an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
H2O
L-arginino-succinate
canavaninosuccinate
O-ureido-L-homoserine
(R)-4'-phosphopantothenoyl-L-cysteine
(R)-4'-phosphopantothenate
CO2
4'-phosphopantetheine
N-succinyl-L,L-2,6-diaminopimelate
N-acetylglutamyl-phosphate
N-succinyl-2-amino-6-ketopimelate
(S)-2,3,4,5-tetrahydrodipicolinate
5-enolpyruvoyl-shikimate 3-phosphate
shikimate 3-phosphate
phosphoenolpyruvate
carbamoyl phosphate
N-acetyl-L-glutamate 5-semialdehyde
citrate
3-dehydroshikimate
3-dehydroquinate
(R)-pantothenate
3-deoxy-α-D-manno-2-octulosonate
lipid IVA
lipid A disaccharide (E. coli)
glycerone phosphate
creatinine
4-hydroxy-2-nonenal
orotidine 5'-phosphate
oxaloacetate
(S)-2-acetolactate
(S)-2-aceto-2-hydroxybutanoate
(R)-2,3-dihydroxy-3-methylpentanoate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
4-methylsalicylate
5-methylsalicylate
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
α-ribazole 5'-phosphate
β-nicotinate D-ribonucleotide
5,6-dimethylbenzimidazole
(S)-dihydroorotate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
N1-(5-phospho-β-D-ribosyl)glycinamide
(S)-3-methyl-2-oxopentanoate
4-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
5-amino-6-(D-ribitylamino)uracil
5-amino-6-(5-phospho-D-ribosylamino)uracil
5-amino-6-(5-phospho-D-ribitylamino)uracil
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
nicotinate adenine dinucleotide
3-deoxy-D-arabino-heptulosonate 7-phosphate
glutathione disulfide
lipid X
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
2-C-methyl-D-erythritol 4-phosphate
S-acetyldihydrolipoamide
dihydrolipoamide
thiamine diphosphate
2-(α-hydroxyethyl)thiamine diphosphate
3-deoxy-D-manno-octulosonate 8-phosphate
3-amino-1-hydroxyacetone 1-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
4-phosphooxy-L-threonine
5-phospho-β-D-ribosylamine
2-dehydropantoate
thiamine phosphate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
hydrogen peroxide
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
isopentenyl diphosphate
prenyl diphosphate
3-demethylubiquinol-6
γ-L-glutamyl 5-phosphate
3-phosphooxypyruvate
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
α-D-glucosamine 1-phosphate
hydrogenobyrinate a,c-diamide
carbonic acid
L-canavanine
shikimate
coproporphyrinogen III
DNA without lesion
anthranilate
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
isochorismate
1-deoxy-L-glycero-tetrulose 4-phosphate
2-iminoacetate
(L-threonylcarbamoyl)adenylate
ethanolamine
dimethylsulfoniopropanoate
4-acetamidobutanoate
4-acetamidobutanal
D-glucurono-6,3-lactone
propynoate
prop-2-ynal
3,4-dihydroxyphenylacetaldehyde
3-methoxy-4-hydroxyphenylglycolaldehyde
5-hydroxyindole acetate
5-hydroxyindole acetaldehyde
4-imidazoleacetate
imidazole acetaldehyde
norspermidine
carboxynorspermidine
oxalosuccinate
N-acetyl-D-muramate 6-phosphate
1,6-anhydro-N-acetyl-β-muramate
carbon monoxide
urea
N5-carboxyaminoimidazole ribonucleotide
hydrogenobyrinate
quinolinate
4-amino-2-methyl-5-pyrimidinemethanol
2-maleylacetate
protoanemonin
(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate
ammonia
enol-phenylpyruvate
hydrogencarbonate
superoxide
chloride
phosphate
diphosphate
ammonium
H+
Co2+
Fe2+
trimethyl sulfonium
3-dimethylsulfoniopropionaldehyde
dimethyl sulfide
S-(hydroxymethyl)glutathione
glutathione
3-sulfopyruvate
L-cysteate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
4-methyl-5-(2-phosphooxyethyl)thiazole
5-(2-hydroxyethyl)-4-methylthiazole
2,4-dinitrophenyl-S-glutathione
1-chloro-2,4-dinitrobenzene
2-methoxy-6-(all-trans-octaprenyl)phenol
5,10-methenyltetrahydrofolate mono-L-glutamate
1-oleoyl-2-lyso-glycerone phosphate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
(2R)-2,3-dihydroxy-3-methylbutanoate
3-phospho-D-glyceroyl-phosphate
2,3-diphospho-D-glycerate
2-phospho-D-glycerate
3-phospho-D-glycerate
sn-glycerol 3-phosphate
oxygen
protoporphyrinogen IX
uroporphyrinogen-III
protoporphyrin IX
hemin
protoheme
cob(II)yrinate a,c-diamide
DNA with lesion
(glutathion-S-yl)-4-hydroxy-2-nonenal
4-methylphenol
L-homocysteine
γ-L-glutamyl-L-cysteine
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
2-iminosuccinate
2-iminobutanoate
L-α-amino-ε-keto-pimelate
L-lysine
L-arginine
L-glutamate
D-glutamate
glycine
L-alanine
L-proline
L-glutamine
L-leucine
L-serine
creatine
β-alanine
L-phenylalanine
L-isoleucine
L-valine
L-methionine
L-cysteine
L-aspartate
L,L-diaminopimelate
L-ornithine
L-aspartyl-4-phosphate
L-asparagine
L-tyrosine
L-threonine
N-carbamoyl-L-aspartate
N-acetyl-L-ornithine
N-acetyl-L-citrulline
L-citrulline
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
L-aspartate 4-semialdehyde
L-glutamate-5-semialdehyde
L-homoserine
meso-diaminopimelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
L-saccharopine
3-phospho-L-serine
N-acetyl-L-glutamate
N-acetyl-L-methionine
sarcosine
D-alanine
D-methionine
AMP
ATP
ADP
adenylo-succinate
GDP
GTP
dATP
dADP
dGTP
dGDP
ITP
IDP
dITP
dIDP
GMP
ppGpp
pppGpp
XMP
IMP
5'-deoxyadenosine
2'-deoxyguanosine
2'-deoxyadenosine
dGMP
dAMP
NADP+
NAD+
NADPH
NADH
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramate
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-α-D-glucose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
CMP-3-deoxy-β-D-manno-octulosonate
preQ1
dCMP
dTMP
dUMP
dCDP
dTDP
dUDP
dUTP
dCTP
dTTP
CDP
UDP
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
β-nicotinamide D-ribonucleotide
CTP
UTP
CMP
UMP
sucrose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
5-phospho-α-D-ribose 1-diphosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
4-phospho-D-erythronate
α-D-glucopyranose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 6-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-ribulose 5-phosphate
aldehydo-D-arabinose 5-phosphate
D-glyceraldehyde 3-phosphate
sucrose 6F-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (mycobacteria)
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
a peptidoglycan with D,D cross-link (S. aureus)
glycerol
β-D-fructofuranose
D-glyceraldehyde
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetyl-β-D-glucosamine
salicylaldehyde
(2E,6E)-farnesyl diphosphate
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
3-decaprenyl-4-hydroxybenzoate
3-heptaprenyl-4-hydroxybenzoate
3-hexaprenyl-4-hydroxybenzoate
3-octaprenyl-4-hydroxybenzoate
3-nonaprenyl-4-hydroxybenzoate
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
all-trans-decaprenyl diphosphate
all-trans-heptaprenyl diphosphate
all-trans-hexaprenyl diphosphate
all-trans-octaprenyl diphosphate
all-trans-nonaprenyl diphosphate
dioleoyl phosphatidate
1-oleoyl-sn-glycerol 3-phosphate
1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate
myo-inositol
1D-myo-inositol 1-monophosphate
1D-myo-inositol 3-monophosphate
4-methylcatechol
4-chlorocatechol
catechol
3,4-dihydroxyphenylacetate
3,4-dihydroxymandelate
3,4-dihydroxyphenylglycolaldehyde
2,3-dihydroxybenzoate
(2E,6E)-farnesal
benzaldehyde
phytenal
acetaldehyde
1-octanal
formaldehyde
diacetyl
menadione
caldariellaquinone
3-oxoadipate
octanoate
(2E,6E)-farnesoate
acetate
formate
pyruvate
(R)-lactate
cis-aconitate
D-threo-isocitrate
chorismate
D-glucarate
succinate
fumarate
(S)-malate
2-oxoglutarate
glyoxylate
2-oxobutanoate
3-phenyl-2-oxopropanoate
salicylate
4-aminobenzoate
benzoate
(R)-pantoate
orotate
(S)-1-pyrroline-5-carboxylate
phytenate
4-hydroxybenzoate
menadiol
2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol
caldariellaquinol
3-demethylubiquinol-9
3-demethylubiquinol-8
3-demethylubiquinol-7
3-demethylubiquinol-10
demethylmenaquinol-8
menaquinol-8
ubiquinol-9
ubiquinol-8
ubiquinol-6
ubiquinol-7
ubiquinol-10
(indol-3-yl)acetaldehyde
vanillyl mandelate
4-chlorosalicylate
5-chlorosalicylate
preQ0
7,8-dihydroneopterin 3'-triphosphate
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydropteroate
5,6,7,8-tetrahydrofolate
5-methyltetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
7,8-dihydrofolate monoglutamate
FMN
riboflavin
FAD
FMNH2
reduced riboflavin
6,7-dimethyl-8-(1-D-ribityl)lumazine
precorrin-3A
precorrin-3B
precorrin-4
precorrin-5
precorrin-6A
precorrin-2
precorrin-1
precorrin-6B
precorrin-8x
precorrin-7
nicotinate
biotin
thiamine
nicotinamide
pyridoxal 5'-phosphate
pyridoxamine 5'-phosphate
pyridoxine 5'-phosphate
pyridoxamine
pyridoxal
pyridoxine
coenzyme A
(R)-NADHX
(S)-NADHX
malonyl-CoA
acetyl-CoA
succinyl-CoA
3'-dephospho-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
oleoyl-CoA
acetoacetyl-CoA
hexadecanedioyl-CoA
octanoyl-CoA
(S)-3-hydroxybutanoyl-CoA
(indol-3-yl)acetate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
3-chloro-cis,cis-muconate
sn-glycero-3-phosphoethanolamine
glycerophosphoserine
glycerophosphoglycerol
(2Z)-2-aminobut-2-enoate