an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

salicyl alcohol

glycolate

xanthine

S-ribosyl-L-homocysteine

autoinducer 2

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

5-enolpyruvoyl-shikimate 3-phosphate

H₂O

CO₂

coproporphyrinogen III

orotidine 5'-phosphate

L-selenocystathionine

α-D-glucosamine 1-phosphate

oxaloacetate

(S)-dihydroorotate

shikimate 3-phosphate

5-dehydro-D-gluconate

3-deoxy-D-glycero-2,5-hexodiulosonate

dihydroxyacetone

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

DNA without lesion

ethanolamine

hydrogenobyrinate a,c-diamide

porphobilinogen

5-aminolevulinate

2-amino-2-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

luteolin 7-O-β-D-glucuronide

luteolin 7-O-β-D-diglucuronide

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

lanthionine

hydrogen peroxide

D-galactosamine-6-phosphate

glycerone phosphate

(R)-mevalonate diphosphate

(R)-5-phosphomevalonate

(R)-mevalonate

N-acetyl-D-galactosamine 6-phosphate

isopentenyl diphosphate

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

2,3-didehydroadipyl-CoA

(lipoyl)adenylate

O-ureido-L-homoserine

citrate

glutathione disulfide

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

(R)-4'-phosphopantothenate

(R)-pantothenate

hydrogenobyrinate

O-acetyl-L-serine

phosphoenolpyruvate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

propanoyl phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

3-keto-L-gulonate 6-phosphate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

carbamoyl phosphate

4-guanidinobutanoate

4-guanidinobutyramide

acrylate

acrylamide

(indol-3-yl)acetamide

propionamide

D-gluconate 6-phosphate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

L-arginino-succinate

urea

2,5-didehydro-D-gluconate

2-keto-D-gluconate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

carboxyphosphate

quinolinate

prenyl diphosphate

3-dehydroshikimate

shikimate

3-phosphooxypyruvate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

2-keto-L-gulonate

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

D-alanyl-D-alanine

carbamate

L-citrulline

L-threonine

L-valine

L-glutamate

L-alanine

L-leucine

L-isoleucine

L-aspartate

L-serine

glycine

L-asparagine

L-lysine

L-arginine

L-phenylalanine

L-tyrosine

L-glutamine

L-cysteine

L-methionine

L-homoserine

L-homocysteine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

L-canaline

L-ornithine

S-adenosyl-L-homocysteine

O-phospho-L-homoserine

O-succinyl-L-homoserine

meso-diaminopimelate

L-aspartyl-4-phosphate

seleno-L-homocysteine

N-carbamoyl-L-aspartate

S-methyl-L-cysteine

3-phospho-L-serine

S-trans-1-propenyl-L-cysteine

S-allyl-L-cysteine

L-cystathionine

D-glutamate

D-alanine

protocatechuate

2,3-dihydroxybenzoate

4-aminobenzoate

acetate

orotate

D-gluconate

D-mannonate

4-deoxy-L-threo-hex-4-enopyranuronate

β-D-glucuronate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

(R)-lactate

(R)-glycerate

pyruvate

formate

propanoate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

2-oxoglutarate

3-phenyl-2-oxopropanoate

3-oxoadipate

3-carboxy-cis,cis-muconate

chorismate

(3E)-2-oxohex-3-enedioate

succinate

fumarate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

acetamide

(2E,6E)-farnesyl diphosphate

ferrichrome

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

L-idonate

5-dehydro-4-deoxy-D-glucuronate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

arbutin-6-phosphate

methyl β-D-glucoside 6-phosphate

salicin 6-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-tagatofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

aldehydo-D-allose 6-phosphate

D-fructose 6-phosphate

keto-L-tagatose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-xylulose 5-phosphate

D-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

D-allulose 6-phosphate

D-glyceraldehyde 3-phosphate

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

β-L-rhamnopyranose

α-L-rhamnopyranose

β-D-fructofuranose

α-D-galactopyranose

β-D-galactopyranose

D-glyceraldehyde

keto-L-rhamnulose

N-acetyl-β-D-mannosamine

N-acetyl-α-D-galactosamine

N-acetyl-β-neuraminate

glycerol

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

sucrose

maltotetraose

maltohexaose

maltoheptaose

maltotriose

maltopentaose

unsaturated gellan tetrasaccharide

β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-D-Glcp

hydroquinone

methanol

methylglyoxal

(S)-lactaldehyde

acetaldehyde

luteolin

guanine

adenine

GMP

AMP

IMP

XMP

ITP

ATP

GTP

IDP

ADP

GDP

dIDP

dGDP

dADP

dATP

dITP

dGTP

dGMP

dAMP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

reduced riboflavin

FMNH₂

riboflavin

FMN

uracil

thymine

preQ₁

isoguanine

dTTP

CTP

dCMP

UTP

dTDP

dCTP

CDP

dCDP

UDP

dUDP

dUMP

dUTP

dTMP

UMP

CMP

uridine

cytidine

thymidine

2'-deoxyuridine

2'-deoxycytidine

cob(I)alamin

adenosylcobalamin

cobyrinate

sirohydrochlorin

cobalt-precorrin-6A

cobalt-precorrin-5B

cobalt-precorrin-5A

cobalt-precorrin-4

precorrin-6A

precorrin-6B

precorrin-8x

cobalt-precorrin-3

cobalt-precorrin-2

precorrin-2

precorrin-1

cobalt-precorrin-6B

cobalt-precorrin-8

cobalt-precorrin-7

coenzyme A

(R)-lipoate

ppGpp

pppGpp

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5'-deoxyadenosine

adenylo-succinate

8-oxo-GTP

8-oxo-dGTP

5-hydroxy-CTP

2-hydroxy-dATP

NADP⁺

NAD⁺

NADPH

NADH

5'-deoxy-5'-fluoroadenosine

glycine betaine

(S)-NADHX

(R)-NADHX

nicotinate

(indol-3-yl)acetate

3'-dephospho-CoA

acetyl-CoA

2-methylacetoacetyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

(E)-2-methylcrotonoyl-CoA

3-hydroxyisovaleryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

malonyl-CoA

2-methylbutanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

succinyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

crotonyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(7Z,10Z,13Z,16Z)-3-oxodocosatetraenoyl-CoA

(3R,7Z,10Z,13Z,16Z)-3-hydroxydocosatetraenoyl-CoA

(9Z,12Z,15Z,18Z,21Z)-3-oxotetracosapentaenoyl-CoA

(3R,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosapentaenoyl-CoA

(9Z,12Z,15Z,18Z)-3-oxotetracosatetraenoyl-CoA

(3R,9Z,12Z,15Z,18Z)-3-hydroxytetracosatetraenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

propanoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-[(S)-allyl]-L-cysteine

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

S-sulfanylglutathione

spermidine

putrescine

2-aminoprop-2-enoate

2-iminopropanoate

superoxide

hydroxyl radical

hydrogencarbonate

OH^-

chloride

phosphonate

phosphate

diphosphate

triphosphate

Fe³⁺

Fe²⁺

Co²⁺

Zn²⁺

Mn²⁺

Ni²⁺

H⁺

ammonium

2-chloroacetate

preQ₀

N-acetyl-D-mannosamine 6-phosphate

α-D-glucosamine 6-phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminosuccinate

oxygen

hydrogen sulfide

protoporphyrinogen IX

uroporphyrinogen-III

protoporphyrin IX

protoheme

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

adenosylcobyrate

adenosyl-cob(III)yrinate a,c-diamide

cobalt-factor III

cobalt-sirohydrochlorin

DNA with lesion