an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
ammonia
enol-phenylpyruvate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
deoxycholoyl-CoA
12α-hydroxy-3-oxocholan-24-oyl-CoA
12α-hydroxy-3-oxochol-4-en-24-oyl-CoA
3-oxocholoyl-CoA
(R)-1-amino-2-propanol O-2-phosphate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(4-hydroxyphenyl)acetate
dialurate
(2R,4S)-2, 4-diaminopentanoate
(2R)-2-amino-4-oxopentanoate
urea
1,6-anhydro-N-acetyl-β-muramate
N-acetyl-D-muramate 6-phosphate
prephenate
2-iminoacetate
nicotinate adenine dinucleotide
O-acetyl-L-serine
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
thiamine diphosphate
citrate
thiamine phosphate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
α-D-glucosamine 1-phosphate
(S)-dihydroorotate
N5-carboxyaminoimidazole ribonucleotide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
N1-(5-phospho-β-D-ribosyl)glycinamide
5-oxo-L-proline
acetoacetate
L-β-lysine
β-D-ribosylnicotinate
orotidine 5'-phosphate
histidinal
D-erythro-imidazole-glycerol-phosphate
oxalosuccinate
propanoyl phosphate
3-dehydroshikimate
(S)-2-acetolactate
(S)-2-aceto-2-hydroxybutanoate
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-3-methyl-2-oxopentanoate
(2S)-2-isopropyl-3-oxosuccinate
4-methyl-2-oxopentanoate
3-ethylmalate
2-oxovalerate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
(R)-pantothenate
(R)-4'-phosphopantothenate
shikimate
3-deoxy-D-arabino-heptulosonate 7-phosphate
3-dehydroquinate
autoinducer 2
tartronate semialdehyde
4-phosphooxy-L-threonine
3-amino-1-hydroxyacetone 1-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
L-canavanine
3-methyl-2-oxobutanoate
histidinol
aminoacetone
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
(indol-3-yl)pyruvate
(indol-3 yl)acetyl-CoA
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
imidazole acetol-phosphate
L-histidinol phosphate
N-acetyl-L-glutamate 5-semialdehyde
N-acetylglutamyl-phosphate
γ-L-glutamyl 5-phosphate
canavaninosuccinate
L-arginino-succinate
acetyl phosphate
3-phosphooxypyruvate
S-methyl-5-thio-α-D-ribose 1-phosphate
5-(methylsulfanyl)-ribulose 1-phosphate
hexulose 6-phosphate
2-C-methyl-D-erythritol 4-phosphate
ethanolamine
5-aminopentanoate
dihydrolipoate
selenophosphate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
2-deoxygluconate
3-dehydro-2-deoxy-D-gluconate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
S-ribosyl-L-homocysteine
D-phenylhydantoin
N-carbamoyl-D-phenylglycine
O-ureido-L-homoserine
creatinine
7α,12α-dihydroxy-3-oxochol-4-en-24-oyl-CoA
12α-hydroxy-3-oxochol-4,6-dien-24-oyl-CoA
7-α,12-α-dihydroxy-3-oxochol-4-enoate
12-α-hydroxy-3 oxochola-4,6-dienoate
(R)-4'-phosphopantothenoyl-L-cysteine
4'-phosphopantetheine
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
coproporphyrinogen III
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
carbon monoxide
carbamoyl phosphate
carboxyphosphate
(2S)-2-isopropylmalate
(2R,3S)-3-isopropylmalate
2-isopropylmaleate
hydrogenobyrinate a,c-diamide
5,6-dimethylbenzimidazole
α-ribazole 5'-phosphate
α-ribazole
hydrogenobyrinate
5-aminolevulinate
porphobilinogen
phosphoenolpyruvate
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
DNA without lesion
glycerone phosphate
5-phospho-β-D-ribosylamine
oxaloacetate
isopentenyl diphosphate
4-prenylphlorisobutyrophenone
prenyl diphosphate
3-(O-geranylgeranyl)-sn-glycerol 1-phosphate
chloramphenicol
glycolate
H2O
CO2
β-nicotinate D-ribonucleotide
quinolinate
hydrogen peroxide
xanthine
DNA with lesion
4-methylphenol
L-homocysteine
phenylacetate
ethylphosphate
adenosylcobalamin
cob(I)alamin
adenosyl-cobinamide phosphate
cob(I)yrinate a,c-diamide
Mg-protoporphyrin
cobalt-precorrin-5B
cobalt-precorrin-6A
cobalt-precorrin-4
cobalt-precorrin-5A
cob(II)yrinate c-monoamide
cob(II)yrinate a,c-diamide
cobyrinate
adenosylcobinamide-GDP
adenosylcobalamin 5'-phosphate
adenosyl-cob(III)yrinate a,c-diamide
adenosylcobyrate
cobalt-sirohydrochlorin
cobalt-precorrin-2
protoheme
protoporphyrin IX
uroporphyrinogen-III
uroporphyrinogen-I
coproporphyrinogen I
protoporphyrinogen IX
hydrogen sulfide
oxygen
2-iminobutanoate
2-iminopropanoate
2-iminosuccinate
2-chloroacetate
sn-glycerol 3-phosphate
sn-glycerol 1-phosphate
(R)-glycerate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
(2R)-2,3-dihydroxy-3-methylbutanoate
α-D-glucosamine 6-phosphate
N-acetyl-D-mannosamine 6-phosphate
preQ0
chloramphenicol 3-acetate
N-acetyl-β-neuraminate
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
H+
K+
ammonium
Fe2+
Mg2+
Co2+
Ni2+
Zn2+
Mo2+
selenide
selenite
selenate
hydrogencarbonate
nitrate
molybdate
phosphate
triphosphate
diphosphate
chloride
(2E,6E)-farnesyl diphosphate
glycerophosphoglycerol
glycerophosphoserine
sn-glycero-3-phosphoethanolamine
glycine betaine
betaine aldehyde
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
putrescine
spermidine
S-(hydroxymethyl)glutathione
methanethiol
glutathione
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
L-cysteate
3-sulfopyruvate
(R)-S-lactoylglutathione
2-trans, 4-cis-undecadienoyl-CoA
2-trans, 4-trans-undecadienoyl-CoA
(3E)-undec-3-enoyl-CoA
(2E,4E)-tetradeca-2,4-dienoyl-CoA
(3E)-tetradec-3-enoyl-CoA
3'-dephospho-CoA
succinyl-CoA
malonyl-CoA
choloyl-CoA
(25R)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA
phenylacetyl-CoA
acetyl-CoA
(R)-2-hydroxyglutaryl-CoA
(E)-glutaconyl-CoA
crotonyl-CoA
(2E)-dec-2-enoyl-CoA
trans-Δ2, cis-Δ4-decadienoyl-CoA
oleoyl-CoA
18-hydroxylinoleoyl-CoA
butanoyl-CoA
propanoyl-CoA
cis-vaccenoyl-CoA
palmitoyl-CoA
palmitoleoyl-CoA
myristoyl-CoA
acetoacetyl-CoA
(25R)-3α,7α,12α-trihydroxy-5β-cholestan-26-oate
deoxycholate
cholate
thiamine
riboflavin
nicotinate
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
pyridoxal
pyridoxine
pyridoxamine
pyridoxamine 5'-phosphate
pyridoxine 5'-phosphate
pyridoxal 5'-phosphate
FMNH2
FMN
FAD
(R)-NADHX
(S)-NADHX
NADPH
NADH
NADP+
NAD+
1-(5-phospho-β-D-ribosyl)-AMP
1-(5-phospho-β-D-ribosyl)-ATP
adenylo-succinate
2'-deoxyadenosine
2'-deoxyinosine
2'-deoxyguanosine
pppGpp
ppGpp
dGMP
dAMP
ITP
GTP
GDP
dGTP
dGDP
dATP
dADP
hypoxanthine
5'-deoxyadenosine
GMP
cyclic-AMP
IMP
XMP
AMP
ATP
ADP
xanthosine
guanosine
adenosine
inosine
cytidine
uridine
thymidine
2'-deoxycytidine
2'-deoxyuridine
cyclic di-3',5'-guanylate
5-hydroxy-CTP
5-hydroxy-CMP
dTTP
dCTP
dUTP
UTP
CTP
dTMP
dCMP
dUMP
UMP
CMP
dTDP
dCDP
dUDP
CDP
UDP
β-nicotinamide D-ribonucleotide
ADP-α-D-glucose
preQ1
thymine
uracil
guanine
adenine
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-α-D-galactose
UDP-α-D-galactofuranose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
(R)-lipoate
coenzyme A
(S)-1-pyrroline-5-carboxylate
precorrin-3B
precorrin-4
precorrin-6B
precorrin-6A
precorrin-8x
precorrin-2
sirohydrochlorin
reduced riboflavin
6-(hydroxymethyl)-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
7,8-dihydroneopterin 3'-triphosphate
orotate
(+)-taxifolin
(+)-dihydrokaempferol
(2R,3S,4S)-leucocyanidin
(2R,3S,4S)-leucopelargonidin
urate
protocatechuate
diacetyl
methylglyoxal
formaldehyde
butan-1-al
acetaldehyde
D-glyceraldehyde
α-D-ribofuranose
α-D-glucopyranose
β-D-glucopyranose
α-D-galactopyranose
β-D-galactopyranose
ethanol
butan-1-ol
glycerol
D-sorbitol
L-iditol
1-(β-D ribofuranosyl)nicotinamide
maltotriose
selaginose
maltotetraose
maltoheptaose
maltohexaose
maltopentaose
α,α-trehalose
keto-D-fructose
keto-L-sorbose
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-mannosamine
N-acetyl-β-D-glucosamine
D-xylulose
β-D-fructofuranose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
1-O-acetyl-α-maltose
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (mycobacteria)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
N,N'-diacetylchitobiose 6'-phosphate
N-monoacetylchitobiose 6'-phosphate
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-tagatofuranose 1,6-bisphosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
L-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
L-ribulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
1-oleoyl-sn-glycerol 3-phosphate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-palmitoyl-sn-glycerol 3-phosphate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate
1,2-dimyristoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-myristoyl phosphatidate
dioleoyl phosphatidate
1,2-dicis-vaccenoyl-phosphatidate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
geranyl diphosphate
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
all-trans-heptaprenyl diphosphate
geranylgeranyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
phlorisovalerophenone
deoxyhumulone
deoxycohumulone
4-prenylphlorisovalerophenone
3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine
3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine
5-amino-4-imidazolecarboxyamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
chorismate
succinate
fumarate
L-aspartate
(S)-malate
3-carboxy-cis,cis-muconate
D-threo-isocitrate
3-oxoadipate
3-(4-hydroxyphenyl)pyruvate
3-phenyl-2-oxopropanoate
pyruvate
glyoxylate
2-oxobutanoate
4-(methylsulfanyl)-2-oxobutanoate
2-oxoglutarate
acetate
formate
(R)-lactate
butanoate
palmitate
carbamate
L-serine
L-tyrosine
glycine
L-threonine
L-glutamine
L-cysteine
L-histidine
L-arginine
L-lysine
L-glutamate
L-tryptophan
L-valine
L-alanine
L-proline
L-isoleucine
L-leucine
L-phenylalanine
L-methionine
creatine
(R)-β-lysine
D-glutamate
D-ornithine
D-proline
D-alanine
L-cystathionine
L-ornithine
L-aspartyl-4-phosphate
L,L-diaminopimelate
N-carbamoyl-L-aspartate
N-acetyl-L-ornithine
L-2-amino-3-oxobutanoate
3-phospho-L-serine
sarcosine
N-acetyl-L-glutamate
trans-4-hydroxy-L-proline
O-acetyl-L-homoserine
L-citrulline
O-succinyl-L-homoserine
L-glutamate-5-semialdehyde
L-canaline
O-phospho-L-homoserine
S-adenosyl-L-methionine
S-adenosyl-L-homocysteine
L-homoserine
L-aspartate 4-semialdehyde
meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine