an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

α-D-ribose 1,5-bisphosphate

β-D-ribosylnicotinate

H₂O

CO₂

CDP-glycerol

quinolinate

poly (glycerol phosphate)

β-nicotinate D-ribonucleotide

hydrogen peroxide

phosphoenolpyruvate

oxaloacetate

3-dehydroshikimate

shikimate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

glycerone phosphate

all-trans-13,14-dihydroretinol

1,4-dihydroxy-2-naphthoyl-CoA

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

3-methyl-2-oxobutanoate

4-amino-4-deoxychorismate

histidinol

L-histidinol phosphate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

norspermidine

carboxynorspermidine

mesaconate

5-amino-6-(D-ribitylamino)uracil

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(lipoyl)adenylate

glycolate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

prenyl diphosphate

3-deoxy-α-D-manno-2-octulosonate

4-prenylphlorisobutyrophenone

anthranilate

isopentenyl diphosphate

2-dehydropantoate

butanoyl phosphate

shikimate 3-phosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

xanthine

hydroxypyruvate

1,4-dihydroxy-2-naphthoate

DNA without lesion

(4Z)-2-oxohept-4-enedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

nicotinate adenine dinucleotide

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

carboxyphosphate

carbamoyl phosphate

orotidine 5'-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(R)-4'-phosphopantothenate

(R)-pantothenate

1-piperideine 6-carboxylate

aminoacetone

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

ammonia

L-selenocystathionine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(S)-2-amino-6-oxohexanoate

N-(5-phosphoribosyl)-anthranilate

7-carboxy-7-deazaguanine

2-C-methyl-D-erythritol 4-phosphate

4'-phosphopantetheine

(R)-4'-phosphopantothenoyl-L-cysteine

(S)-dihydroorotate

2-maleylacetate

2-amino-3-carboxymuconate-6-semialdehyde

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

coproporphyrinogen III

lipid A disaccharide (E. coli)

lipid X

formate

autoinducer 2

S-ribosyl-L-homocysteine

3-phosphooxypyruvate

1-deoxy-L-glycero-tetrulose 4-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

thiamine diphosphate

thiamine phosphate

lipid IV_A

3-deoxy-D-manno-octulosonate 8-phosphate

urocanate

4-imidazolone-5-propanoate

isochorismate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(R)-mandelate

(S)-mandelate

2-succinylbenzoate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

α-D-galactosyl-(1,3)-β-D-galactosyl-(1,4)-N-acetyl-D-glucosamine

β-D-galactosyl-(1→4)-N-acetyl-D-glucosamine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

5-enolpyruvoyl-shikimate 3-phosphate

acetyl phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

carbamate

L-tyrosine

L-glutamate

glycine

L-aspartate

L-glutamine

L-tryptophan

L-asparagine

L-threonine

L-valine

L-alanine

L-serine

L-leucine

L-isoleucine

L-histidine

L-methionine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

L-homocysteine

3-sulfino-L-alanine

L-homoserine

meso-diaminopimelate

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

seleno-L-homocysteine

L-saccharopine

N-formimino-L-glutamate

N-carbamoyl-L-aspartate

(2S, 3S)-3-methylaspartate

3-phospho-L-serine

L-cystathionine

D-alanine

D-glutamate

β-alanine

4-aminobenzoate

orotate

(R)-pantoate

acetate

pristanate

palmitate

stearate

octanoate

laurate

7-hydroxylaurate

decanoate

18-hydroxystearate

18-hydroxyoleate

16-hydroxypalmitate

phytenate

(15Z)-tetracosenoate

oleate

linoleate

α-linolenate

(R)-glycerate

propanoate

2-oxoglutarate

pyruvate

2-oxobutanoate

chorismate

α,ω-9Z-octadecenedioate

succinate

fumarate

(S)-malate

nicotinamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

phlorisovalerophenone

all-trans-retinal

all-trans-retinol

β-carotene

15,15'-dihydroxy-β-carotene

β-carotene 15,15' epoxide

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

4-prenylphlorisovalerophenone

deoxycohumulone

deoxyhumulone

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

1-(β-D ribofuranosyl)nicotinamide

1-O-acetyl-α-maltose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

dTDP-β-L-rhamnose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-ribose-1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

aldehydo-D-arabinose 5-phosphate

aldehydo-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

α-D-galactopyranose

β-D-galactopyranose

D-glyceraldehyde

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

maltopentaose

maltohexaose

maltotriose

maltotetraose

maltoheptaose

acetaldehyde

menadione

caldariellaquinone

4-hydroxybenzoate

urate

menadiol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

caldariellaquinol

demethylmenaquinol-8

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

guanine

adenine

AMP

XMP

IMP

GMP

ATP

GTP

ADP

GDP

dADP

dGDP

dATP

dGTP

dGMP

dAMP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

2'-deoxyguanosine

2'-deoxyadenosine

7,8-dihydrolumazine

6-carboxy-5,6,7,8-tetrahydropterin

tetrahydromethanopterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydropteroate

5,10-methylene-tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

riboflavin

FMN

6,7-dimethyl-8-(1-D-ribityl)lumazine

uracil

preQ₁

dTTP

UDP

UTP

dUTP

CTP

dCTP

dTMP

dUMP

dCDP

dCMP

CDP

cytidine-3'-monophosphate

cytidine 2',3'-cyclic monophosphate

uridine 3'-monophosphate

uridine 2'3'-cyclic monophosphate

dTDP

UMP

CMP

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

adenosylcobalamin

coenzyme A

(R)-lipoate

cyclic-AMP

5'-deoxyadenosine

adenylo-succinate

guanosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate

NADP⁺

NAD⁺

NADPH

NADH

(S)-NADHX

(R)-NADHX

nicotinate

pyridoxal 5'-phosphate

cob(I)alamin

α-linolenoyl-CoA

linoleoyl-CoA

succinyl-CoA

4-hydroxybenzoyl-CoA

acetyl-CoA

isobutanoyl-CoA

3'-dephospho-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

16-hydroxypalmitoyl-CoA

palmitoyl-CoA

stearoyl-CoA

18-hydroxystearoyl-CoA

18-hydroxyoleoyl-CoA

pristanoyl-CoA

octanoyl-CoA

lauroyl-CoA

7-hydroxylauroyl-CoA

decanoyl-CoA

propanoyl-CoA

butanoyl-CoA

(Z)-15-tetracosenoyl-CoA

phytenoyl-CoA

(S)-methylmalonyl-CoA

trans-dienelactone

cis-dienelactone

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

2-aminoprop-2-enoate

2-iminopropanoate

hydrogencarbonate

hydrogensulfite

sulfite

chloride

phosphonate

phosphate

diphosphate

triphosphate

Mg²⁺

Fe²⁺

Zn²⁺

H⁺

ammonium

2-chloroacetate

preQ₀

(R)-4-hydroxymandelate

(S)-4-hydroxymandelate

ω-saturated C55 dolichol phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

sn-glycerol 1-phosphate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

2-iminosuccinate

oxygen

Mg-protoporphyrin

uroporphyrinogen-III

protoporphyrinogen IX

protoporphyrin IX

protoheme

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

DNA with lesion