an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
H2O
hydrogen peroxide
CO2
acetyl phosphate
D-gluconate 6-phosphate
2-amino-2-deoxy-D-gluconate 6-phosphate
glycerone phosphate
N-acetyl-D-muramate 6-phosphate
O-D-alanyl-poly(ribitol phosphate)
poly(ribitol phosphate)
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
ethanolamine
(R)-4'-phosphopantothenate
(R)-pantothenate
salicyl alcohol
(4-hydroxyphenyl)acetate
autoinducer 2
S-ribosyl-L-homocysteine
2,5-didehydro-D-gluconate
2-keto-D-gluconate
succinate semialdehyde
5-hydroxyindole acetaldehyde
5-hydroxytryptophol
3-methoxy-4-hydroxyphenylglycolaldehyde
indole-3-glycol aldehyde
indole-3-glycol
isobutanol
3-methylbutanal
3-methylbutanol
2-methylbutanal
2-methylbutanol
2-phenylethanol
ManNAc-GlcNAc-PP-undecaprenol
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
nicotinate adenine dinucleotide
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
β-nicotinate D-ribonucleotide
(R)-mevalonate
phosphoenolpyruvate
α-D-glucosamine 1-phosphate
(R)-4'-phosphopantothenoyl-L-cysteine
pseudouridine 5'-phosphate
ammonia
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
enol-phenylpyruvate
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
5-(methylsulfanyl)-α-D-ribose
S-methyl-5'-thioadenosine
xanthine
(S)-2-acetolactate
(S)-2-aceto-2-hydroxybutanoate
N-succinyl-2-amino-6-ketopimelate
(S)-2,3,4,5-tetrahydrodipicolinate
N-acetyl-L,L-2,6-diaminopimelate
carbamoyl phosphate
isopentenyl diphosphate
(R)-mevalonate diphosphate
(R)-5-phosphomevalonate
prenyl diphosphate
(S)-dihydroorotate
orotidine 5'-phosphate
oxaloacetate
glutathione disulfide
DNA without lesion
3-(O-geranylgeranyl)-sn-glycerol 1-phosphate
4-prenylphlorisobutyrophenone
(indol-3-yl)pyruvate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
6-phospho D-glucono-1,5-lactone
indole-3-lactate
acetoacetate
N-succinyl-L,L-2,6-diaminopimelate
carbon monoxide
1,6-anhydro-N-acetyl-β-muramate
3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate
7-epicholate
2-iminoacetate
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
N1-(5-phospho-β-D-ribosyl)glycinamide
3-methyl-2-oxobutanoate
pseudouridine
4'-phosphopantetheine
quinolinate
2-amino-3-carboxymuconate-6-semialdehyde
CDP-glycerol
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
4-amino-2-methyl-5-pyrimidinemethanol
L-arginino-succinate
(2E,6E)-farnesyl diphosphate
L-homocysteine
4-methylphenol
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-α-amino-ε-keto-pimelate
L-alanine
L-phenylalanine
L-methionine
glycine
L-tryptophan
L-leucine
L-valine
L-cysteine
L-ornithine
L-asparagine
L-aspartate
L-serine
L-glutamate
L-glutamine
L-aspartyl-4-phosphate
L,L-diaminopimelate
L-histidine
L-lysine
L-arginine
L-tyrosine
N-carbamoyl-L-aspartate
L-citrulline
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
L-aspartate 4-semialdehyde
meso-diaminopimelate
D-alanine
D-glutamate
D-aspartate
2-iminopropanoate
2-iminosuccinate
ADP
ATP
dGMP
2'-deoxyguanosine
AMP
dADP
GDP
dGDP
GMP
GTP
ppGpp
pppGpp
hypoxanthine
IMP
adenylo-succinate
XMP
5'-deoxyadenosine
dATP
dGTP
2'-deoxyadenosine
dAMP
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-α-D-galactose
UDP-α-D-glucose
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
adenine
guanine
uracil
NADP+
NAD+
NADPH
NADH
dUMP
dTMP
dTDP
dUTP
dCTP
dTTP
UDP
β-nicotinamide D-ribonucleotide
UTP
CTP
CMP
UMP
xanthosine
guanosine
adenosine
D-gluconate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
arbutin-6-phosphate
salicin 6-phosphate
methyl β-D-glucoside 6-phosphate
5-phospho-α-D-ribose 1-diphosphate
α-D-galactose 1-phosphate
α-D-glucopyranose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
α-D-galactose 6-phosphate
β-D-galactose 6-phosphate
β-D-fructofuranose 6-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
D-tagatofuranose 6-phosphate
D-tagatofuranose 1,6-bisphosphate
β-D-glucose 6-phosphate
α-D-glucose 6-phosphate
α-D-mannopyranose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-ribose-1-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
aldehydo-D-ribose 5-phosphate
β-D-ribose 5-phosphate
α-D-ribose 5-phosphate
D-ribulose 5-phosphate
D-glyceraldehyde 3-phosphate
N,N'-diacetylchitobiose 6'-phosphate
N-monoacetylchitobiose 6'-phosphate
sucrose 6F-phosphate
α-lactose 6'-phosphate
β-D-cellobiose 6'-phosphate
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (E. faecium, tetrapeptide)
a peptidoglycan dimer (mycobacteria)
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-link (S. aureus)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)
β-D-fructofuranose
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
α-D-galactopyranose
β-D-galactopyranose
β-D-glucopyranose
α-D-glucopyranose
D-glyceraldehyde
N-acetylmuramate
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetyl-β-D-glucosamine
glycerol
maltotriose
1-kestotriose
sucrose
melibiose
α-maltose
maltotetraose
maltopentaose
maltohexaose
maltoheptaose
stachyose
raffinose
phlorisovalerophenone
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
(3S)-linalool
(3R)-linalool
geranyl diphosphate
deoxycohumulone
4-prenylphlorisovalerophenone
deoxyhumulone
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
geranylgeranyl diphosphate
hydroquinone
3,4-dihydroxyphenylglycolaldehyde
3,4-dihydroxyphenylglycol
ethanol
propan-1-ol
phytol
methanol
(4-hydroxyphenyl)acetaldehyde
phenylacetaldehyde
phytenal
acetaldehyde
1-propanal
isobutanal
diacetyl
pyruvate
glyoxylate
2-oxobutanoate
2-oxoglutarate
4-(methylsulfanyl)-2-oxobutanoate
3-phenyl-2-oxopropanoate
3-(4-hydroxyphenyl)pyruvate
acetate
orotate
formate
(S)-lactate
(R)-lactate
succinate
fumarate
(S)-malate
Gro-P-ManNAc-GlcNAc-PP-undecaprenol
4-tyrosol
demethylmenaquinol-8
menaquinol-8
3-methoxy-4-hydroxyphenylglycol
7,8-dihydrofolate monoglutamate
5,6,7,8-tetrahydrofolate
tetrahydropteroyl tri-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
FMN
riboflavin
FMNH2
reduced riboflavin
nicotinate
nicotinamide
coenzyme A
(R)-NADHX
(S)-NADHX
(S)-3-hydroxy-3-methylglutaryl-CoA
acetyl-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
succinyl-CoA
3'-dephospho-CoA
acetoacetyl-CoA
3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate
3α,7α,12β-trihydroxy-5β-cholan-24-oate
cholate
glycocholate
isocholate
3-dehydrocholate
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
glycerophosphoglycerol
glycerophosphoserine
sn-glycero-3-phosphoethanolamine
putrescine
spermidine
2-aminoprop-2-enoate
trimethyl sulfonium
hydrogencarbonate
phosphonate
phosphate
diphosphate
Cd2+
Cu2+
ammonium
H+
3-(methylsulfanyl)propanal
methionol
dimethyl sulfide
glutathione
3-sulfopyruvate
L-cysteate
5,10-methenyltetrahydrofolate mono-L-glutamate
α-D-glucosamine 6-phosphate
3-phospho-D-glyceroyl-phosphate
2,3-diphospho-D-glycerate
3-phospho-D-glycerate
2-phospho-D-glycerate
sn-glycerol 3-phosphate
sn-glycerol 1-phosphate
oxygen
ethylphosphate
DNA with lesion