an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
H2O
CO2
oxalosuccinate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
isopentenyl diphosphate
prenyl diphosphate
citrate
α-D-glucosamine 1-phosphate
glycerone phosphate
ADP-L-glycero-β-D-manno-heptose
ADP-D-glycero-β-D-manno-heptose
D-glycero-β-D-manno-heptose 1-phosphate
D-glycero-β-D-manno-heptose 1,7-bisphosphate
phosphoenolpyruvate
urea
dethiobiotin
8-amino-7-oxononanoate
pimeloyl-CoA
7,8-diaminopelargonate
L-selenocystathionine
N-acetyl-L-glutamate 5-semialdehyde
hydrogen peroxide
2-dehydropantoate
3-methyl-2-oxobutanoate
(R)-pantothenate
5-aminolevulinate
(S)-4-amino-5-oxopentanoate
porphobilinogen
2-C-methyl-D-erythritol 4-phosphate
adenosine 3',5'-bisphosphate
5-phospho-β-D-ribosylamine
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
5-amino-6-(D-ribitylamino)uracil
1-deoxy-L-glycero-tetrulose 4-phosphate
coproporphyrinogen III
UDP-4-deoxy-4-formamido-β-L-arabinopyranose
lipid IVA
lipid A disaccharide (E. coli)
oxaloacetate
N-succinyl-L,L-2,6-diaminopimelate
nicotinate adenine dinucleotide
N-succinyl-2-amino-6-ketopimelate
(S)-2,3,4,5-tetrahydrodipicolinate
L-canavanine
DNA without lesion
N-acetyl-D-muramate 6-phosphate
1,6-anhydro-N-acetyl-β-muramate
methylsalicylate
salicyl alcohol
orotidine 5'-phosphate
lipid X
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
thiamine phosphate
4'-phosphopantetheine
propanoyl phosphate
4-amino-4-deoxychorismate
phosphocholine
O-phosphoethanolamine
ethanolamine
chloramphenicol
methyl-1,4-benzoquinol
2-methyl-1,4-benzoquinone
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
isochorismate
β-nicotinate D-ribonucleotide
glycolate
3-deoxy-D-manno-octulosonate 8-phosphate
thiamine diphosphate
xanthine
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
5-methylcytosine
3-deoxy-α-D-manno-2-octulosonate
FK-506
31-O-desmethylFK-506
2-phosphoglycolate
(R)-4'-phosphopantothenate
(S)-dihydroorotate
carbamoyl phosphate
carboxyphosphate
preuroporphyrinogen
carbonic acid
2-dehydro-3-deoxy-D-gluconate
L-arginino-succinate
core oligosaccharide-lipid A (E. coli K-12 core type)
glutathione disulfide
autoinducer 2
S-ribosyl-L-homocysteine
4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate
4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
enol-phenylpyruvate
ammonia
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
sulfate
nitrate
hydrogencarbonate
superoxide
sulfite
thiosulfate
OH-
hydrogensulfite
chloride
phosphate
diphosphate
Fe3+
Zn2+
Fe2+
ammonium
H+
2-chloroacetate
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-deoxy-5'-fluoroadenosine
chloramphenicol 3-acetate
hydrogen cyanide
preQ0
2-methoxy-6-(all-trans-octaprenyl)phenol
2-octaprenylphenol
3-(all-trans-octaprenyl)benzene-1,2-diol
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
sn-glycerol 3-phosphate
2-iminopropanoate
2-iminobutanoate
oxygen
protoporphyrinogen IX
coproporphyrinogen I
uroporphyrinogen-I
uroporphyrinogen-III
protoporphyrin IX
protoheme
ethylphosphate
L-homocysteine
DNA with lesion
γ-L-glutamyl-L-cysteine
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
carbamate
L-α-amino-ε-keto-pimelate
seleno-L-homocysteine
L-aspartyl-4-phosphate
N-acetyl-L-ornithine
N-carbamoyl-L-aspartate
L-cysteine
L-methionine
L-ornithine
L-glutamate
L-serine
L-glutamine
L-alanine
L-cystathionine
L-lysine
L-aspartate
L,L-diaminopimelate
L-arginine
L-phenylalanine
L-asparagine
L-leucine
L-tyrosine
D-alanine
D-glutamate
glycine
β-alanine
L-citrulline
L-glutamate-5-semialdehyde
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
L-canaline
1-aminocyclopropane-1-carboxylate
L-aspartate 4-semialdehyde
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
meso-diaminopimelate
octanoate
laurate
7-hydroxylaurate
decanoate
acetate
pyruvate
formate
(R)-lactate
2-oxoglutarate
2-oxobutanoate
3-phenyl-2-oxopropanoate
cis-aconitate
D-threo-isocitrate
chorismate
α,ω-9Z-octadecenedioate
fumarate
succinate
(S)-malate
salicylate
2,3-dihydroxybenzoate
4-aminobenzoate
(R)-pantoate
orotate
D-mannonate
(S)-1-pyrroline-5-carboxylate
pristanate
(15Z)-tetracosenoate
palmitate
stearate
18-hydroxyoleate
16-hydroxypalmitate
18-hydroxystearate
oleate
phytenate
linoleate
α-linolenate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
(heptosyl)2-Kdo2-lipid A
heptosyl-Kdo2-lipid A
α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A
α-Kdo-(2→6)-lipid IVA
heptosyl-Kdo2-lipid IVA
α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA
glucosyl-(heptosyl)2-Kdo2-lipid A
glucosyl-(heptosyl)2-Kdo2-lipid A-phosphate
glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate
glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-(glucosyl)2-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-(glucosyl)3-(heptosyl)3-Kdo2-lipid A-bisphosphate
4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A
trans,octacis-decaprenyl phosphate
(2E,6E)-farnesyl diphosphate
all-trans-retinyl palmitate
all-trans-retinol
3-heptaprenyl-4-hydroxybenzoate
3-nonaprenyl-4-hydroxybenzoate
3-octaprenyl-4-hydroxybenzoate
3-decaprenyl-4-hydroxybenzoate
3-hexaprenyl-4-hydroxybenzoate
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
all-trans-heptaprenyl diphosphate
all-trans-nonaprenyl diphosphate
all-trans-octaprenyl diphosphate
all-trans-decaprenyl diphosphate
all-trans-hexaprenyl diphosphate
1-oleoyl-2-palmitoyl-phosphatidylglycerol
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
5-phospho-α-D-ribose 1-diphosphate
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
α-D-glucopyranose 1-phosphate
α-D-mannose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-fructofuranose 6-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-arabinofuranose 5-phosphate
aldehydo-D-arabinose 5-phosphate
aldehydo-D-ribose 5-phosphate
D-ribulose 5-phosphate
D-glyceraldehyde 3-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with D,D cross-link (S. aureus)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
CMP-3-deoxy-β-D-manno-octulosonate
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
UDP-N-acetyl-α-D-muramate
UDP-α-D-galactose
UDP-α-D-glucose
UDP-β-L-threo-pentapyranos-4-ulose
UDP-4-amino-4-deoxy-β-L-arabinopyranose
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-α-D-glucuronate
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
GDP-4-dehydro-α-D-rhamnose
GDP-α-D-mannose
glycerol
D-glyceraldehyde
glycolaldehyde
N-acetyl-β-D-glucosamine
1-dodecanol
ethanol
methanol
catechol
myo-inositol
scyllo-inosose
1D-myo-inositol 3-monophosphate
acetaldehyde
formaldehyde
menadione
caldariellaquinone
toluene
6-hydroxy-2-cyclohexen-one-carboxylate
salicyl-6-hydroxy-2-cyclohexene-on-oyl
4-hydroxybenzoate
phenol
menadiol
2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol
6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol
caldariellaquinol
3-demethylubiquinol-8
3-demethylubiquinol-10
3-demethylubiquinol-9
3-demethylubiquinol-7
demethylmenaquinol-8
menaquinol-8
ubiquinol-8
ubiquinol-10
ubiquinol-9
ubiquinol-7
adenine
guanine
GMP
AMP
IMP
XMP
ATP
GTP
ITP
ADP
GDP
IDP
dGDP
dADP
dIDP
dATP
dITP
dGTP
hypoxanthine
adenosine
inosine
guanosine
xanthosine
2'-deoxyinosine
2'-deoxyadenosine
2'-deoxyguanosine
tetrahydromethanopterin
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydromonapterin
7,8-dihydroneopterin
5,10-methylene-tetrahydromethanopterin
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
FAD
FMN
riboflavin
6,7-dimethyl-8-(1-D-ribityl)lumazine
precorrin-2
precorrin-1
preQ1
isoguanine
thymine
uracil
cytosine
dUMP
dTMP
UTP
CTP
dUTP
dTDP
UDP
dCDP
dCMP
CDP
dUDP
dCTP
dTTP
CDP-choline
5-fluorouracil
CMP
UMP
cytidine
uridine
2'-deoxyuridine
thymidine
2'-deoxycytidine
coenzyme A
adenylo-succinate
5'-deoxyadenosine
pppGpp
cyclic-AMP
ppGpp
8-oxo-GTP
8-oxo-dGTP
5-fluorocytosine
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
5-hydroxy-CTP
2-hydroxy-dATP
NADP+
NAD+
NADPH
NADH
P1,P4-bis(5'-adenosyl) tetraphosphate
(S)-NADHX
(R)-NADHX
nicotinate
thiamine
pyridoxamine 5'-phosphate
pyridoxamine
pyridoxine 5'-phosphate
pyridoxine
pyridoxal 5'-phosphate
pyridoxal
(indol-3-yl)acetate
methyl (indol-3-yl)acetate
(+)-7-epi-jasmonate
malonyl-CoA
acetyl-CoA
(+)-7-epi-jasmonoyl-CoA
succinyl-CoA
α-linolenoyl-CoA
linoleoyl-CoA
3'-dephospho-CoA
isobutanoyl-CoA
oleoyl-CoA
ω-carboxy-(9Z)-octadec-9-enoyl-CoA
16-hydroxypalmitoyl-CoA
palmitoyl-CoA
stearoyl-CoA
18-hydroxyoleoyl-CoA
18-hydroxystearoyl-CoA
pristanoyl-CoA
octanoyl-CoA
lauroyl-CoA
7-hydroxylauroyl-CoA
decanoyl-CoA
propanoyl-CoA
(Z)-15-tetracosenoyl-CoA
(S)-malyl-CoA
phytenoyl-CoA
S-(hydroxymethyl)glutathione
3-sulfopyruvate
L-cysteate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
4-methyl-5-(2-phosphooxyethyl)thiazole
glutathione
thiocyanate
(R)-S-lactoylglutathione
dodecyl sulfate
choline
agmatine
putrescine
spermidine
dehydrospermidine
cadaverine
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
glycerophosphoserine
glycerophosphoglycerol
sn-glycero-3-phosphoethanolamine
hydroxyl radical