ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C1231

5-aminolevulinate

C12214

(S)-4-amino-5-oxopentanoate

C3684

3-deoxy-α-D-manno-2-octulosonate

C12074

3-deoxy-D-manno-octulosonate 8-phosphate

C11543

H2O

C11479

phosphoenolpyruvate

C6444

oxaloacetate

C11634

tartronate semialdehyde

C1198

5-dehydro-4-deoxy-D-glucarate

C10349

glycerone phosphate

C928

CO2

C3259

2-oxovalerate

C506

3-ethylmalate

C3319

4-methyl-2-oxopentanoate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C1530

(2R,3S)-3-isopropylmalate

C2191

carbamoyl phosphate

C6359

(S)-2-acetolactate

C6369

(S)-2-aceto-2-hydroxybutanoate

C3656

D-gluconate 6-phosphate

C1431

3-dehydroshikimate

C12369

3-dehydroquinate

C1184

5-phospho-β-D-ribosylamine

C14924

carboxyphosphate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C933

L-canavanine

C932

canavaninosuccinate

C12056

L-arginino-succinate

C11930

N-acetylglutamyl-phosphate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C12164

H2

C13417

2-isopropylmaleate

C1438

(2S)-2-isopropylmalate

C1268

(R)-4'-phosphopantothenate

C11800

(R)-pantothenate

C11767

porphobilinogen

C12374

3-dehydro-2-deoxy-D-gluconate

C12375

2-deoxygluconate

C11729

quercitrin

C15056

salicyl alcohol

C192

adenosine 5'-phosphoselenate

C996

adenosine 5'-phosphosulfate

C232

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

C13928

urea-1-carboxylate

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C15202

2-amino-2-deoxy-D-gluconate 6-phosphate

C13909

CDP-glycerol

C13627

DNA without lesion

C11483

glycolate

C13196

methyl-1,4-benzoquinol

C13197

2-methyl-1,4-benzoquinone

C12352

(S)-dihydroorotate

C12162

hydrogen peroxide

C6614

O-ureido-L-homoserine

C11857

β-nicotinate D-ribonucleotide

C1454

2,5-didehydro-D-gluconate

C3295

2-keto-D-gluconate

C3850

5-amino-6-(D-ribitylamino)uracil

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C10274

5-amino-6-(5-phospho-D-ribosylamino)uracil

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C12364

isopentenyl diphosphate

C14074

prenyl diphosphate

C11606

thiamine phosphate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C927

carbon monoxide

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C873

coproporphyrinogen III

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C12848

N5-carboxyaminoimidazole ribonucleotide

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C12176

histidinol

C12178

histidinal

C12390

D-erythro-imidazole-glycerol-phosphate

C14216

3-keto-L-gulonate 6-phosphate

C3344

2-dehydro-3-deoxy-D-gluconate

C7349

chloramphenicol

C6349

3-oxopropanoate

C1353

3-phosphooxypyruvate

C1548

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

C1631

3-amino-1-hydroxyacetone 1-phosphate

C1265

4-phosphooxy-L-threonine

C13850

hydrogenobyrinate a,c-diamide

C1196

S-methyl-5'-thioadenosine

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C638

5-(methylsulfanyl)-ribulose 1-phosphate

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C11737

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

C8191

5-dehydro-2-deoxy-D-gluconate 6-phosphate

C8210

5-dehydro-2-deoxy-D-gluconate

C12044

L-histidinol phosphate

C11832

orotidine 5'-phosphate

C3262

3-methyl-2-oxobutanoate

C3417

(S)-3-methyl-2-oxopentanoate

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C11748

pseudouridine 5'-phosphate

C11557

urocanate

C1285

4-imidazolone-5-propanoate

C3314

2-dehydro-3-deoxy-D-galactonate

C1363

(4,5-dihydro-5-oxofuran-2-yl)-acetate

C13689

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

C12407

crotonate

C191

L-selenocystathionine

C12370

2-dehydro-3-deoxy-D-galactonate 6-phosphate

C6361

acetoacetate

C1102

O-acetyl-L-serine

C1538

2-C-methyl-D-erythritol 4-phosphate

C12254

ethanolamine

C13854

hydrogen selenide

C1528

2-dehydropantoate

C11604

thiamine diphosphate

C7865

urea

C13986

pseudouridine

C12125

imidazole acetol-phosphate

C13851

hydrogenobyrinate

C1503

2-dehydro-3-deoxy-D-gluconate 6-phosphate

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C4674

glutathione disulfide

C4688

glutathioselenol

C4690

selenodiglutathione

C3253

2,5-dioxopentanoate

C9431

1,2-dihydro-β-NADP

C12274

enol-phenylpyruvate

C1010

ammonia

C7666

protoporphyrinogen IX

C7658

uroporphyrinogen-III

C7676

protoporphyrin IX

C6624

protoheme

C9828

cob(II)yrinate a,c-diamide

C9871

cobalt-precorrin-5A

C9847

cobalt-precorrin-4

C12247

L-homocysteine

C10799

DNA with lesion

C6530

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C5032

carbamate

C12303

L-citrulline

C5583

L-methionine

C5575

L-tryptophan

C5607

L-glutamate

C5596

L-aspartate

C2469

L-phenylalanine

C12067

glycine

C5609

L-glutamine

C5577

L-threonine

C5579

L-serine

C5571

L-valine

C5642

L-arginine

C5584

L-lysine

C5597

L-alanine

C5603

L-isoleucine

C5588

L-leucine

C5581

L-proline

C5605

L-histidine

C5573

L-tyrosine

C5612

L-cysteine

C12231

L-ornithine

C12239

L-aspartate 4-semialdehyde

C15292

S-adenosyl-L-methionine

C12203

S-adenosyl-L-homocysteine

C12229

O-phospho-L-homoserine

C12237

L-canaline

C12227

O-succinyl-L-homoserine

C12245

L-homoserine

C12233

L-glutamate-5-semialdehyde

C5585

meso-diaminopimelate

C12073

L-aspartyl-4-phosphate

C12063

seleno-L-homocysteine

C11955

O-acetyl-L-homoserine

C10821

trans-4-hydroxy-L-proline

C15000

N-acetyl-L-ornithine

C14973

N-acetyl-L-glutamate

C14976

N-acetyl-L-methionine

C13322

N-carbamoyl-L-aspartate

C3402

3-phospho-L-serine

C5595

L-cystathionine

C11441

β-alanine

C11421

protocatechuate

C8974

4-aminobenzoate

C11517

acetate

C11487

D-mannonate

C11481

orotate

C11510

5-chloro-5-deoxy-D-ribonate

C11482

(R)-pantoate

C11503

5-deoxy-D-glucuronate

C4985

(S)-1-pyrroline-5-carboxylate

C3743

4-deoxy-L-threo-hex-4-enopyranuronate

C3418

butanoate

C3383

palmitate

C11476

(R)-glycerate

C3308

pyruvate

C3421

formate

C3420

propanoate

C3257

2-oxobutanoate

C3301

2-oxoglutarate

C3337

5-chloro-4-hydroxy-2-oxopentanoate

C3345

3-phenyl-2-oxopropanoate

C6371

3-oxoadipate

C8536

3-carboxy-cis,cis-muconate

C3316

(3E)-2-oxohex-3-enedioate

C8919

D-glucarate

C6443

fumarate

C6442

succinate

C2802

(S)-malate

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C9075

mono-trans,octa-cis-decaprenyl diphosphate

C2930

ferrichrome

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C3682

D-galactonate

C4068

5-dehydro-4-deoxy-D-glucuronate

C8433

CDP-4-dehydro-6-deoxy-α-D-glucose

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C10263

ADP-α-D-glucose

C1009

GDP-α-D-mannose

C8422

CDP-α-D-glucose

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C1896

dTDP-4-dehydro-β-L-rhamnose

C1930

dTDP-β-L-rhamnose

C1939

dTDP-α-D-glucose

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7780

UDP-α-D-glucose

C8666

UDP-α-D-galactose

C7444

UDP-N-acetyl-α-D-glucosamine

C6744

CMP-N-acetyl-β-neuraminate

C10334

arbutin-6-phosphate

C8669

methyl β-D-glucoside 6-phosphate

C10331

salicin 6-phosphate

C13712

p-nitrophenyl-α-L-rhamnopyranoside

C10338

5-phospho-α-D-ribose 1-diphosphate

C10340

D-erythrose 4-phosphate

C15289

D-sedoheptulose 7-phosphate

C10342

D-sedoheptulose 1,7-bisphosphate

C8817

L-rhamnulose 1-phosphate

C8811

α-D-glucopyranose 1-phosphate

C8813

α-D-mannose 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2115

α-D-galactose 6-phosphate

C2116

β-D-galactose 6-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C2989

β-D-fructofuranose 6-phosphate

C10323

D-tagatofuranose 6-phosphate

C15303

D-fructose 6-phosphate

C10325

L-ascorbate 6-phosphate

C10328

keto-L-tagatose 6-phosphate

C10324

D-tagatofuranose 1,6-bisphosphate

C2123

β-D-glucose 6-phosphate

C2125

α-D-glucose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C6719

β-D-mannopyranose 6-phosphate

C15351

erythrulose 1-phosphate

C2057

α-D-ribose-1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C8704

D-xylulose 5-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C8701

L-xylulose 5-phosphate

C8699

D-arabinofuranose 5-phosphate

C10607

L-ribulose 5-phosphate

C10604

D-ribulose 5-phosphate

C5615

D-glyceraldehyde 3-phosphate

C6669

N-monoacetylchitobiose 6'-phosphate

C6671

N,N'-diacetylchitobiose 6'-phosphate

C973

D-ribulose-1,5-bisphosphate

C10370

a peptidoglycan dimer (E. faecium, tetrapeptide)

C10379

a peptidoglycan dimer (E. faeciums)

C10372

a peptidoglycan dimer (S. aureus)

C10381

a peptidoglycan dimer (mycobacteria)

C10374

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C3130

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

C3127

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

C3132

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine

C13222

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

C13226

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

C6133

β-L-rhamnopyranose

C6134

α-L-rhamnopyranose

C8835

β-D-fructofuranose

C2109

α-D-galactopyranose

C9494

D-glyceraldehyde

C2012

keto-D-fructose

C7089

keto-L-rhamnulose

C2143

D-xylulose

C7173

L-ribulose

C15288

N-acetylmuramate

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C14474

N-acetyl-α-D-mannosamine

C14477

N-acetyl-α-D-galactosamine

C4960

N-acetyl-β-neuraminate

C3731

glycerol

C3672

D-sorbitol 6-phosphate

C3671

galactitol 1-phosphate

C10693

sucrose

C10708

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

C10689

maltotetraose

C10691

maltohexaose

C10692

maltoheptaose

C10688

maltotriose

C10690

maltopentaose

C6899

stachyose

C6591

unsaturated gellan tetrasaccharide

C5727

raffinose

C5698

β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-D-Glcp

C2903

hydroquinone

C10519

1-keto-D-chiro-inositol

C10522

scyllo-inosose

C10525

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

C3450

ethanol

C3448

methanol

C6090

methylglyoxal

C6246

(S)-lactaldehyde

C3500

acetaldehyde

C3483

formaldehyde

C10143

menadione

C10048

caldariellaquinone

C2040

diacetyl

C4356

quercetin

C618

quercetin-3-glucoside

C603

rutin

C11321

hesperidin

C319

hesperitin-7-O-β-D-glucoside

C321

prunin

C570

naringin

C2915

menadiol

C1869

caldariellaquinol

C12862

4-nitrophenol

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C9454

adenine

C7809

AMP

C7741

IMP

C7811

XMP

C7827

GMP

C7844

ATP

C7745

GTP

C7759

ITP

C7757

ADP

C7795

GDP

C7817

IDP

C7823

dADP

C7807

dGDP

C7747

dIDP

C7783

dATP

C7751

dGTP

C7749

dITP

C15088

adenosine

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C10609

7,8-dihydropteroate

C10597

7,8-dihydrofolate monoglutamate

C7134

tetrahydropteroyl tri-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C15044

reduced riboflavin

C10049

FMNH2

C10988

riboflavin

C10052

FMN

C10053

FAD

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C8739

uracil

C10601

thymine

C9540

preQ1

C7649

isoguanine

C8714

UDP

C8760

UTP

C8724

dUTP

C8761

CTP

C8772

dCTP

C8733

dCDP

C8755

dCMP

C8732

CDP

C8752

dUDP

C8764

dTTP

C8720

dTDP

C8770

dUMP

C8744

dTMP

C2241

UMP

C2245

CMP

C2706

uridine

C2702

cytidine

C2519

thymidine

C2527

2'-deoxyuridine

C2523

2'-deoxycytidine

C2320

precorrin-4

C2314

precorrin-3B

C2302

precorrin-3A

C2311

precorrin-2

C2305

precorrin-1

C2300

precorrin-5

C2308

precorrin-6A

C2317

precorrin-6B

C2297

precorrin-8x

C2323

precorrin-7

C10614

coenzyme A

C10288

adenylo-succinate

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C5552

5'-deoxyadenosine

C10267

pppGpp

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C10266

ppGpp

C7655

8-oxo-GTP

C7647

8-oxo-dGTP

C9443

2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA

C9444

2-sulfanyl-N6-dimethylallyladenosine37 in tRNA

C10290

5-hydroxy-CTP

C10284

2-hydroxy-dATP

C1817

cyclic di-3',5'-guanylate

C4020

NAD+

C4018

NADP+

C14500

NADH

C14497

NADPH

C11516

glycine betaine

C5392

(S)-NADHX

C5394

(R)-NADHX

C10994

thiamine

C10982

nicotinate

C4913

malonyl-CoA

C5298

acetyl-CoA

C4901

succinyl-CoA

C5061

(2R)-ethylmalonyl-CoA

C4953

(2S)-ethylmalonyl-CoA

C4927

(E)-glutaconyl-CoA

C4937

3'-dephospho-CoA

C2008

acetoacetyl-CoA

C5892

palmitoyl-CoA

C1177

propanoyl-CoA

C1175

butanoyl-CoA

C1337

crotonyl-CoA

C5920

(R)-methylmalonyl-CoA

C5919

(S)-methylmalonyl-CoA

C4606

S-(hydroxymethyl)glutathione

C4678

glutathione

C12637

3-sulfopyruvate

C12587

L-cysteate

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C3998

methanethiol

C2179

choline

C3548

putrescine

C3564

spermine

C3574

spermidine

C6526

(2Z)-2-aminobut-2-enoate

C6524

2-aminoprop-2-enoate

C6708

2-iminopropanoate

C8958

superoxide

C8965

hydroxyl radical

C7057

molybdate

C7036

hydrogencarbonate

C7020

selenate

C7025

OH-

C7017

selenite

C7014

sulfate

C7006

chloride

C6097

phosphate

C6093

diphosphate

C7864

Fe3+

C10999

Cd2+

C11006

Co2+

C11023

Fe2+

C4328

ammonium

C4320

H+

C4318

K+

C11281

2-chloroacetate

C13088

chloramphenicol 3-acetate

C13354

preQ0

C6741

(S)-methylmalonate-semialdehyde

C2017

α-D-glucosamine 6-phosphate

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C6437

3-phospho-D-glyceroyl-phosphate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C8419

sn-glycerol 3-phosphate

C6599

2-iminobutanoate

C7118

hydrogen sulfide

C7121

oxygen