an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

2-dehydro-3-deoxy-D-galactonate 6-phosphate

2,5-dioxopentanoate

(4-hydroxyphenyl)acetate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

quinolinate

β-nicotinate D-ribonucleotide

CO₂

H₂O

phosphoenolpyruvate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

3-phosphooxypyruvate

shikimate 3-phosphate

shikimate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

5-enolpyruvoyl-shikimate 3-phosphate

prephenate

glycerone phosphate

O-ureido-L-homoserine

carbamoyl phosphate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

L-canavanine

canavaninosuccinate

L-arginino-succinate

coproporphyrinogen III

formate

acetyl phosphate

histidinol

L-histidinol phosphate

(indol-3-yl)pyruvate

propanoyl phosphate

3-dehydroshikimate

D-erythro-imidazole-glycerol-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

γ-L-glutamyl 5-phosphate

DNA without lesion

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

isopentenyl diphosphate

prenyl diphosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

orotidine 5'-phosphate

hydroxypyruvate

α-D-glucosamine 1-phosphate

imidazole acetol-phosphate

histidinal

2-C-methyl-D-erythritol 4-phosphate

citrate

oxalosuccinate

1-piperideine 6-carboxylate

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

(2R,3S)-3-isopropylmalate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-oleoylglycerol

oxaloacetate

carboxyphosphate

β-D-ribosylnicotinate

S-ribosyl-L-homocysteine

5-(methylsulfanyl)-α-D-ribose

S-methyl-5'-thioadenosine

(S)-4-hydroxy-2-oxopentanoate

5-oxo-L-proline

4'-phosphopantetheine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N⁵-carboxyaminoimidazole ribonucleotide

autoinducer 2

O-acetyl-L-serine

N-acetylmuramoyl-L-ala-D-glu

N-acetylmuramoyl-L-ala-D-glu-(L)-meso-diaminopimelate -(L)-D-ala

nicotinate adenine dinucleotide

(2S)-2-isopropylmalate

(R)-2,3-dihydroxy-3-methylpentanoate

anthranilate

N-(5-phosphoribosyl)-anthranilate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

(S)-2,3-dihydrodipicolinate

5-dehydro-4-deoxy-D-glucarate

norspermidine

carboxynorspermidine

(S)-2-amino-6-oxohexanoate

urea

S-adenosyl 3-(methylsulfanyl)propylamine

2,5-didehydro-D-gluconate

2-keto-D-gluconate

dihydroxyacetone

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

glycolate

hexulose 6-phosphate

2-dehydro-3-deoxy-D-galactonate

2-dehydro-3-deoxy-D-gluconate

xanthine

(S)-dihydroorotate

3-phosphonopyruvate

2-isopropylmaleate

hydrogen peroxide

α-D-galactopyranose

β-D-galactopyranose

α-D-lyxopyranose

D-glyceraldehyde

α-L-rhamnopyranose

β-L-rhamnopyranose

α-D-ribofuranose

methylglyoxal

(S)-lactaldehyde

acetaldehyde

butan-1-al

formaldehyde

diacetyl

meso-diaminopimeloyl-alanine

D-alanyl-D-alanine

4-hydroxybenzoate

urate

2,3-dihydroxybenzoate

(+)-taxifolin

(2R,3S,4S)-leucocyanidin

(2R,3S,4S)-leucopelargonidin

(+)-dihydrokaempferol

4-methylphenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

L-2-aminoadipate

carbamate

L-citrulline

glycine

L-tryptophan

L-serine

L-threonine

L-proline

L-glutamate

L-arginine

L-aspartate

L-phenylalanine

L-tyrosine

L-leucine

L-glutamine

L-asparagine

L-alanine

L-histidine

L-valine

L-isoleucine

L-lysine

L-cysteine

L-methionine

L-homocysteine

L-canaline

L-ornithine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

S-adenosyl-L-homocysteine

O-phospho-L-homoserine

L-homoserine

O-succinyl-L-homoserine

L-glutamate-5-semialdehyde

meso-diaminopimelate

L-aspartyl-4-phosphate

L-saccharopine

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-cystathionine

D-glutamate

D-alanine

acetate

orotate

5-chloro-5-deoxy-D-ribonate

(S)-1-pyrroline-5-carboxylate

oleate

(R)-lactate

(R)-glycerate

pyruvate

2-oxobutanoate

2-oxoglutarate

4-(methylsulfanyl)-2-oxobutanoate

5-chloro-4-hydroxy-2-oxopentanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

cis-aconitate

D-threo-isocitrate

chorismate

D-galactarate

fumarate

succinate

(S)-malate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

6-aminopenicillanate

isopenicillin N

penicillin G

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

(2E,6E)-farnesyl diphosphate

geranyl diphosphate

1-oleoyl-sn-glycerol

D-galactonate

1-(β-D ribofuranosyl)nicotinamide

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

dTDP-β-L-rhamnose

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

L-rhamnulose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-galactose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

D-tagatofuranose 1,6-bisphosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

L-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

β-D-fructofuranose

keto-D-fructose

keto-L-rhamnulose

D-xylulose

glycerol

D-sorbitol 6-phosphate

sucrose

maltopentaose

maltohexaose

maltotriose

maltotetraose

maltoheptaose

stachyose

raffinose

butan-1-ol

adenine

guanine

AMP

IMP

GMP

XMP

ATP

GTP

ITP

ADP

GDP

dGDP

dADP

dGTP

dATP

dAMP

dGMP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

reduced riboflavin

FMNH₂

riboflavin

FMN

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

uracil

thymine

preQ₁

UDP

CDP

dCDP

dUDP

dTTP

CTP

UTP

dUMP

dUTP

dCMP

dCTP

dTMP

5,6-dihydrouracil

5,6-dihydrothymine

dTDP

dipicolinate

UMP

CMP

2'-deoxyuridine

2'-deoxycytidine

thymidine

uridine

cytidine

coenzyme A

5'-chloro-5'-deoxyadenosine

5'-deoxyadenosine

adenylo-succinate

pppGpp

5-chloro-5-deoxyribose 1-phosphate

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

cyclic-AMP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

5-hydroxy-CTP

5-hydroxy-CMP

cyclic di-3',5'-guanylate

NADP⁺

NAD⁺

NADPH

NADH

5'-deoxy-5'-fluoroadenosine

(S)-NADHX

(R)-NADHX

thiamine

nicotinate

pyridoxamine 5'-phosphate

pyridoxamine

pyridoxine 5'-phosphate

pyridoxine

pyridoxal 5'-phosphate

pyridoxal

phenylacetate

isobutanoyl-CoA

malonyl-CoA

acetyl-CoA

3'-dephospho-CoA

(E)-glutaconyl-CoA

phenylacetyl-CoA

succinyl-CoA

(R)-2-hydroxyglutaryl-CoA

4-hydroxybenzoyl-CoA

propanoyl-CoA

crotonyl-CoA

3-sulfopyruvate

L-cysteate

methanethiol

agmatine

putrescine

spermidine

2-iminopropanoate

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

nitrate

hydrogencarbonate

chloride

phosphate

diphosphate

triphosphate

Fe²⁺

Zn²⁺

Co²⁺

Mg²⁺

K⁺

H⁺

ammonium

2-chloroacetate

preQ₀

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

hydrogen sulfide

oxygen

uroporphyrinogen-III

Mg-protoporphyrin

protoporphyrinogen IX

protoporphyrin IX

protoheme

DNA with lesion

sn-glycerol 3-phosphate

2-iminosuccinate

2-iminobutanoate

α-D-glucosamine 6-phosphate