an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
urea
acetyl phosphate
H2O
thiamine phosphate
3-dehydroshikimate
shikimate
(2S)-2-isopropylmalate
3-methyl-2-oxobutanoate
methylsalicylate
salicyl alcohol
preuroporphyrinogen
porphobilinogen
5-oxo-L-proline
isopentenyl diphosphate
nicotinate adenine dinucleotide
DNA without lesion
oxaloacetate
shikimate 3-phosphate
3-dehydroquinate
3-deoxy-D-arabino-heptulosonate 7-phosphate
ethanolamine
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
CO2
coproporphyrinogen III
adenosine 5'-phosphosulfate
3-deoxy-α-D-manno-2-octulosonate
3-deoxy-D-manno-octulosonate 8-phosphate
acetoacetate
4-fumaryl-acetoacetate
phosphoenolpyruvate
anthranilate
N-(5-phosphoribosyl)-anthranilate
7,8-diaminopelargonate
(S)-2-amino-6-oxohexanoate
8-amino-7-oxononanoate
S-adenosyl-4-methylsulfanyl-2-oxobutanoate
5-aminolevulinate
(S)-4-amino-5-oxopentanoate
4-amino-4-deoxychorismate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
estrone 3-sulfate
3-β-hydroxyandrost-5-en-17-one 3-sulfate
glutathione disulfide
hydrogen peroxide
2-C-methyl-D-erythritol 4-phosphate
(lipoyl)adenylate
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
5-amino-6-(D-ribitylamino)uracil
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
1-deoxy-L-glycero-tetrulose 4-phosphate
carbamoyl phosphate
(S)-dihydroorotate
prephenate
orotidine 5'-phosphate
lipid IVA
arsenite
thiamine diphosphate
2-(α-hydroxyethyl)thiamine diphosphate
quinolinate
glycerone phosphate
β-nicotinate D-ribonucleotide
aminoacetone
4-pyridoxolactone
1-piperideine 6-carboxylate
cyclic-2,3-O-oxalyl-L-threonate
dehydroascorbate (bicyclic form)
ammonia
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
enol-phenylpyruvate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
carbonic acid
4'-phosphopantetheine
cyclic- 3,4-O-oxalyl-L-threonate
2,3-dioxo-L-gulonate
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
2-carboxy-L-xylonolactone
2-carboxy-L-threo-pentonate
4-phosphooxy-L-threonine
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
3-phosphooxypyruvate
4-acetamidobutanoate
4-acetamidobutanal
N2-succinylglutamate
N2-succinyl-L-glutamate 5-semialdehyde
phosphonoacetate
glycolate
itaconate
2-phosphoglycolate
S-methyl-5'-thioadenosine
S-adenosyl 3-(methylsulfanyl)propylamine
S-ribosyl-L-homocysteine
5-deoxy-α-ribose 1-phosphate
S-methyl-5-thio-α-D-ribose 1-phosphate
5-(methylsulfanyl)-α-D-ribose
4-aminobutanoate
lipid A disaccharide (E. coli)
citrate
(L-threonylcarbamoyl)adenylate
succinate semialdehyde
oxalosuccinate
lipid X
autoinducer 2
5-enolpyruvoyl-shikimate 3-phosphate
N2-succinyl-L-arginine
N2-succinyl-L-ornithine
3-amino-1-hydroxyacetone 1-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
homogentisate
(S)-3-methyl-2-oxopentanoate
(R)-2,3-dihydroxy-3-methylpentanoate
5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate
3-hydroxy-2-methylpyridine-4,5-dicarboxylate
3-hydroxy-2-methylpyridine-5-carboxylate
(2Z)-2-(acetamidomethylene)succinate
2-amino-3-carboxymuconate-6-semialdehyde
L-arginino-succinate
5-amino-6-(5-phospho-D-ribosylamino)uracil
5-amino-6-(5-phospho-D-ribitylamino)uracil
dethiobiotin
4-maleyl-acetoacetate
3'-phosphoadenylyl-sulfate
3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate
7-epicholate
4-methyl-2-oxopentanoate
(2S)-2-isopropyl-3-oxosuccinate
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
α-D-galacturonate 1-phosphate
L-gulono-1,4-lactone
L-xylo-hex-3-ulono-1,4-lactone
L-dehydro-ascorbate
cyanophycin primer
cyanophycin primer-L-aspartate
L-cysteinylglycine
N-acetyl-L-glutaminyl-L-glutamine amide
N-acetyl-L-glutaminyl-L-glutamine
D-alanyl-D-alanine
γ-L-glutamyl-L-cysteine
2-iminosuccinate
2-iminobutanoate
2-iminopropanoate
L-alanine
glycine
L-phenylalanine
L-leucine
L-proline
L-tryptophan
L-selenocysteine
L-methionine
L-isoleucine
L-cysteine
L-lysine
L-glutamate
L-glutamine
L-aspartate
L-serine
L-asparagine
L-threonine
L-aspartyl-4-phosphate
L-cystathionine
L-arginine
L-tyrosine
L-ornithine
N-carbamoyl-L-aspartate
L-citrulline
S-adenosyl-L-methionine
S-adenosyl-L-homocysteine
L-glutamate-5-semialdehyde
L-aspartate 4-semialdehyde
L-homocysteine
meso-diaminopimelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
L-2-amino-3-oxobutanoate
3-phospho-L-serine
D-alanine
D-glutamate
AMP
ATP
ADP
GDP
adenylo-succinate
IMP
GTP
GMP
hypoxanthine
5'-deoxyadenosine
XMP
8-oxo-dGMP
8-oxo-dGTP
ppGpp
pppGpp
isoguanine
dGDP
dADP
IDP
ITP
dITP
dIDP
dGTP
dATP
2'-deoxyguanosine
2'-deoxyadenosine
dGMP
dAMP
8-oxo-GMP
8-oxo-GTP
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
ADP-α-D-glucose
GDP-α-D-mannuronate
GDP-α-D-mannose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
dTDP-α-D-glucose
dTDP-4-dehydro-β-L-rhamnose
dTDP-β-L-rhamnose
dTDP-4-acetamido-4,6-dideoxy-α-D-galactose
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramate
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
UDP-α-D-galactose
UDP-α-D-glucose
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-α-D-galacturonate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
CMP-3-deoxy-β-D-manno-octulosonate
guanine
adenine
uracil
thymine
dUMP
dTMP
dCMP
dCDP
dUDP
dTDP
dUTP
dCTP
dTTP
UDP
CDP
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
β-nicotinamide D-ribonucleotide
CTP
UTP
CMP
UMP
5-hydroxy-CTP
2-hydroxy-dATP
NADP+
NAD+
NADPH
NADH
2'-deoxyuridine
thymidine
2'-deoxycytidine
guanosine
cytidine
uridine
aldehydo-L-galactonate
L-gulonate
1-(β-D ribofuranosyl)nicotinamide
D-galactosylononitol
galactinol
5-phospho-α-D-ribose 1-diphosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
4-phospho-D-erythronate
α-D-glucopyranose 1-phosphate
α-D-galactose 1-phosphate
α-D-mannose 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 6-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-glucose 6-phosphate
α-D-glucose 6-phosphate
α-D-mannopyranose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
aldehydo-D-arabinose 5-phosphate
D-glyceraldehyde 3-phosphate
sucrose 6F-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (S. aureus)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
a peptidoglycan with D,D cross-link (S. aureus)
β-D-fructofuranose
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
α-D-galactopyranose
β-D-glucopyranose
α-D-glucopyranose
D-glyceraldehyde
glycerol
maltotriose
α-Kdo-(2→6)-lipid IVA
α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA
sucrose
maltopentaose
maltohexaose
maltotetraose
maltoheptaose
aldehydo-D-galacturonate
salicylaldehyde
all-trans-retinol
all-trans-retinyl palmitate
(2E,6E)-farnesyl diphosphate
geranyl diphosphate
apo-4'-lycopenal
apo-4'-lycopenoate
betanidin quinone
betanidin
3-octaprenyl-4-hydroxybenzoate
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
all-trans-octaprenyl diphosphate
dioleoyl phosphatidate
1-oleoyl-2-lyso-glycerone phosphate
1-oleoyl-sn-glycerol 3-phosphate
myo-inositol
1D-myo-inositol 2-monophosphate
1D-myo-inositol 1-monophosphate
1D-myo-inositol 6-monophosphate
1D-myo-inositol 5-monophosphate
1D-myo-inositol 4-monophosphate
1D-myo-inositol 3-monophosphate
D-ononitol
catechol
ethanol
methanol
methylglyoxal
benzaldehyde
(S)-lactaldehyde
formaldehyde
acetaldehyde
1-octanal
menadione
diacetyl
pyruvate
2-oxoglutarate
2-oxobutanoate
glyoxylate
3-phenyl-2-oxopropanoate
3-(4-hydroxyphenyl)pyruvate
salicylate
4-aminobenzoate
benzoate
acetate
orotate
(S)-1-pyrroline-5-carboxylate
aldehydo-D-glucuronate
palmitate
octanoate
linoleate
oleate
γ-linolenate
formate
(S)-lactate
(R)-lactate
cis-aconitate
D-threo-isocitrate
chorismate
fumarate
succinate
(S)-malate
6-hydroxy-2-cyclohexen-one-carboxylate
salicyl-6-hydroxy-2-cyclohexene-on-oyl
4-hydroxybenzoate
6,7-dehydrobaicalein
baicalein
2-[hydroperoxy(4-hydroxyphenyl)methyl]-6-hydroxy-1-benzofuran-3-one
6-hydroxy-2-[hydroxy-(4-hydroxyphenyl)methyl]-1-benzofuran-3-one
6-hydroxy-2-(6-oxo-1-oxaspiro[2.5]octa-4,7-dien-2-yl)-1-benzofuran-3-one
phenol
menadiol
2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol
6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol
3-demethylubiquinol-8
ubiquinol-8
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
7,8-dihydroneopterin 3'-triphosphate
5,6,7,8-tetrahydrofolate
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
7,8-dihydrofolate monoglutamate
N10-formyldihydrofolate
riboflavin
FAD
FMN
6,7-dimethyl-8-(1-D-ribityl)lumazine
thiamine
L-ascorbate
pyridoxal 5'-phosphate
pyridoxal
pyridoxamine 5'-phosphate
pyridoxamine
pyridoxine 5'-phosphate
pyridoxine
4-pyridoxate
coenzyme A
(R)-lipoate
(R)-NADHX
(S)-NADHX
L-galactono-1,4-lactone
acetyl-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
malonyl-CoA
3'-dephospho-CoA
itaconyl-CoA
succinyl-CoA
oleoyl-CoA
estrone
(indol-3-yl)acetate
methyl (indol-3-yl)acetate
3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate
3α,7α,12β-trihydroxy-5β-cholan-24-oate
3-β-hydroxyandrost-5-en-17-one
cholate
glycocholate
isocholate
3-dehydrocholate
2-chloroacetate
sn-glycero-3-phosphoethanolamine
glycerophosphoserine
glycerophosphoglycerol
spermidine
putrescine
cadaverine
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
OH-
hydrogencarbonate
selenide
superoxide
sulfate
chloride
phosphate
diphosphate
Fe3+
H+
ammonium
Fe2+
S-(hydroxymethyl)glutathione
glutathione
(R)-S-lactoylglutathione
3-sulfopyruvate
L-cysteate
monodehydroascorbate radical
hydroxyl radical
2-methoxy-6-(all-trans-octaprenyl)phenol
2-octaprenylphenol
3-(all-trans-octaprenyl)benzene-1,2-diol
5,10-methenyltetrahydrofolate mono-L-glutamate
dTDP-4-amino-4,6-dideoxy-α-D-galactose
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
sn-glycerol 3-phosphate
oxygen
protoporphyrin IX
protoporphyrinogen IX
uroporphyrinogen-III
coproporphyrinogen I
uroporphyrinogen-I
protoheme
DNA with lesion
(glutathion-S-yl)-4-hydroxy-2-nonenal