an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

ammonia

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

quinolinate

selenodiglutathione

glutathioselenol

N-succinyl-L,L-2,6-diaminopimelate

hydrogen selenide

glutathione disulfide

(R)-4'-phosphopantothenate

acetoacetate

(R)-mevalonate

(R)-5-phosphomevalonate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

autoinducer 2

1,4-dihydroxy-2-naphthoate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(R)-pantothenate

acetyl phosphate

5-aminolevulinate

xanthine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

phthalate

2,2'-disulfonyl azobenzene

3-[(4-amino-6-chloro-1,3,5-triazin-2-yl)amino]benzenesulfonate

β-D-ribosylnicotinate

shikimate

5-phospho-β-D-ribosylamine

L-arginino-succinate

canavaninosuccinate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

O-acetyl-L-serine

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

adenosine 5'-phosphoselenate

(R)-mevalonate diphosphate

isopentenyl diphosphate

3-dehydroshikimate

shikimate 3-phosphate

coproporphyrinogen III

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinylbenzoate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

S-ribosyl-L-homocysteine

carboxyphosphate

lipid IV_A

carbamoyl phosphate

lipid X

lipid A disaccharide (E. coli)

phosphoenolpyruvate

glycerone phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

1-deoxy-L-glycero-tetrulose 4-phosphate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

hydrogen peroxide

2-(α-hydroxyethyl)thiamine diphosphate

α-D-glucosamine 1-phosphate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

thiamine phosphate

thiamine diphosphate

isochorismate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

pimeloyl-CoA

8-amino-7-oxononanoate

L-canavanine

prenyl diphosphate

(S)-4-amino-5-oxopentanoate

2-dehydropantoate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-phosphooxypyruvate

7,8-diaminopelargonate

dethiobiotin

DNA without lesion

5-enolpyruvoyl-shikimate 3-phosphate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

porphobilinogen

preuroporphyrinogen

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

(S)-dihydroorotate

adenosine 5'-phosphosulfate

orotidine 5'-phosphate

N-(5-phosphoribosyl)-anthranilate

anthranilate

urea

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

5-amino-6-(D-ribitylamino)uracil

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

CO₂

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

oxaloacetate

H₂O

citrate

(2E,6E)-farnesyl diphosphate

sulfate

hydrogensulfite

selenite

selenate

thiosulfate

sulfite

hydrogencarbonate

phosphate

triphosphate

diphosphate

H⁺

ammonium

Fe²⁺

glutathione

methanethiol

thiocyanate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-iminopropanoate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

dehydrospermidine

spermidine

L-cysteinylglycine

D-alanyl-D-alanine

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,3-dihydroxybenzoate

4-aminobenzoate

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

preQ₀

hydrogen cyanide

coenzyme A

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

nicotinate

riboflavin

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

isovaleryl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

succinyl-CoA

3'-dephospho-CoA

malonyl-CoA

acetyl-CoA

(S)-malyl-CoA

oleoyl-CoA

18-hydroxylinoleoyl-CoA

palmitoyl-CoA

cis-vaccenoyl-CoA

myristoyl-CoA

palmitoleoyl-CoA

acetoacetyl-CoA

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

(R)-lactate

palmitate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

(R)-pantoate

orotate

acetate

L-α-amino-ε-keto-pimelate

carbamate

L-cysteine

L-tyrosine

L-cystathionine

L-glutamine

L-threonine

L-lysine

L-arginine

L-ornithine

L-aspartate

L-aspartyl-4-phosphate

L-isoleucine

L-valine

L-leucine

L-glutamate

L-asparagine

L-serine

L-tryptophan

L,L-diaminopimelate

L-alanine

L-methionine

N-carbamoyl-L-aspartate

glycine

L-citrulline

hypoglycin A

L-aspartate 4-semialdehyde

L-canaline

L-homoserine

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

L-homocysteine

S-adenosyl-L-methionine

1-aminocyclopropane-1-carboxylate

meso-diaminopimelate

β-alanine

D-glutamate

D-alanine

seleno-L-homocysteine

L-selenomethionine

3-phospho-L-serine

O-acetyl-L-homoserine

pyruvate

2-oxoglutarate

2-oxobutanoate

chorismate

succinate

fumarate

(S)-malate

cis-aconitate

D-threo-isocitrate

formate

hypoglycin B

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

N-acetyl-α-D-glucosamine 1-phosphate

D-glyceraldehyde

glycolaldehyde

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

D-arabinofuranose 5-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

UDP-α-D-galactose

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactofuranose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-4-dehydro-β-L-rhamnose

Reactive Blue 5

methylglyoxal

acetaldehyde

preQ₁

uracil

hypoxanthine

adenine

guanine

xanthosine

guanosine

adenosine

inosine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

XTP

ITP

GTP

ATP

IDP

ADP

GDP

XMP

IMP

GMP

AMP

dATP

dGTP

dITP

dIDP

dGDP

dADP

dIMP

dAMP

dGMP

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

precorrin-2

precorrin-1

dTDP

dTTP

CTP

dCTP

dUTP

UTP

dCDP

CDP

dUDP

UDP

uridine 2'3'-cyclic monophosphate

uridine 3'-monophosphate

cytidine 2',3'-cyclic monophosphate

cytidine-3'-monophosphate

dCMP

dUMP

dTMP

UMP

CMP

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

adenylo-succinate

5'-deoxyadenosine

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

5'-deoxy-5'-fluoroadenosine

(R)-NADPHX

(S)-NADPHX

NADPH

NADH

NADP⁺

NAD⁺

cyclic di-3',5'-guanylate

5-hydroxy-CTP

5-hydroxy-CMP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

DNA with lesion

protoheme

protoporphyrinogen IX

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

uroporphyrinogen-III

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminobutanoate

3-phospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

(R)-NADHX

(S)-NADHX