an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
glutathione disulfide
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
coenzyme B
CoB-CoM heterodisulfide
dihydromethanophenazine
(2S)-2-isopropyl-3-oxosuccinate
3-ethylmalate
2-dehydro-3-deoxy-D-galactonate 6-phosphate
4-phosphooxy-L-threonine
D-erythro-imidazole-glycerol-phosphate
histidinal
(indol-3-yl)acetamide
2-oxovalerate
3-amino-1-hydroxyacetone 1-phosphate
2-dehydro-3-deoxy-D-galactonate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
methanophenazine
bisorganyltrisulfane
enol-phenylpyruvate
pyruvic oxime
1,2-dihydro-β-NADP
aminoacetone
butyramide
propionamide
acrylamide
4-fumaryl-acetoacetate
(2Z,4E)-2-hydroxyhexa-2,4-dienedioate
1-deoxy-L-glycero-tetrulose 4-phosphate
5-amino-6-(D-ribitylamino)uracil
5-amino-6-(5-phospho-D-ribitylamino)uracil
5-amino-6-(5-phospho-D-ribosylamino)uracil
2-C-methyl-D-erythritol 4-phosphate
2-maleylacetate
propanoyl phosphate
4'-phosphopantetheine
4-methyl-3-oxoadipate
7-carboxy-7-deazaguanine
(2S,3S)-2,3-dihydroxy-5-oxohexanedioate
tartronate semialdehyde
hydroxypyruvate
2-dehydro-3-deoxy-D-gluconate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
4-prenylphlorisobutyrophenone
3-(O-geranylgeranyl)-sn-glycerol 1-phosphate
(S)-4-amino-5-oxopentanoate
carbon monoxide
quinolinate
2-oxopent-4-enoate
(S)-4-hydroxy-2-oxopentanoate
carbonic acid
γ-L-glutamyl 5-phosphate
urea
urea-1-carboxylate
orotidine 5'-phosphate
(S)-2-acetolactate
(S)-2-aceto-2-hydroxybutanoate
formamide
2-iminoacetate
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
2-methyl-1,4-benzoquinone
methyl-1,4-benzoquinol
D-gluconate 6-phosphate
(R)-1-amino-2-propanol O-2-phosphate
5,6-dimethylbenzimidazole
β-nicotinate D-ribonucleotide
α-ribazole 5'-phosphate
hydrogenobyrinate
hydrogenobyrinate a,c-diamide
3-deoxy-D-arabino-heptulosonate 7-phosphate
shikimate
3-dehydroshikimate
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
3-ureidopropanoate
mesaconate
citrate
N-acetylglutamyl-phosphate
N-acetyl-L-glutamate 5-semialdehyde
O-ureido-L-homoserine
L-arginino-succinate
canavaninosuccinate
L-canavanine
4-methyl-2-oxopentanoate
α-D-glucosamine 1-phosphate
acetoacetate
L-quinate
3-dehydroquinate
(R)-4'-phosphopantothenate
(R)-pantothenate
ethanolamine
oxaloacetate
isochorismate
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
prephenate
N-(5-phosphoribosyl)-anthranilate
anthranilate
nicotinate adenine dinucleotide
ammonia
hydroxylamine
8-amino-7-oxononanoate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
5-dehydro-4-deoxy-D-glucarate
2-deoxygluconate
3-dehydro-2-deoxy-D-gluconate
preuroporphyrinogen
5-aminolevulinate
porphobilinogen
selenophosphate
salicyl alcohol
methylsalicylate
thiamine phosphate
thiamine diphosphate
N5-carboxyaminoimidazole ribonucleotide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
formate
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
imidazole acetol-phosphate
DNA without lesion
coproporphyrinogen III
(S)-dihydroorotate
carboxyphosphate
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-3-methyl-2-oxopentanoate
glycerone phosphate
O-acetyl-L-serine
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
butanoyl phosphate
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
ManNAc-GlcNAc-PP-undecaprenol
S-methyl-5'-thioadenosine
S-methyl-5-thio-α-D-ribose 1-phosphate
5-(methylsulfanyl)-ribulose 1-phosphate
deethylsimazine
N-ethylammeline
1-pyrroline
2,5-dioxopentanoate
prenyl diphosphate
isopentenyl diphosphate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
hydrogen peroxide
7,8-diaminopelargonate
pimelate
pimeloyl-CoA
dethiobiotin
lipid X
lipid A disaccharide (E. coli)
lipid IVA
3-deoxy-α-D-manno-2-octulosonate
3-deoxy-D-manno-octulosonate 8-phosphate
4-amino-4-deoxychorismate
3-phosphooxypyruvate
(2S)-2-isopropylmalate
(2R,3S)-3-isopropylmalate
2-isopropylmaleate
L-histidinol phosphate
histidinol
glycolate
3-methyl-2-oxobutanoate
2-dehydropantoate
H2O
H2
carbamoyl phosphate
phosphoenolpyruvate
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
CO2
S-adenosyl 3-(methylsulfanyl)propylamine
4-aminobutanoate
2-iminosuccinate
2-iminopropanoate
2-iminobutanoate
4-methylphenol
L-homocysteine
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
sn-glycerol 1-phosphate
sn-glycerol 3-phosphate
hydrogen cyanide
DNA with lesion
ethylphosphate
cob(I)yrinate a,c-diamide
cob(I)inamide
adenosyl-cob(III)yrinate a,c-diamide
adenosylcobyrate
adenosylcobinamide
adenosyl-cobinamide phosphate
cobalt-precorrin-4
cobalt-precorrin-5A
cobalt-precorrin-5B
cobalt-precorrin-6A
cob(II)yrinate c-monoamide
cob(II)yrinate a,c-diamide
cobyrinate
Mg-protoporphyrin
cob(I)alamin
adenosylcobalamin
protoheme
uroporphyrinogen-I
uroporphyrinogen-III
protoporphyrin IX
protoporphyrinogen IX
siroheme
oxygen
hydrogen sulfide
2-chloroacetate
(R)-glycerate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
(2R)-2,3-dihydroxy-3-methylbutanoate
3-cyanopyridine
propionitrile
acrylonitrile
preQ0
(indole-3-yl)acetonitrile
n-butyronitrile
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
Fe3+
K+
ammonium
H+
Fe2+
Mg2+
Co2+
nitrate
selenide
OH-
hydrogencarbonate
superoxide
nitrite
phosphonate
phosphate
triphosphate
diphosphate
chloride
hydroxyl radical
(2E,6E)-farnesyl diphosphate
glycerophosphoglycerol
glycerophosphoserine
sn-glycero-3-phosphoethanolamine
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
4-aminobutanal
cadaverine
spermidine
putrescine
glutathione
methanethiol
S-sulfanylglutathione
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
taurine
coenzyme M
(2R)-3-sulfolactate
(2R)-phospho-3-sulfolactate
all-trans-retinyl palmitate
cis-dienelactone
trans-dienelactone
malonyl-CoA
3'-dephospho-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
4-hydroxybutanoyl-CoA
2-methylacetoacetyl-CoA
isobutanoyl-CoA
acetyl-CoA
(R)-2-hydroxyglutaryl-CoA
(E)-glutaconyl-CoA
succinyl-CoA
(S)-methylmalonyl-CoA
(R)-methylmalonyl-CoA
crotonyl-CoA
oleoyl-CoA
18-hydroxylinoleoyl-CoA
(S)-3-hydroxybutanoyl-CoA
propanoyl-CoA
butanoyl-CoA
lauroyl-CoA
cis-vaccenoyl-CoA
palmitoyl-CoA
palmitoleoyl-CoA
myristoyl-CoA
3-oxoadipyl-CoA
4-methyl-3-oxoadipyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
methyl (indol-3-yl)acetate
(indol-3-yl)acetate
nicotinamide
nicotinate
riboflavin
all-trans-retinol
7,8-dihydrofolate monoglutamate
5,10-methylene-tetrahydromethanopterin
tetrahydromethanopterin
FAD
FMNH2
FMN
(R)-NADHX
(S)-NADHX
NADPH
NADH
NADP+
NAD+
caldariellaquinone
caldariellaquinol
menaquinol-8
demethylmenaquinol-8
ppGpp
2'-deoxyinosine
2'-deoxyadenosine
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
isoguanine
8-oxo-dGTP
8-oxo-GTP
dIDP
dITP
IDP
ITP
dGDP
dADP
XTP
adenylo-succinate
hypoxanthine
GMP
dATP
dGTP
pppGpp
IMP
XMP
GTP
GDP
5'-deoxyadenosine
AMP
ATP
ADP
(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)
two adjacent thymidines in DNA
guanosine
adenosine
inosine
cytidine
uridine
2'-deoxycytidine
2'-deoxyuridine
thymidine
cyclic di-3',5'-guanylate
2-hydroxy-dATP
5-hydroxy-CTP
dTTP
dCTP
dUTP
UTP
CTP
dUMP
dTMP
dCMP
CMP
UMP
dUDP
dTDP
dCDP
CDP
UDP
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
GDP-4-dehydro-α-D-rhamnose
GDP-α-D-mannose
GDP-β-L-fucose
ADP-α-D-glucose
preQ1
uracil
thymine
guanine
adenine
5,6-dihydrouracil
5,6-dihydrothymine
CMP-3-deoxy-β-D-manno-octulosonate
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-α-D-galactose
UDP-N-acetyl-α-D-mannosamine
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
coenzyme A
thio-molybdenum cofactor
MoO2-molybdopterin cofactor
guanylyl molybdenum cofactor
(S)-1-pyrroline-5-carboxylate
precorrin-6A
precorrin-3A
precorrin-6B
precorrin-7
precorrin-8x
precorrin-1
precorrin-2
sirohydrochlorin
hydantoin
6,7-dimethyl-8-(1-D-ribityl)lumazine
reduced riboflavin
6-(hydroxymethyl)-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydropteroate
6-carboxy-5,6,7,8-tetrahydropterin
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
orotate
salicyl-6-hydroxy-2-cyclohexene-on-oyl
6-hydroxy-2-cyclohexen-one-carboxylate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
2,3-dihydroxybenzoate
protocatechuate
salicylate
4-aminobenzoate
diacetyl
methylglyoxal
1-propanal
butan-1-al
acetaldehyde
L-glyceraldehyde
D-glyceraldehyde
aldehydo-D-ribose
α-D-ribofuranose
β-D-ribofuranose
β-D-mannopyranose
aldehydo-D-mannose
butan-1-ol
propan-1-ol
ethanol
methanol
glycerol
D-mannitol
aldehydo-D-galacturonate
α-Kdo-(2→6)-lipid IVA
maltotriose
maltotetraose
maltopentaose
maltoheptaose
maltohexaose
keto-D-fructose
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-glucosamine 1-phosphate
D-xylulose
β-D-fructofuranose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (mycobacteria)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (E. faecium, tetrapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-tagatofuranose 1,6-bisphosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
D-xylulose 5-phosphate
D-arabinofuranose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-ribulose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
α-D-mannose 1-phosphate
D-altronate
D-gluconate
1-oleoyl-sn-glycerol 3-phosphate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-palmitoyl-sn-glycerol 3-phosphate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate
1,2-dimyristoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-myristoyl phosphatidate
dioleoyl phosphatidate
1,2-dicis-vaccenoyl-phosphatidate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
geranyl diphosphate
mono-trans,octa-cis-decaprenyl diphosphate
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
geranylgeranyl diphosphate
all-trans-heptaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
phlorisovalerophenone
deoxyhumulone
deoxycohumulone
4-prenylphlorisovalerophenone
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
(3E)-2-oxohex-3-enedioate
chorismate
succinate
fumarate
L-aspartate
(S)-malate
D-glucarate
D-galactarate
3-(carbamoylamino)-2-methylpropanoate
3-oxoadipate
3-phenyl-2-oxopropanoate
glyoxylate
2-oxobutanoate
2-oxoglutarate
pyruvate
propanoate
butanoate
laurate
(R)-lactate
palmitate
(R)-pantoate
acetate
D-tagaturonate
carbamate
L-serine
L-cysteine
L-tyrosine
L-asparagine
L-threonine
L-glutamine
glycine
L-lysine
L-histidine
L-arginine
L-glutamate
L-methionine
L-valine
L-leucine
L-isoleucine
L-tryptophan
L-proline
L-alanine
β-alanine
(R)-3-amino-2-methylpropanoate
D-glutamate
D-aspartate
D-alanine
L,L-diaminopimelate
L-aspartyl-4-phosphate
L-ornithine
N-carbamoyl-L-aspartate
N-acetyl-L-ornithine
L-2-amino-3-oxobutanoate
L-threonine 3-O-phosphate
3-phospho-L-serine
(2S, 3S)-3-methylaspartate
N-carbamoylglycine
N-acetyl-L-glutamate
trans-4-hydroxy-L-proline
O-acetyl-L-homoserine
L-citrulline
hypoglycin A
L-canaline
L-glutamate-5-semialdehyde
O-phospho-L-homoserine
L-homoserine
L-aspartate 4-semialdehyde
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
meso-diaminopimelate
hypoglycin B
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-cysteinylglycine
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine