an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
H2O
glycerone phosphate
phosphoenolpyruvate
nicotinate adenine dinucleotide
(R)-4'-phosphopantothenate
(R)-pantothenate
CO2
3-deoxy-α-D-manno-2-octulosonate
3-deoxy-D-manno-octulosonate 8-phosphate
propanoyl phosphate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
glycolate
(S)-dihydroorotate
hydrogen peroxide
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate
quinolinate
β-nicotinate D-ribonucleotide
L-β-lysine
acetoacetate
N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
formate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
N5-carboxyaminoimidazole ribonucleotide
orotidine 5'-phosphate
carboxyphosphate
carbamoyl phosphate
DNA without lesion
4-amino-4-deoxychorismate
2-phosphoglycolate
lipid IVA
1,4-dihydroxy-2-naphthoate
1-deoxy-L-glycero-tetrulose 4-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
3-amino-1-hydroxyacetone 1-phosphate
4-phosphooxy-L-threonine
coproporphyrinogen III
lipid A disaccharide (E. coli)
lipid X
FK-506
31-O-desmethylFK-506
(4Z)-2-oxohept-4-enedioate
(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
3-methyl-2-oxobutanoate
3-phosphooxypyruvate
4-oxoglutaramate
1-piperideine 6-carboxylate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
aminoacetone
1,2-dihydro-β-NADP
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
enol-phenylpyruvate
ammonia
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
bisorganyltrisulfane
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
2-C-methyl-D-erythritol 4-phosphate
β-D-ribosylnicotinate
N-ethylammeline
deethylsimazine
acetyl phosphate
butanoyl phosphate
7-carboxy-7-deazaguanine
5-enolpyruvoyl-shikimate 3-phosphate
shikimate 3-phosphate
4'-phosphopantetheine
(indol-3 yl)acetyl-CoA
(indol-3-yl)pyruvate
N-succinyl-2-amino-6-ketopimelate
(S)-2,3,4,5-tetrahydrodipicolinate
(R)-4'-phosphopantothenoyl-L-cysteine
thiamine diphosphate
thiamine phosphate
5-amino-6-(D-ribitylamino)uracil
8-amino-7-oxononanoate
pimeloyl-CoA
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
isopentenyl diphosphate
prenyl diphosphate
5-methylcytosine
4-methyl-2-oxopentanoate
(S)-3-methyl-2-oxopentanoate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
2-iminoacetate
3-dehydroshikimate
shikimate
4-imidazolone-5-propanoate
urocanate
norspermidine
carboxynorspermidine
(S)-2-amino-6-oxohexanoate
oxaloacetate
4-aminobutanoate
prephenate
2-dehydropantoate
chloramphenicol
xanthine
glutathione disulfide
3-dehydroquinate
formamide
(S)-2-aceto-2-hydroxybutanoate
(R)-2,3-dihydroxy-3-methylpentanoate
N-succinyl-L,L-2,6-diaminopimelate
autoinducer 2
S-ribosyl-L-homocysteine
2-amino-3-carboxymuconate-6-semialdehyde
D-alanyl-D-alanine
carbamate
L-α-amino-ε-keto-pimelate
L-glutamine
L-glutamate
L-isoleucine
L-valine
L-tryptophan
L-alanine
L-aspartate
L-serine
L-lysine
glycine
L-proline
L-leucine
L-threonine
L-tyrosine
L-histidine
L-cysteine
L-methionine
L-homocysteine
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
L-aspartate 4-semialdehyde
L-homoserine
L-glutamate-5-semialdehyde
meso-diaminopimelate
L-aspartyl-4-phosphate
L-2-amino-3-oxobutanoate
L-saccharopine
O-acetyl-L-homoserine
trans-4-hydroxy-L-proline
formyl-L-isoglutamine
N-formimino-L-glutamate
N-carbamoyl-L-aspartate
3-phospho-L-serine
L,L-diaminopimelate
L-isoglutamine
D-alanine
D-glutamate
β-alanine
(R)-β-lysine
protocatechuate
4-aminobenzoate
(R)-pantoate
orotate
acetate
(S)-1-pyrroline-5-carboxylate
pristanate
palmitate
stearate
decanoate
laurate
7-hydroxylaurate
octanoate
butanoate
18-hydroxyoleate
16-hydroxypalmitate
18-hydroxystearate
phytenate
(15Z)-tetracosenoate
oleate
linoleate
α-linolenate
4-hydroxybutanoate
(R)-lactate
propanoate
pyruvate
2-oxoglutarate
glyoxylate
2-oxobutanoate
3-phenyl-2-oxopropanoate
3-oxoadipate
3-carboxy-cis,cis-muconate
chorismate
α,ω-9Z-octadecenedioate
fumarate
succinate
(S)-malate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
α-Kdo-(2→6)-lipid IVA
trans,octacis-decaprenyl phosphate
3-octaprenyl-4-hydroxybenzoate
3-heptaprenyl-4-hydroxybenzoate
3-nonaprenyl-4-hydroxybenzoate
3-decaprenyl-4-hydroxybenzoate
3-hexaprenyl-4-hydroxybenzoate
di-trans,octa-cis-undecaprenyl phosphate
all-trans-octaprenyl diphosphate
all-trans-heptaprenyl diphosphate
all-trans-nonaprenyl diphosphate
all-trans-decaprenyl diphosphate
all-trans-hexaprenyl diphosphate
1-(β-D ribofuranosyl)nicotinamide
1-O-acetyl-α-maltose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
ADP-α-D-glucose
GDP-α-D-mannose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
dTDP-α-D-glucose
dTDP-4-dehydro-β-L-rhamnose
dTDP-β-L-rhamnose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-α-D-galactose
UDP-α-D-glucose
UDP-α-D-galactofuranose
UDP-N-acetyl-α-D-muramate
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-α-D-glucuronate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
CMP-3-deoxy-β-D-manno-octulosonate
5-phospho-α-D-ribose 1-diphosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
α-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 6-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-glucose 6-phosphate
α-D-glucose 6-phosphate
5-fluoro-5-deoxy-D-ribose 1-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
D-arabinofuranose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
L-xylulose 5-phosphate
D-ribulose 5-phosphate
L-ribulose 5-phosphate
D-glyceraldehyde 3-phosphate
sucrose 6G-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
β-D-fructofuranose
α-D-galactopyranose
β-D-galactopyranose
β-D-glucopyranose
α-D-glucopyranose
D-glyceraldehyde
ethanol
methanol
methylglyoxal
acetaldehyde
formaldehyde
caldariellaquinone
4-hydroxybenzoate
urate
caldariellaquinol
3-demethylubiquinol-10
3-demethylubiquinol-8
3-demethylubiquinol-9
3-demethylubiquinol-7
demethylmenaquinol-8
menaquinol-8
ubiquinol-10
ubiquinol-8
ubiquinol-9
ubiquinol-7
4-methylphenol
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
adenine
guanine
AMP
GMP
IMP
XMP
ATP
GTP
ADP
GDP
dADP
dGDP
dATP
dGTP
dGMP
dAMP
hypoxanthine
adenosine
inosine
guanosine
xanthosine
2'-deoxyguanosine
2'-deoxyadenosine
2'-deoxyinosine
6-carboxy-5,6,7,8-tetrahydropterin
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
tetrahydromethanopterin
7,8-dihydroneopterin 3'-triphosphate
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydropteroate
5,10-methylene-tetrahydromethanopterin
7,8-dihydrofolate monoglutamate
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
reduced riboflavin
FMNH2
riboflavin
FMN
6,7-dimethyl-8-(1-D-ribityl)lumazine
uracil
thymine
cytosine
preQ1
isoguanine
CTP
UDP
dCDP
dCMP
CDP
dTMP
dUMP
UTP
dCTP
dUTP
dUDP
5,6-dihydrouracil
5,6-dihydrothymine
dTDP
dTTP
UMP
CMP
uridine
cytidine
2'-deoxyuridine
2'-deoxycytidine
thymidine
5-fluorouracil
adenosylcobalamin
precorrin-2
precorrin-1
coenzyme A
adenylo-succinate
5'-deoxyadenosine
8-oxo-GTP
ppGpp
pppGpp
8-oxo-dGTP
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
β-nicotinamide D-ribonucleotide
5-hydroxy-CTP
2-hydroxy-dATP
cyclic di-3',5'-guanylate
NAD+
NADP+
NADH
NADPH
5'-deoxy-5'-fluoroadenosine
5-fluorocytosine
(S)-NADHX
(R)-NADHX
pyridoxal 5'-phosphate
pyridoxine 5'-phosphate
pyridoxamine 5'-phosphate
cob(I)alamin
testosterone
17-β-hydroxy-5-α-androstan-3-one
progesterone
(25S)-3-oxocholest-4-en-26-oyl-CoA
(25S)-3-oxocholest-4-en-26-oate
cholest-4-en-3-one
coprostanone
cortisone
4,5α-dihydrocortisone
5-α-pregnane-3,20-dione
cholate
glycocholate
succinyl-CoA
acetyl-CoA
linoleoyl-CoA
α-linolenoyl-CoA
isobutanoyl-CoA
3'-dephospho-CoA
4-hydroxybutanoyl-CoA
(E)-glutaconyl-CoA
ω-carboxy-(9Z)-octadec-9-enoyl-CoA
oleoyl-CoA
acetoacetyl-CoA
16-hydroxypalmitoyl-CoA
palmitoyl-CoA
stearoyl-CoA
18-hydroxyoleoyl-CoA
18-hydroxystearoyl-CoA
pristanoyl-CoA
decanoyl-CoA
lauroyl-CoA
7-hydroxylauroyl-CoA
octanoyl-CoA
propanoyl-CoA
butanoyl-CoA
(Z)-15-tetracosenoyl-CoA
phytenoyl-CoA
crotonyl-CoA
(R)-methylmalonyl-CoA
(S)-methylmalonyl-CoA
S-(hydroxymethyl)glutathione
glutathione
(R)-S-lactoylglutathione
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
4-methyl-5-(2-phosphooxyethyl)thiazole
methanethiol
S-sulfanylglutathione
2-aminoprop-2-enoate
2-iminopropanoate
superoxide
hydroxyl radical
hydrogencarbonate
OH-
chloride
phosphonate
phosphate
diphosphate
triphosphate
Fe3+
Mg2+
Fe2+
Zn2+
H+
ammonium
2-chloroacetate
chloramphenicol 3-acetate
preQ0
2-octaprenylphenol
ω-saturated C55 dolichol phosphate
3-phospho-D-glyceroyl-phosphate
3-phospho-D-glycerate
2-phospho-D-glycerate
sn-glycerol 3-phosphate
β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)
2-iminosuccinate
hydrogen sulfide
oxygen
Mg-protoporphyrin
protoporphyrin IX
protoporphyrinogen IX
uroporphyrinogen-III
protoheme
DNA with lesion