ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C891

citrate

C11543

H2O

C6444

oxaloacetate

C1431

3-dehydroshikimate

C11653

shikimate

C1208

5-dehydro-D-gluconate

C2191

carbamoyl phosphate

C928

CO2

C10349

glycerone phosphate

C11479

phosphoenolpyruvate

C1231

5-aminolevulinate

C12214

(S)-4-amino-5-oxopentanoate

C12125

imidazole acetol-phosphate

C12390

D-erythro-imidazole-glycerol-phosphate

C12176

histidinol

C12044

L-histidinol phosphate

C996

adenosine 5'-phosphosulfate

C192

adenosine 5'-phosphoselenate

C13635

β-D-ribosylnicotinate

C11857

β-nicotinate D-ribonucleotide

C873

coproporphyrinogen III

C11557

urocanate

C1285

4-imidazolone-5-propanoate

C11826

oxalosuccinate

C12162

hydrogen peroxide

C1130

8-amino-7-oxononanoate

C13950

pimeloyl-CoA

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C12364

isopentenyl diphosphate

C14074

prenyl diphosphate

C13627

DNA without lesion

C12218

α-D-glucosamine 1-phosphate

C11604

thiamine diphosphate

C1552

2-(α-hydroxyethyl)thiamine diphosphate

C3850

5-amino-6-(D-ribitylamino)uracil

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C13196

methyl-1,4-benzoquinol

C13197

2-methyl-1,4-benzoquinone

C2586

(E)-4-coumaroyl-CoA

C1363

(4,5-dihydro-5-oxofuran-2-yl)-acetate

C13689

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

C3344

2-dehydro-3-deoxy-D-gluconate

C1538

2-C-methyl-D-erythritol 4-phosphate

C1550

2-amino-3-carboxymuconate-6-semialdehyde

C1415

3-hydroxyanthranilate

C11483

glycolate

C6361

acetoacetate

C11715

quinolinate

C1078

(S)-2-amino-6-oxohexanoate

C12494

N-acetyl-D-muramate 6-phosphate

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C3888

7-carboxy-7-deazaguanine

C1184

5-phospho-β-D-ribosylamine

C12630

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

C11874

N-succinyl-2-amino-6-ketopimelate

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C11648

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

C2263

4-prenylphlorisobutyrophenone

C12048

γ-L-glutamyl 5-phosphate

C11737

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

C14924

carboxyphosphate

C12230

formamide

C1196

S-methyl-5'-thioadenosine

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C11654

selenophosphate

C1528

2-dehydropantoate

C3262

3-methyl-2-oxobutanoate

C191

L-selenocystathionine

C473

(2-hydroxyphenyl)acetate

C12171

homogentisate

C11767

porphobilinogen

C1283

4-maleyl-acetoacetate

C13854

hydrogen selenide

C3656

D-gluconate 6-phosphate

C1268

(R)-4'-phosphopantothenate

C11800

(R)-pantothenate

C11873

N-succinyl-L,L-2,6-diaminopimelate

C12178

histidinal

C11832

orotidine 5'-phosphate

C12352

(S)-dihydroorotate

C4674

glutathione disulfide

C12492

1,6-anhydro-N-acetyl-β-muramate

C3319

4-methyl-2-oxopentanoate

C11895

N-Formyl-L-kynurenine

C1503

2-dehydro-3-deoxy-D-gluconate 6-phosphate

C11652

shikimate 3-phosphate

C12369

3-dehydroquinate

C4688

glutathioselenol

C4690

selenodiglutathione

C1271

4-oxoglutaramate

C13702

1-piperideine 6-carboxylate

C1024

aminoacetone

C9431

1,2-dihydro-β-NADP

C12274

enol-phenylpyruvate

C1010

ammonia

C6530

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C5032

carbamate

C3526

L-kynurenine

C3536

L-α-amino-ε-keto-pimelate

C5596

L-aspartate

C5607

L-glutamate

C12067

glycine

C5581

L-proline

C5609

L-glutamine

C5573

L-tyrosine

C5588

L-leucine

C5579

L-serine

C5597

L-alanine

C2469

L-phenylalanine

C5577

L-threonine

C5584

L-lysine

C5605

L-histidine

C5575

L-tryptophan

C5583

L-methionine

C12247

L-homocysteine

C12233

L-glutamate-5-semialdehyde

C12231

L-ornithine

C12203

S-adenosyl-L-homocysteine

C12239

L-aspartate 4-semialdehyde

C12245

L-homoserine

C15292

S-adenosyl-L-methionine

C12293

3-sulfino-L-alanine

C12227

O-succinyl-L-homoserine

C2488

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

C5585

meso-diaminopimelate

C12201

L-2-amino-3-oxobutanoate

C12073

L-aspartyl-4-phosphate

C12065

L-saccharopine

C12063

seleno-L-homocysteine

C11955

O-acetyl-L-homoserine

C10821

trans-4-hydroxy-L-proline

C10823

3-hydroxy-L-kynurenine

C5476

formyl-L-isoglutamine

C5466

N-formimino-L-glutamate

C13322

N-carbamoyl-L-aspartate

C5595

L-cystathionine

C5580

L,L-diaminopimelate

C5601

L-isoglutamine

C8797

D-glutamate

C8799

D-alanine

C11441

β-alanine

C11421

protocatechuate

C8974

4-aminobenzoate

C11517

acetate

C11485

D-gluconate

C11487

D-mannonate

C11482

(R)-pantoate

C11481

orotate

C4985

(S)-1-pyrroline-5-carboxylate

C2137

D-tagaturonate

C2021

aldehydo-D-galacturonate

C5935

dinor-12-oxo-phytodienoate

C13300

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

C6185

(R)-lactate

C8185

(S)-2-hydroxyglutarate

C3308

pyruvate

C3421

formate

C3301

2-oxoglutarate

C3351

glyoxylate

C3345

3-phenyl-2-oxopropanoate

C3315

3-(4-hydroxyphenyl)pyruvate

C6371

3-oxoadipate

C8534

cis-aconitate

C8536

3-carboxy-cis,cis-muconate

C8531

D-threo-isocitrate

C8950

chorismate

C6442

succinate

C6443

fumarate

C2802

(S)-malate

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C2258

phlorisovalerophenone

C9304

trans,octacis-decaprenyl phosphate

C9077

(2E,6E)-farnesyl diphosphate

C8321

geranyl diphosphate

C2269

deoxyhumulone

C2261

4-prenylphlorisovalerophenone

C2266

deoxycohumulone

C8322

di-trans,octa-cis-undecaprenyl phosphate

C5378

geranylgeranyl diphosphate

C3676

L-idonate

C4086

1-(β-D ribofuranosyl)nicotinamide

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C1043

GDP-4-dehydro-α-D-rhamnose

C1009

GDP-α-D-mannose

C7189

GDP-β-L-fucose

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C8422

CDP-α-D-glucose

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C1939

dTDP-α-D-glucose

C7722

UDP-α-D-glucuronate

C7780

UDP-α-D-glucose

C8562

UDP-β-L-threo-pentapyranos-4-ulose

C5126

UDP-4-amino-4-deoxy-β-L-arabinopyranose

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7822

UDP-N-acetyl-α-D-muramate

C7444

UDP-N-acetyl-α-D-glucosamine

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C10338

5-phospho-α-D-ribose 1-diphosphate

C10340

D-erythrose 4-phosphate

C15289

D-sedoheptulose 7-phosphate

C8811

α-D-glucopyranose 1-phosphate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C2989

β-D-fructofuranose 6-phosphate

C15303

D-fructose 6-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C8704

D-xylulose 5-phosphate

C8700

aldehydo-D-arabinose 5-phosphate

C10604

D-ribulose 5-phosphate

C5615

D-glyceraldehyde 3-phosphate

C6651

mannosylfructose-phosphate

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C13222

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

C13226

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

C8835

β-D-fructofuranose

C2109

α-D-galactopyranose

C2108

β-D-galactopyranose

C9494

D-glyceraldehyde

C2012

keto-D-fructose

C5458

keto-L-sorbose

C2143

D-xylulose

C15288

N-acetylmuramate

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C5286

N-acetyl-β-D-glucosamine

C6569

D-sorbitol

C6571

L-iditol

C10527

myo-inositol

C13576

1D-myo-inositol 1-monophosphate

C13573

1D-myo-inositol 3-monophosphate

C3450

ethanol

C3448

methanol

C6090

methylglyoxal

C3500

acetaldehyde

C3483

formaldehyde

C15317

2',4,4',6'-tetrahydroxychalcone

C10048

caldariellaquinone

C10567

myricetin

C11661

(+)-taxifolin

C4356

quercetin

C9897

kaempferol

C11655

(+)-dihydromyricetin

C11659

(+)-dihydrokaempferol

C1869

caldariellaquinol

C1863

demethylmenaquinol-8

C1680

menaquinol-8

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C9454

adenine

C7811

XMP

C7741

IMP

C7809

AMP

C7827

GMP

C7844

ATP

C7745

GTP

C7759

ITP

C7757

ADP

C7795

GDP

C7817

IDP

C7807

dGDP

C7747

dIDP

C7823

dADP

C7751

dGTP

C7749

dITP

C7783

dATP

C7840

dGMP

C7743

dAMP

C15094

xanthosine

C15085

guanosine

C15091

inosine

C15088

adenosine

C7848

2'-deoxyguanosine

C7813

2'-deoxyadenosine

C5590

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

C5578

6-carboxy-5,6,7,8-tetrahydropterin

C14603

tetrahydromethanopterin

C12730

7,8-dihydroneopterin 3'-triphosphate

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C10609

7,8-dihydropteroate

C14624

5,10-methylene-tetrahydromethanopterin

C10597

7,8-dihydrofolate monoglutamate

C10049

FMNH2

C10050

FADH2

C10052

FMN

C10053

FAD

C10988

riboflavin

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C9540

preQ1

C7649

isoguanine

C8744

dTMP

C8770

dUMP

C8724

dUTP

C8752

dUDP

C8761

CTP

C8732

CDP

C8772

dCTP

C8733

dCDP

C8760

UTP

C8714

UDP

C8764

dTTP

C8720

dTDP

C8755

dCMP

C2241

UMP

C2245

CMP

C2706

uridine

C2702

cytidine

C2523

2'-deoxycytidine

C2527

2'-deoxyuridine

C2519

thymidine

C2311

precorrin-2

C2305

precorrin-1

C10614

coenzyme A

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C10288

adenylo-succinate

C7655

8-oxo-GTP

C7647

8-oxo-dGTP

C9443

2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA

C9444

2-sulfanyl-N6-dimethylallyladenosine37 in tRNA

C4243

β-nicotinamide D-ribonucleotide

C10290

5-hydroxy-CTP

C10284

2-hydroxy-dATP

C4020

NAD+

C4018

NADP+

C14500

NADH

C14497

NADPH

C5392

(S)-NADHX

C5394

(R)-NADHX

C4210

pyridoxal 5'-phosphate

C4214

pyridoxine 5'-phosphate

C4188

pyridoxamine 5'-phosphate

C5298

acetyl-CoA

C4901

succinyl-CoA

C5314

2-methylacetoacetyl-CoA

C4913

malonyl-CoA

C4937

3'-dephospho-CoA

C5014

phenylacetyl-CoA

C5306

3-methylcrotonyl-CoA

C4920

isovaleryl-CoA

C4899

3-methylglutaconyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C2009

3-oxopentanoyl-CoA

C2008

acetoacetyl-CoA

C1177

propanoyl-CoA

C10775

(S)-3-hydroxybutanoyl-CoA

C7343

(S)-malyl-CoA

C5920

(R)-methylmalonyl-CoA

C5919

(S)-methylmalonyl-CoA

C4606

S-(hydroxymethyl)glutathione

C4678

glutathione

C4580

(R)-S-lactoylglutathione

C7994

(2R)-phospho-3-sulfolactate

C12637

3-sulfopyruvate

C12587

L-cysteate

C2209

(2R)-3-sulfolactate

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C3998

methanethiol

C3574

spermidine

C3548

putrescine

C6524

2-aminoprop-2-enoate

C6708

2-iminopropanoate

C8958

superoxide

C8965

hydroxyl radical

C7036

hydrogencarbonate

C7020

selenate

C7016

sulfite

C7022

selenide

C7025

OH-

C7017

selenite

C7034

hydrogensulfite

C7014

sulfate

C7006

chloride

C6762

phosphonate

C6097

phosphate

C6093

diphosphate

C6094

triphosphate

C7864

Fe3+

C11009

Mg2+

C11023

Fe2+

C4320

H+

C4328

ammonium

C11281

2-chloroacetate

C13354

preQ0

C6644

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

C6437

3-phospho-D-glyceroyl-phosphate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C8419

sn-glycerol 3-phosphate

C8420

sn-glycerol 1-phosphate

C6596

2-iminosuccinate

C7118

hydrogen sulfide

C7121

oxygen

C7658

uroporphyrinogen-III

C7672

coproporphyrinogen I

C7662

uroporphyrinogen-I

C9865

Mg-protoporphyrin

C7676

protoporphyrin IX

C803

ethylphosphate

C10799

DNA with lesion