an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

5-phospho-β-D-ribosylamine

lipid IV_A

lipid A disaccharide (E. coli)

3-deoxy-α-D-manno-2-octulosonate

(R)-4'-phosphopantothenate

(R)-pantothenate

CO₂

3-dehydroshikimate

3-dehydroquinate

citrate

N-acetyl-L-glutamate 5-semialdehyde

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

phosphoenolpyruvate

β-nicotinate D-ribonucleotide

N-acetylglutamyl-phosphate

N-succinyl-L,L-2,6-diaminopimelate

2-oxopent-4-enoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

4'-phosphopantetheine

(R)-4'-phosphopantothenoyl-L-cysteine

shikimate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

4-hydroxy-2-nonenal

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

orotidine 5'-phosphate

DNA without lesion

oxaloacetate

carboxyphosphate

carbamoyl phosphate

pyrazine-2-carboxylate

prenyl diphosphate

(S)-2-acetolactate

3-amino-1-hydroxyacetone 1-phosphate

(S)-2-aceto-2-hydroxybutanoate

4-methyl-2-oxopentanoate

4-methylsalicylate

5-methylsalicylate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

(4-hydroxyphenyl)acetate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(S)-dihydroorotate

5-amino-6-(D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

urocanate

nicotinate adenine dinucleotide

3-deoxy-D-arabino-heptulosonate 7-phosphate

glutathione disulfide

lipid X

3-deoxy-D-manno-octulosonate 8-phosphate

glycerone phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

4-phosphooxy-L-threonine

4-amino-4-deoxychorismate

2-dehydropantoate

hydrogen peroxide

2-iminoacetate

ethylamine

N-ethylglycine

methylamine

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

glycolate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

isopentenyl diphosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

ethanolamine

γ-L-glutamyl 5-phosphate

5-hydroxyindole acetate

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

propynoate

prop-2-ynal

palmitaldehyde

dimethylsulfoniopropanoate

4-imidazoleacetate

imidazole acetaldehyde

D-glucurono-6,3-lactone

3,4-dihydroxyphenylacetaldehyde

(2E)-hexadecenal

4-acetamidobutanoate

4-acetamidobutanal

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-phosphooxypyruvate

creatinine

(S)-2-amino-6-oxohexanoate

norspermidine

carboxynorspermidine

carbonic acid

thiamine diphosphate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

α-D-glucosamine 1-phosphate

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

N⁵-carboxyaminoimidazole ribonucleotide

urea

quinolinate

L-arginino-succinate

2-maleylacetate

protoanemonin

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

1-piperideine 6-carboxylate

1,2-dihydro-β-NADP

enol-phenylpyruvate

ammonia

(2E)-2-hydroxypenta-2,4-dienoate

(3E)-2-oxopent-3-enoate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-chloroacetate

2-iminobutanoate

2-iminopropanoate

2-iminosuccinate

oxygen

Mg-protoporphyrin

protoporphyrin IX

protoporphyrinogen IX

hemin

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

carbamate

L-citrulline

L-methionine

L-glutamine

L-glutamate

L-isoleucine

glycine

L-phenylalanine

L-lysine

L-alanine

L-proline

L-aspartate

L-histidine

L-threonine

L-valine

L-leucine

L-arginine

L-tyrosine

L-serine

L-cysteine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-homoserine

L-ornithine

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-aspartyl-4-phosphate

L-saccharopine

trans-4-hydroxy-L-proline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-acetyl-L-methionine

sarcosine

N-carbamoyl-L-aspartate

3-phospho-L-serine

L,L-diaminopimelate

D-alanine

D-glutamate

creatine

β-alanine

salicylate

4-aminobenzoate

benzoate

acetate

5-chloro-5-deoxy-D-ribonate

(R)-pantoate

orotate

(S)-1-pyrroline-5-carboxylate

4-deoxy-L-threo-hex-4-enopyranuronate

laurate

palmitate

decanoate

octanoate

stearate

phytenate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

(2E)-hexadecenoate

pyruvate

formate

2-oxoglutarate

5-chloro-4-hydroxy-2-oxopentanoate

2-oxobutanoate

glyoxylate

3-phenyl-2-oxopropanoate

3-oxoadipate

cis-aconitate

D-threo-isocitrate

chorismate

D-glucarate

fumarate

succinate

(S)-malate

pyrazinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

salicylaldehyde

α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

geranyl diphosphate

anguibactin

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

5-dehydro-4-deoxy-D-glucuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

4-phospho-D-erythronate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

glycerol

4-deoxy-2-O-sulfo-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate

4-deoxy-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate

4-chlorocatechol

4-methylcatechol

catechol

3,4-dihydroxyphenylacetate

3,4-dihydroxymandelate

3,4-dihydroxyphenylglycolaldehyde

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

benzaldehyde

phytenal

dodecanal

decanal

acetaldehyde

1-octanal

formaldehyde

menadione

caldariellaquinone

diacetyl

4-hydroxybenzoate

menadiol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

caldariellaquinol

3-demethylubiquinol-8

demethylmenaquinol-8

menaquinol-8

ubiquinol-8

5-chlorosalicylate

4-chlorosalicylate

(indol-3-yl)acetaldehyde

vanillyl mandelate

AMP

GMP

XMP

IMP

ATP

GTP

ITP

GDP

ADP

IDP

dGDP

dADP

dIDP

dGTP

dATP

dITP

2'-deoxyguanosine

tetrahydromethanopterin

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

5,10-methylene-tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

FADH₂

FAD

riboflavin

FMN

6,7-dimethyl-8-(1-D-ribityl)lumazine

CDP

dCDP

UDP

dUDP

dUTP

dCTP

dUMP

dCMP

CTP

dTMP

UTP

dTDP

dTTP

CMP

UMP

coenzyme A

adenylo-succinate

ppGpp

pppGpp

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

NAD⁺

NADP⁺

NADH

NADPH

(S)-NADHX

(R)-NADHX

nicotinate

biotin

thiamine

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

(indol-3-yl)acetate

(+)-7-epi-jasmonate

acetyl-CoA

malonyl-CoA

3'-dephospho-CoA

succinyl-CoA

(+)-7-epi-jasmonoyl-CoA

dihomo γ-linolenoyl-CoA

oleoyl-CoA

hexadecanedioyl-CoA

stearoyl-CoA

palmitoyl-CoA

18-hydroxyoleoyl-CoA

lauroyl-CoA

cis-dienelactone

3-dimethylsulfoniopropionaldehyde

S-(hydroxymethyl)glutathione

glutathione

3-sulfopyruvate

L-cysteate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

putrescine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

Fe³⁺

Mg²⁺

ammonium

H⁺

hydrogencarbonate

sulfate

chloride

phosphate

diphosphate

triphosphate

3-chloro-cis,cis-muconate

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

3-(all-trans-octaprenyl)benzene-1,2-diol