an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

xanthine

5-amino-6-(D-ribitylamino)uracil

formate

1-deoxy-L-glycero-tetrulose 4-phosphate

shikimate

3-dehydroshikimate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

salicyl alcohol

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

ethanolamine

CDP-glycerol

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

prephenate

thiamine diphosphate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

P¹,P⁴-bis(5'-guanosyl) tetraphosphate

(S)-dihydroorotate

pseudouridine 5'-phosphate

acetyl phosphate

N,N-dimethyl-1,4-phenylenediamine

2-phosphoglycolate

morphinone

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

carbamoyl phosphate

carboxyphosphate

(R)-mevalonate

(R)-5-phosphomevalonate

(R)-mevalonate diphosphate

isopentenyl diphosphate

prenyl diphosphate

glycolate

hydrogen peroxide

oxaloacetate

CO₂

phosphoenolpyruvate

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

glycerone phosphate

N-acetyl-D-muramate 6-phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

arsenite

H₂O

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

1-piperideine 6-carboxylate

glutathione disulfide

pseudouridine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

2-dehydro-3-deoxy-D-gluconate 6-phosphate

quinolinate

urea

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

N-succinyl-L,L-2,6-diaminopimelate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

D-gluconate 6-phosphate

3-carboxy-2,5-dihydro-5-oxofuran-2-acetate

α-D-glucosamine 1-phosphate

(S)-2-amino-6-oxohexanoate

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

lanthionine

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

2-C-methyl-D-erythritol 4-phosphate

muconolactone

(+)-muconolactone

cis,cis-muconate

S-ribosyl-L-homocysteine

autoinducer 2

2-keto-D-gluconate

2,5-didehydro-D-gluconate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

3-dehydroquinate

O-ureido-L-homoserine

L-arginino-succinate

canavaninosuccinate

L-canavanine

DNA without lesion

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

(R)-pantothenate

(R)-4'-phosphopantothenate

propanoyl phosphate

L-selenocystathionine

N⁵-carboxyaminoimidazole ribonucleotide

2-maleylacetate

nicotinate adenine dinucleotide

orotidine 5'-phosphate

3-phosphooxypyruvate

4'-phosphopantetheine

γ-L-glutamyl 5-phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

β-D-fructose 2,6-bisphosphate

6-phospho D-glucono-1,5-lactone

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

1,6-anhydro-N-acetyl-β-muramate

4-(γ-L-glutamylamino)butanoate

4-aminobutanoate

quercitrin

DNA with lesion

L-homocysteine

ethylphosphate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)alamin

adenosylcobalamin

cob(I)inamide

adenosylcobinamide

adenosylcobyrate

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminopropanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

4-dimethylaminophenylazobenzene

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

2-octaprenylphenol

4-nitrophenol

p-nitrophenyl-α-L-rhamnopyranoside

H⁺

ammonium

Mg²⁺

Ca²⁺

Co²⁺

Cu²⁺

hydrogencarbonate

phosphonate

phosphate

triphosphate

diphosphate

chloride

(2E,6E)-farnesyl diphosphate

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

ferrichrome

aniline

2-aminoprop-2-enoate

putrescine

spermidine

S-methyl-L-methionine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

S-trans-1-propenyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-allyl-L-cysteine

methanethiol

glutathione

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

cis-dienelactone

trans-dienelactone

2-methylacetoacetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

acetyl-CoA

malonyl-CoA

3'-dephospho-CoA

succinyl-CoA

crotonyl-CoA

oleoyl-CoA

18-hydroxylinoleoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

propanoyl-CoA

butanoyl-CoA

lauroyl-CoA

myristoyl-CoA

palmitoyl-CoA

cis-vaccenoyl-CoA

palmitoleoyl-CoA

stearoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

tributyrin

1,2-dibutyrin

glycocholate

cholate

riboflavin

nicotinamide

nicotinate

thiamine

all-trans-retinal

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

hypoxanthine

adenylo-succinate

2'-deoxyadenosine

2'-deoxyinosine

GTP

IMP

GMP

XMP

AMP

ATP

ADP

ITP

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

dGTP

dGDP

dATP

dADP

cyclic-AMP

GDP

ppGpp

pppGpp

dAMP

2'-deoxyguanosine

dGMP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

adenosine

inosine

guanosine

xanthosine

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

cyclic di-3',5'-guanylate

5-hydroxy-CTP

5-hydroxy-CMP

dUTP

dTTP

dCTP

CTP

UTP

dUMP

dTMP

dCMP

CMP

UMP

dTDP

dCDP

UDP

CDP

β-nicotinamide D-ribonucleotide

uridine 3'-monophosphate

cytidine-3'-monophosphate

ADP-α-D-glucose

uracil

guanine

adenine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

coenzyme A

(S)-1-pyrroline-5-carboxylate

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

orotate

hesperidin

naringin

hesperitin-7-O-β-D-glucoside

prunin

quercetin

quercetin-3-glucoside

rutin

coumarin

urate

hydroquinone

2,3-dihydroxybenzoate

protocatechuate

coumarinate

4-aminobenzoate

methylglyoxal

acetaldehyde

D-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

β-D-ribopyranose

β-L-rhamnopyranose

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

methanol

ethanol

glycerol

D-mannitol 1-phosphate

myo-inositol

D-ononitol

D-galactosylononitol

galactinol

1-(β-D ribofuranosyl)nicotinamide

XXXG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

a mature peptidoglycan_(n) (meso-DAP containing)

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

arbutin-6-phosphate

α-D-galactose 6-phosphate

salicin 6-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-galactose 6-phosphate

α-D-galactose 1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

methyl β-D-glucoside 6-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1,2-dicis-vaccenoyl-phosphatidate

dioleoyl phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

geranyl diphosphate

trans,octacis-decaprenyl phosphate

β-carotene 15,15' epoxide

15,15'-dihydroxy-β-carotene

β-carotene

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

morphine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

chorismate

(3E)-2-oxohex-3-enedioate

succinate

fumarate

L-aspartate

(S)-malate

3-carboxy-cis,cis-muconate

3-oxoadipate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

glyoxylate

pyruvate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

butanoate

laurate

(S)-lactate

(R)-lactate

sophorosyloxydocosanoate

13-sophorosyloxydocosanoate 6',6''-diacetate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

stearate

palmitate

acetate

carbamate

L-α-amino-ε-keto-pimelate

L-serine

L-tyrosine

L-asparagine

L-glutamine

glycine

L-threonine

L-cysteine

L-histidine

L-arginine

L-lysine

L-glutamate

L-proline

L-valine

L-isoleucine

L-leucine

L-phenylalanine

L-alanine

L-methionine

D-glutamate

D-alanine

D-aspartate

L-aspartyl-4-phosphate

L-cystathionine

L,L-diaminopimelate

L-ornithine

N-carbamoyl-L-aspartate

L-saccharopine

seleno-L-homocysteine

3-phospho-L-serine

S-methyl-L-cysteine

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

O-succinyl-L-homoserine

S-adenosyl-L-methionine

O-phospho-L-homoserine

L-canaline

L-glutamate-5-semialdehyde

L-homoserine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

glycyl-L-glutamine

L-alanyl-L-threonine

L-alanyl-glycine

glycyl-L-methionine

glycyl-L-proline

glycyl-L-glutamate

L-alanyl-L-glutamate

L-alanyl-L-histidine

L-alanyl-L-aspartate

glycyl-L-asparagine

L-cysteinylglycine

L-alanyl-L-leucine

L-alanyl-L-glutamine

glycyl-L-aspartate

L-alanyl-D-glutamate

L-methionyl-L-alanine dipeptide

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine