an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
ammonia
enol-phenylpyruvate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
1,2-dihydro-β-NADP
4-oxoglutaramate
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
3-phosphooxypyruvate
glutathione disulfide
(S)-3-methyl-2-oxopentanoate
N-acetyl-D-muramate 6-phosphate
4-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
quinolinate
(R)-pantothenate
4'-phosphopantetheine
(R)-4'-phosphopantothenate
(R)-4'-phosphopantothenoyl-L-cysteine
urea
(lipoyl)adenylate
(2Z,4E)-2-hydroxyhexa-2,4-dienedioate
xanthine
(R)-mevalonate diphosphate
(R)-mevalonate
(R)-5-phosphomevalonate
2-dehydropantoate
D-gluconate 6-phosphate
carboxyphosphate
carbamoyl phosphate
methylsalicylate
3-keto-L-gulonate 6-phosphate
carbonic acid
O-acetyl-L-serine
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
3-dehydroquinate
3-dehydroshikimate
β-nicotinate D-ribonucleotide
nicotinate adenine dinucleotide
S-ribosyl-L-homocysteine
autoinducer 2
acetoacetate
5-dehydro-D-gluconate
3-(4-deoxy-β-D-gluc-4-enuronosyl)-N-acetyl-D-glucosamine
oxaloacetate
1,4-dihydroxy-2-naphthoate
prephenate
(S)-2,3-dihydrodipicolinate
acetyl phosphate
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
β-D-ribosylnicotinate
thiamine diphosphate
O-ureido-L-homoserine
3-deoxy-D-arabino-heptulosonate 7-phosphate
salicyl alcohol
glycerone phosphate
L-arginino-succinate
canavaninosuccinate
L-canavanine
4-amino-4-deoxychorismate
propanoyl phosphate
coproporphyrinogen III
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
CO2
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
formamide
4-imidazolone-5-propanoate
urocanate
isopentenyl diphosphate
4,4'-dihydroxy-3,3'-dimethoxystilbene
vanillin
2-(α-hydroxyethyl)thiamine diphosphate
α-D-glucosamine 1-phosphate
hydrogen peroxide
luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate
luteolin 7-O-β-D-diglucuronide
luteolin 7-O-β-D-glucuronide
2-dehydro-3-deoxy-D-gluconate 6-phosphate
orotidine 5'-phosphate
(S)-dihydroorotate
2-dehydro-3-deoxy-D-gluconate
glycolate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
1,6-anhydro-N-acetyl-β-muramate
5-enolpyruvoyl-shikimate 3-phosphate
shikimate
shikimate 3-phosphate
DNA without lesion
poly(ribitol phosphate)
O-D-alanyl-poly(ribitol phosphate)
4-hydroxy-2-nonenal
prenyl diphosphate
L-selenocystathionine
H2O
formate
phosphoenolpyruvate
γ-L-glutamyl 5-phosphate
(glutathion-S-yl)-4-hydroxy-2-nonenal
DNA with lesion
L-homocysteine
ethylphosphate
hydrogen cyanide
protoheme
protoporphyrin IX
uroporphyrinogen-III
protoporphyrinogen IX
hydrogen sulfide
oxygen
2-iminosuccinate
2-iminopropanoate
2-chloroacetate
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
2-phospho-D-glycerate
3-phospho-D-glycerate
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
α-D-glucosamine 6-phosphate
N-acetyl-D-mannosamine 6-phosphate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
preQ0
1-chloro-2,4-dinitrobenzene
2,4-dinitrophenyl-S-glutathione
N-acetyl-β-neuraminate
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
Fe3+
ammonium
H+
Mg2+
Cu2+
Co2+
Zn2+
Mn2+
Fe2+
hydrogensulfite
OH-
hydrogencarbonate
thiosulfate
sulfite
superoxide
phosphonate
phosphate
diphosphate
chloride
hydroxyl radical
(2E,6E)-farnesyl diphosphate
1-oleoyl-2-palmitoyl-phosphatidylglycerol
ferrichrome
2-aminoprop-2-enoate
spermidine
putrescine
γ-L-glutamyl-[(S)-allyl]-L-cysteine
S-allyl-L-cysteine
γ-L-glutamyl-(S)-methyl-L-cysteine
γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine
S-trans-1-propenyl-L-cysteine
thiocyanate
glutathione
L-cysteate
3-sulfopyruvate
(R)-S-lactoylglutathione
all-trans-retinyl palmitate
(S)-3-hydroxy-3-methylglutaryl-CoA
malonyl-CoA
succinyl-CoA
2-methylacetoacetyl-CoA
acetyl-CoA
3'-dephospho-CoA
oleoyl-CoA
acetoacetyl-CoA
3-oxopentanoyl-CoA
cis-vaccenoyl-CoA
palmitoleoyl-CoA
myristoyl-CoA
butanoyl-CoA
propanoyl-CoA
18-hydroxylinoleoyl-CoA
18-hydroxyoleoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
hexadecanedioyl-CoA
crotonyl-CoA
methyl (indol-3-yl)acetate
(indol-3-yl)acetate
riboflavin
nicotinate
thiamine
all-trans-retinol
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
7,8-dihydrofolate monoglutamate
pyridoxamine
pyridoxamine 5'-phosphate
FMNH2
FMN
(R)-NADHX
(S)-NADHX
NADH
NADPH
NAD+
NADP+
demethylmenaquinol-8
glycine betaine
isoguanine
8-oxo-dGTP
8-oxo-GTP
dATP
dGTP
XMP
hypoxanthine
pppGpp
ppGpp
cyclic-AMP
adenosine 2',3'-cyclic monophosphate
guanosine 2',3'-cyclic monophosphate
guanosine 3'-monophosphate
adenosine 3'-monophosphate
GMP
IMP
5'-deoxyadenosine
adenylo-succinate
dIDP
dITP
IDP
ITP
dADP
dGDP
2'-deoxyadenosine
2'-deoxyguanosine
2'-deoxyinosine
GTP
GDP
AMP
ATP
ADP
xanthosine
guanosine
inosine
adenosine
uridine
cytidine
2'-deoxycytidine
thymidine
2'-deoxyuridine
uridine 2'3'-cyclic monophosphate
cytidine 2',3'-cyclic monophosphate
2-hydroxy-dATP
5-hydroxy-CTP
dUTP
dCTP
dTTP
UTP
CTP
dUMP
dTMP
dCMP
UMP
CMP
dTDP
dCDP
dUDP
CDP
UDP
β-nicotinamide D-ribonucleotide
uridine 3'-monophosphate
cytidine-3'-monophosphate
ADP-α-D-glucose
preQ1
thymine
uracil
guanine
adenine
UDP-α-D-glucose
dTDP-α-D-glucose
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-β-L-rhamnose
dTDP-4-dehydro-β-L-rhamnose
(R)-lipoate
coenzyme A
(S)-1-pyrroline-5-carboxylate
reduced riboflavin
7,8-dihydroneopterin 3'-phosphate
(7,8-dihydropterin-6-yl)methyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
7,8-dihydroneopterin
7,8-dihydromonapterin
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydropteroate
dipicolinate
orotate
luteolin
urate
salicyl-6-hydroxy-2-cyclohexene-on-oyl
6-hydroxy-2-cyclohexen-one-carboxylate
hydroquinone
salicylate
4-aminobenzoate
methylglyoxal
glycolaldehyde
acetaldehyde
(S)-lactaldehyde
D-glyceraldehyde
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
β-D-ribopyranose
ethanol
methanol
glycerol
myo-inositol
1D-myo-inositol 1-monophosphate
1D-myo-inositol 3-monophosphate
1-(β-D ribofuranosyl)nicotinamide
5-dehydro-4-deoxy-D-glucuronate
aldehydo-D-galacturonate
maltotriose
maltotetraose
maltopentaose
maltoheptaose
maltohexaose
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-mannosamine
N-acetyl-β-D-glucosamine
β-D-fructofuranose
4-deoxy-L-threo-hex-4-enopyranuronate
1-O-acetyl-α-maltose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)
a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
N,N'-diacetylchitobiose 6'-phosphate
N-monoacetylchitobiose 6'-phosphate
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-tagatofuranose 1,6-bisphosphate
β-D-fructose 1,6-bisphosphate
salicin 6-phosphate
arbutin-6-phosphate
keto-L-tagatose 6-phosphate
D-fructose 6-phosphate
L-ascorbate 6-phosphate
D-tagatofuranose 6-phosphate
β-D-fructofuranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
L-xylulose 5-phosphate
D-xylulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
L-ribulose 5-phosphate
D-ribulose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
L-rhamnulose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
methyl β-D-glucoside 6-phosphate
D-altronate
L-idonate
D-gluconate
D-mannonate
1-oleoyl-sn-glycerol 3-phosphate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-palmitoyl-sn-glycerol 3-phosphate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate
1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate
1,2-dimyristoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-myristoyl phosphatidate
dioleoyl phosphatidate
1,2-dicis-vaccenoyl-phosphatidate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
geranyl diphosphate
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
all-trans-heptaprenyl diphosphate
all-trans-octaprenyl diphosphate
geranylgeranyl diphosphate
3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine
3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
(3E)-2-oxohex-3-enedioate
chorismate
succinate
L-aspartate
fumarate
3-phenyl-2-oxopropanoate
2-oxoglutarate
pyruvate
butanoate
(R)-3-hydroxybutanoate
(S)-lactate
(R)-lactate
palmitate
(R)-pantoate
acetate
D-tagaturonate
β-D-glucuronate
carbamate
L-serine
L-cysteine
L-tyrosine
L-asparagine
L-glutamine
glycine
L-arginine
L-histidine
L-glutamate
L-methionine
L-leucine
L-valine
L-proline
L-isoleucine
L-alanine
L-phenylalanine
β-alanine
D-glutamate
D-alanine
L-isoglutamine
L-ornithine
L,L-diaminopimelate
L-cystathionine
N-carbamoyl-L-aspartate
formyl-L-isoglutamine
N-formimino-L-glutamate
seleno-L-homocysteine
3-phospho-L-serine
S-methyl-L-cysteine
trans-4-hydroxy-L-proline
L-citrulline
S-adenosyl-L-homocysteine
L-glutamate-5-semialdehyde
L-aspartate 4-semialdehyde
L-canaline
S-adenosyl-L-methionine
meso-diaminopimelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
D-alanyl-D-alanine
γ-L-glutamyl-L-cysteine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine