an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
pseudouridine 5'-phosphate
2-(α-hydroxyethyl)thiamine diphosphate
L-selenocystathionine
ectoine
3-hydroxy-5- oxohexanoyl-CoA
3-hydroxy-5-oxohexanoate
dihydrophloroglucinol
phloroglucinol
pyrogallol
1,2,3,5-tetrahydroxybenzene
urea
2-amino-3-carboxymuconate-6-semialdehyde
gallate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
1,6-anhydro-N-acetyl-β-muramate
N-acetyl-D-muramate 6-phosphate
2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA
3-oxopimeloyl-CoA
S-(hydroxymethyl)mycothiol
3-hydroxypimeloyl-CoA
S-formylmycothiol
6-carboxyhex-2-enoyl-CoA
pimeloyl-CoA
thiamine diphosphate
cyclohex-1,5-diene-1-carbonyl-CoA
cyclohex-1-ene-1-carbonyl-CoA
ammonia
xanthine
CDP-glycerol
H2O
oxaloacetate
(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate
citrate
(2Z,4E)-2-aminomuconate
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
ManNAc-GlcNAc-PP-undecaprenol
hydrogen peroxide
D-gluconate 6-phosphate
isopentenyl diphosphate
hydroxypyruvate
(R)-pantothenate
(S)-ureidoglycolate
N-carbamoyl-2-oxoglycine
pseudouridine
2-dehydro-3-deoxy-D-gluconate 6-phosphate
3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA
3-(4-hydroxyphenyl)-3-oxo-propionyl-CoA
β-nicotinate D-ribonucleotide
nicotinate adenine dinucleotide
carbamoyl phosphate
autoinducer 2
poly(ribitol phosphate)
6-phospho D-glucono-1,5-lactone
O-D-alanyl-poly(ribitol phosphate)
arsenite
phosphoenolpyruvate
4-amino-4-deoxychorismate
H2
N-acetylglutamyl-phosphate
N-acetyl-L-glutamate 5-semialdehyde
L-arginino-succinate
5-amino-6-(5-phospho-D-ribitylamino)uracil
5-amino-6-(5-phospho-D-ribosylamino)uracil
4'-phosphopantetheine
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
α-D-glucosamine 1-phosphate
(R)-4'-phosphopantothenate
ethanolamine
(R)-4'-phosphopantothenoyl-L-cysteine
S-methyl-5'-thioadenosine
5-(methylsulfanyl)-α-D-ribose
O-ureido-L-homoserine
S-ribosyl-L-homocysteine
3-keto-β-D-galactose
(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate
(4,5-dihydro-5-oxofuran-2-yl)-acetate
(R)-mevalonate
glycolate
CO2
quinolinate
acetyl phosphate
(R)-5-phosphomevalonate
(R)-mevalonate diphosphate
α-ribazole 5'-phosphate
α-ribazole
prenyl diphosphate
oxalosuccinate
dihydroxyacetone
DNA without lesion
3-dehydroquinate
shikimate
3-dehydroshikimate
glycerone phosphate
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
1-deoxy-L-glycero-tetrulose 4-phosphate
5-phospho-β-D-ribosylamine
5-amino-6-(D-ribitylamino)uracil
3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate
(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA
5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA
3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate
(2Z,4Z)-2-hydroxyhexa-2,4-dienoate
2-hydroxy-cyclohexane-1-carbonyl-CoA
(S)-4-hydroxy-2-oxohexanoate
(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate
2-ketocyclohexane-1-carbonyl-CoA
nigerose
3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA
3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA
shikimate 3-phosphate
thiamine phosphate
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
5-enolpyruvoyl-shikimate 3-phosphate
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
3-carboxy-2,5-dihydro-5-oxofuran-2-acetate
2-carboxy-L-threo-pentonate
2-carboxy-L-xylonolactone
2,3-dioxo-L-gulonate
cyclic- 3,4-O-oxalyl-L-threonate
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
dehydroascorbate (bicyclic form)
cyclic-2,3-O-oxalyl-L-threonate
enol-phenylpyruvate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
L-dehydro-ascorbate
(2E,6E)-farnesyl diphosphate
L-homocysteine
monodehydroascorbate radical
sn-glycerol 3-phosphate
3-phospho-D-glyceroyl-phosphate
(R)-glycerate
2-phospho-D-glycerate
3-phospho-D-glycerate
hydrogen cyanide
coenzyme A
7,8-dihydrofolate monoglutamate
5,6,7,8-tetrahydrofolate
tetrahydropteroyl tri-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
thiamine
nicotinate
L-ascorbate
riboflavin
nicotinamide
pyridoxal
pyridoxal 5'-phosphate
pyridoxine
pyridoxine 5'-phosphate
pyridoxamine
pyridoxamine 5'-phosphate
spermidine
putrescine
L-citrulline
L-aspartate
L-glutamate
L-leucine
L-phenylalanine
L-methionine
L-alanine
L-lysine
L-arginine
L-asparagine
L-serine
glycine
L-cysteine
L-glutamine
L-tyrosine
S-adenosyl-L-homocysteine
L-ornithine
S-adenosyl-L-methionine
L-canaline
meso-diaminopimelate
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
L-cystathionine
N-formyl-L-methionine
N-acetyl-L-ornithine
N-acetyl-L-citrulline
seleno-L-homocysteine
N-formimino-glycine
N-acetyl-L-glutamate
D-glutamate
D-methionine
D-alanine
D-aspartate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
N-acetyl-L-glutaminyl-L-glutamine
N-acetyl-L-glutaminyl-L-glutamine amide
D-alanyl-D-alanine
ethanol
glycerol
D-mannitol 1-phosphate
D-mannitol
ethylene glycol
(S)-propane-1,2-diol
(R)-propane-1,2-diol
protocatechuate
D-glucono-1,5-lactone
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA
3'-dephospho-CoA
glutaryl-CoA
CoA-disulfide
acetyl-CoA
(S)-3-hydroxy-3-methylglutaryl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA
(3S)-hydroxyadipyl-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA
3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA
benzoyl-CoA
crotonyl-CoA
oleoyl-CoA
butanoyl-CoA
propanoyl-CoA
(3R)-3-hydroxybutanoyl-CoA
(S)-3-hydroxybutanoyl-CoA
(S)-3-hydroxydecanoyl-CoA
(S)-3-hydroxyhexanoyl-CoA
3-oxoadipyl-CoA
3-oxohexanoyl-CoA
3-oxodecanoyl-CoA
acetoacetyl-CoA
(S)-malyl-CoA
dioleoyl phosphatidate
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
1-oleoyl-2-palmitoyl-phosphatidylglycerol
1-oleoyl-2-lyso-glycerone phosphate
1-oleoyl-sn-glycerol 3-phosphate
trans,octacis-decaprenyl phosphate
di-trans,octa-cis-undecaprenyl phosphate
geranylgeranyl diphosphate
mono-trans,octa-cis-decaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
urate
4-aminobenzoate
dimethyl sulfide
thiocyanate
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
L-cysteate
3-sulfopyruvate
3-phenyl-2-oxopropanoate
butanoate
pyruvate
2-oxoglutarate
glyoxylate
3-oxoadipate
chorismate
succinate
fumarate
(S)-malate
cis-aconitate
3-carboxy-cis,cis-muconate
D-threo-isocitrate
acetate
D-gluconate
formate
(S)-lactate
(R)-lactate
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
N-acetyl-D-mannosamine 6-phosphate
FAD
FADH2
FMNH2
FMN
(S)-NADHX
(R)-NADHX
NADPH
NADH
NADP+
NAD+
maltotriose
β-D-cellobiose
XXXG xyloglucan oligosaccharide
maltotetraose
α-maltose
allolactose
lactose
melibiose
sucrose
XLLG xyloglucan oligosaccharide
XLXG xyloglucan oligosaccharide
XXLG xyloglucan oligosaccharide
raffinose
stachyose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
3'-ketolactose
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (mycobacteria)
a peptidoglycan dimer (E. faeciums)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-link (S. aureus)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
a peptidoglycan dimer (meso-diaminopimelate containing)
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
D-glyceraldehyde 3-phosphate
α-D-glucopyranose 1-phosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
5-phospho-α-D-ribose 1-diphosphate
D-tagatofuranose 1,6-bisphosphate
β-D-fructose 1,6-bisphosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
α-D-ribose-1-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
α-D-mannose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-fructofuranose 1-phosphate
D-tagatofuranose 6-phosphate
β-D-fructofuranose 6-phosphate
D-fructose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
α-D-galactose 6-phosphate
β-D-galactose 6-phosphate
α-D-mannopyranose 6-phosphate
β-D-mannopyranose 6-phosphate
UDP-α-D-galactose
UDP-α-D-galactofuranose
UDP-α-D-glucose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
GDP-α-D-mannose
sucrose 6F-phosphate
α-lactose 6'-phosphate
α,α-trehalose 6-phosphate
β-D-cellobiose 6'-phosphate
N-acetyl-β-D-glucosamine
N-acetyl-α-D-glucosamine
N-acetyl-α-D-mannosamine
α-D-glucopyranose
β-D-glucopyranose
β-D-fructofuranose
α-D-galactopyranose
β-D-galactopyranose
glycolaldehyde
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
protoporphyrin IX
protoheme
trimethyl sulfonium
sulfite
thiosulfate
hydrogensulfite
hydrogencarbonate
phosphonate
phosphate
diphosphate
Na+
ammonium
H+
Fe2+
Mg2+
Cu2+
Cd2+
Ni2+
Co2+
5,10-methenyltetrahydrofolate mono-L-glutamate
oxygen
guanosine 2',3'-cyclic monophosphate
adenosine 2',3'-cyclic monophosphate
2'-deoxyadenosine
2'-deoxyinosine
IMP
GMP
pppGpp
ATP
2'-deoxyguanosine
dGMP
dAMP
ppGpp
cyclic-AMP
IDP
ITP
AMP
dIDP
dITP
adenylo-succinate
adenosine 3'-monophosphate
XMP
hypoxanthine
guanosine 3'-monophosphate
dATP
dADP
dGTP
dGDP
GTP
GDP
ADP
adenosine
inosine
guanosine
xanthosine
uridine
cytidine
thymidine
2'-deoxycytidine
2'-deoxyuridine
uridine 3'-monophosphate
cytidine-3'-monophosphate
dCDP
dUDP
dTDP
UDP
CDP
dUMP
dTMP
dCMP
UMP
CMP
dUTP
dTTP
dCTP
CTP
UTP
cytidine 2',3'-cyclic monophosphate
uridine 2'3'-cyclic monophosphate
β-nicotinamide D-ribonucleotide
uracil
guanine
adenine
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydropteroate
6,7-dimethyl-8-(1-D-ribityl)lumazine
adenosylcobalamin
2-iminosuccinate
(S)-lactaldehyde
(R)-lactaldehyde
formaldehyde
acetaldehyde
1-propanal
DNA with lesion
22-hydroxy-3-oxochol-4-en-24-oyl-CoA
3,22-dioxochol-4-en-24-oyl-CoA
24-hydroxy-3-oxocholest-4-en-26-oyl-CoA
3,24-dioxocholest-4-en-26-oyl-CoA
androst-4-ene-3,17-dione
3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione
3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione
9α-hydroxyandrosta-1,4-diene-3,17-dione
androsta-1,4-diene-3,17-dione
glycerophosphoserine
glycerophosphoglycerol
sn-glycero-3-phosphoethanolamine
ethylphosphate
(2-aminoethyl)phosphonate
adenosyl-cob(III)yrinate a,c-diamide
adenosylcobyrate
adenosylcobalamin 5'-phosphate