an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
ammonia
enol-phenylpyruvate
1,2-dihydro-β-NADP
4-oxoglutaramate
glutathione disulfide
urea
formamide
(E)-glutaconate
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
ManNAc-GlcNAc-PP-undecaprenol
(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate
4-imidazolone-5-propanoate
urocanate
3-phosphooxypyruvate
β-D-ribosylnicotinate
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
D-gluconate 6-phosphate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
nicotinate adenine dinucleotide
urea-1-carboxylate
O-acetyl-L-serine
deethylsimazine
N-ethylammeline
glycolate
1-deoxy-L-glycero-tetrulose 4-phosphate
5-amino-6-(D-ribitylamino)uracil
(R)-pantothenate
(R)-4'-phosphopantothenate
(S)-dihydroorotate
L-canavanine
DNA without lesion
thiamine diphosphate
coproporphyrinogen III
2-C-methyl-D-erythritol 4-phosphate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
prenyl diphosphate
shikimate
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
3-deoxy-D-arabino-heptulosonate 7-phosphate
acetyl phosphate
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
N5-carboxyaminoimidazole ribonucleotide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
xanthine
γ-L-glutamyl 5-phosphate
β-nicotinate D-ribonucleotide
quinolinate
hydrogen peroxide
glycerone phosphate
phosphoenolpyruvate
α-D-glucosamine 1-phosphate
4'-phosphopantetheine
oxaloacetate
L-arginino-succinate
O-ureido-L-homoserine
canavaninosuccinate
isopentenyl diphosphate
3-dehydroquinate
3-dehydroshikimate
orotidine 5'-phosphate
CO2
carbamoyl phosphate
carboxyphosphate
H2O
DNA with lesion
L-homocysteine
protoheme
protoporphyrin IX
protoporphyrinogen IX
uroporphyrinogen-III
siroheme
hydrogen sulfide
oxygen
2-iminobutanoate
2-iminopropanoate
2-iminosuccinate
2-chloroacetate
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
3-phospho-D-glycerate
2-phospho-D-glycerate
(R)-2-hydroxyglutarate
preQ0
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
Fe3+
ammonium
Na+
H+
Fe2+
OH-
superoxide
hydrogencarbonate
phosphate
triphosphate
diphosphate
chloride
hydroxyl radical
(2E,6E)-farnesyl diphosphate
1-oleoyl-2-palmitoyl-phosphatidylglycerol
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
putrescine
S-(hydroxymethyl)glutathione
glutathione
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
L-cysteate
3-sulfopyruvate
(R)-S-lactoylglutathione
succinyl-CoA
(R)-2-hydroxyglutaryl-CoA
(E)-glutaconyl-CoA
4-hydroxybutanoyl-CoA
malonyl-CoA
2-methylacetoacetyl-CoA
acetyl-CoA
3'-dephospho-CoA
crotonyl-CoA
oleoyl-CoA
18-hydroxylinoleoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
(S)-3-hydroxybutanoyl-CoA
propanoyl-CoA
cis-vaccenoyl-CoA
palmitoleoyl-CoA
myristoyl-CoA
3-oxopentanoyl-CoA
acetoacetyl-CoA
nicotinate
riboflavin
thiamine
all-trans-retinal
tetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
(R)-NADHX
(S)-NADHX
NADPH
NADH
NADP+
NAD+
isoguanine
8-oxo-dGTP
8-oxo-GTP
adenylo-succinate
GMP
5'-deoxyadenosine
cyclic-AMP
pppGpp
2'-deoxyadenosine
2'-deoxyguanosine
2'-deoxyinosine
hypoxanthine
dGTP
dATP
dADP
dGDP
GTP
GDP
IMP
XMP
AMP
ADP
ATP
inosine
xanthosine
guanosine
adenosine
cytidine
uridine
thymidine
2'-deoxycytidine
2'-deoxyuridine
cyclic di-3',5'-guanylate
2-hydroxy-dATP
5-hydroxy-CTP
dTTP
dCTP
dUTP
CTP
UTP
dTMP
dUMP
CMP
UMP
dTDP
dUDP
dCDP
CDP
UDP
β-nicotinamide D-ribonucleotide
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
preQ1
uracil
adenine
guanine
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
coenzyme A
(S)-1-pyrroline-5-carboxylate
precorrin-2
precorrin-1
sirohydrochlorin
6,7-dimethyl-8-(1-D-ribityl)lumazine
6-(hydroxymethyl)-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate
7,8-dihydroneopterin 3'-triphosphate
orotate
urate
methylglyoxal
butan-1-al
formaldehyde
acetaldehyde
D-glyceraldehyde
butan-1-ol
methanol
ethanol
glycerol
1-(β-D ribofuranosyl)nicotinamide
cellotetraose
β-D-cellobiose
N-acetyl-α-D-glucosamine 1-phosphate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer (S. aureus)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (mycobacteria)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan dimer (E. faecium, tetrapeptide)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
D-glyceraldehyde 3-phosphate
4-phospho-D-erythronate
5-phospho-α-D-ribose 1-diphosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
β-D-fructofuranose 1-phosphate
1-oleoyl-sn-glycerol 3-phosphate
1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate
1-myristoyl-sn-glycerol 3-phosphate
1-palmitoyl-sn-glycerol 3-phosphate
1-cis-vaccenoyl-sn-glycerol-3-phosphate
1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate
1,2-dimyristoyl-sn-glycerol 3-phosphate
1-palmitoyl-2-myristoyl phosphatidate
dioleoyl phosphatidate
1,2-dicis-vaccenoyl-phosphatidate
1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate
1-palmitoyl-2-cis-vaccenoyl phosphatidate
1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
geranyl diphosphate
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
β-carotene 15,15' epoxide
15,15'-dihydroxy-β-carotene
β-carotene
di-trans,octa-cis-undecaprenyl phosphate
geranylgeranyl diphosphate
all-trans-heptaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-amino-4-imidazolecarboxyamide
chorismate
succinate
fumarate
L-aspartate
3-phenyl-2-oxopropanoate
pyruvate
2-oxobutanoate
2-oxoglutarate
acetate
formate
(R)-lactate
4-hydroxybutanoate
arachidonate
carbamate
L-serine
L-cysteine
L-tyrosine
L-threonine
L-glutamine
L-histidine
L-arginine
L-glutamate
L-methionine
L-leucine
L-proline
L-phenylalanine
L-alanine
D-glutamate
D-alanine
L-isoglutamine
L-cystathionine
L-aspartyl-4-phosphate
L-ornithine
N-carbamoyl-L-aspartate
formyl-L-isoglutamine
N-formimino-L-glutamate
3-phospho-L-serine
trans-4-hydroxy-L-proline
L-citrulline
O-succinyl-L-homoserine
L-homoserine
L-aspartate 4-semialdehyde
O-phospho-L-homoserine
S-adenosyl-L-homocysteine
L-glutamate-5-semialdehyde
S-adenosyl-L-methionine
meso-diaminopimelate
D-alanyl-D-alanine