulosonate
adenosine
guanosine
xanthosine
inosine
2'-deoxyuridine
thymidine
2'-deoxycytidine
cytidine
uridine
orotate
6-carboxy-5,6,7,8-tetrahydropterin
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydroneopterin 2',3'-cyclic phosphate
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydromonapterin
7,8-dihydroneopterin
7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydroneopterin 3'-phosphate
7,8-dihydropteroate
7,8-dihydrofolate monoglutamate
5,6,7,8-tetrahydrofolate
tetrahydropteroyl tri-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
6,7-dimethyl-8-(1-D-ribityl)lumazine
riboflavin
FAD
FMN
2-iminopropanoate
urate
2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
menaquinol-8
demethylmenaquinol-8
4-aminobenzoate
trans,octacis-decaprenyl phosphate
(2E,6E)-farnesyl diphosphate
mono-trans,octa-cis-decaprenyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
all-trans-octaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
succinyl-CoA
3'-dephospho-CoA
acetyl-CoA
propanoyl-CoA
sucrose
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
α-D-galactopyranose
β-D-galactopyranose
D-glyceraldehyde
glycolaldehyde
β-D-fructofuranose
N-acetyl-α-D-mannosamine
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
5-phospho-α-D-ribose 1-diphosphate
D-erythrose 4-phosphate
4-phospho-D-erythronate
α-D-ribose-1-phosphate
5-fluoro-5-deoxy-D-ribose 1-phosphate
2-deoxy-α-D-ribose 1-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
aldehydo-D-arabinose 5-phosphate
α-D-glucopyranose 1-phosphate
α-D-galactose 1-phosphate
α-D-mannose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
D-fructose 6-phosphate
β-D-fructose 1,6-bisphosphate
β-D-fructofuranose 6-phosphate
β-D-glucose 6-phosphate
α-D-glucose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-mannopyranose 6-phosphate
D-glyceraldehyde 3-phosphate
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer (mycobacteria)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
acetaldehyde
2-oxoglutarate
pyruvate
2-oxobutanoate
acetate
formate
propanoate
butanoate
chorismate
succinate
fumarate
(S)-malate
(R)-pantoate
nicotinamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
agmatine
2-aminoprop-2-enoate
glutathione
S-sulfanylglutathione
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
Cd2+
Mg2+
Fe2+
ammonium
H+
hydrogencarbonate
selenate
selenite
sulfate
phosphate
diphosphate
triphosphate
nicotinate
pyridoxine 5'-phosphate
pyridoxal 5'-phosphate
(R)-NADHX
(S)-NADHX
coenzyme A
preQ0