an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

7,8-didemethyl-8-hydroxy-5-deazariboflavin

oxalate

N-Formyl-L-kynurenine

deethylsimazine

N-ethylammeline

3-methyl-2-oxobutanoate

(2R,3S)-3-methylmalate

citraconate

oxalosuccinate

coenzyme F₃₉₀-A

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

(4Z)-2-oxohept-4-enedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

orotidine 5'-phosphate

thiamine phosphate

histidinal

histidinol

preuroporphyrinogen

hydrogen peroxide

5,6-dimethylbenzimidazole

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-5-[1-α -D- ribofuranosyl 5-phosphate]-D-ribitol

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-5-[1-α -D- ribofuranosyl triphosphate]-D-ribitol

S-ribosyl-L-homocysteine

autoinducer 2

shikimate

shikimate 3-phosphate

prephenate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

5-phospho-β-D-ribosylamine

N-acetylglutamyl-phosphate

(R)-mevalonate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

5-deoxy-α-ribose 1-phosphate

3-dehydroquinate

3-dehydroshikimate

glycerone phosphate

hexulose 6-phosphate

4-amino-4-deoxychorismate

2-(α-hydroxyethyl)thiamine diphosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

urea

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

cyclohexane-1-carbonyl-CoA

cyclohexane-1-carboxylate

carbon monoxide

3-oxopimeloyl-CoA

3-hydroxypimeloyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

H₂O

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

(2S)-2-isopropylmalate

cyclohex-1,5-diene-1-carbonyl-CoA

crotonate

prenyl diphosphate

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

3-phosphooxypyruvate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

L-canavanine

5-amino-6-(D-ribitylamino)uracil

CDP-glycerol

methanophenazine

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

L-arginino-succinate

4-acetamidobutanal

4-acetamidobutanoate

O-ureido-L-homoserine

canavaninosuccinate

succinate semialdehyde

carbamoyl phosphate

5-oxo-L-proline

α-ribazole

3-ureidopropanoate

coenzyme B

CoB-CoM heterodisulfide

acetyl phosphate

H₂

dihydromethanophenazine

hydrogen selenide

hydroxylamine

O-acetyl-L-serine

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

β-nicotinate D-ribonucleotide

(R)-1-amino-2-propanol O-2-phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

nicotinate adenine dinucleotide

α-ribazole 5'-phosphate

2-C-methyl-D-erythritol 4-phosphate

quinolinate

D-erythro-imidazole-glycerol-phosphate

coproporphyrinogen III

CO₂

carbonic acid

L-β-lysine

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

isopentenyl diphosphate

2-phosphoglycolate

glycolate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

dialurate

N-(5-phosphoribosyl)-anthranilate

anthranilate

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

pyruvic oxime

L-dehydro-ascorbate

α-D-galacturonate 1-phosphate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

4-(β-D-ribofuranosyl)-N-succinylaminobenzene 5'-phosphate

4-(β-D-ribofuranosyl)hydroxybenzene 5'-phosphate

ammonia

arsenite

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

α-D-glucosamine 1-phosphate

mycothiol-arsenate conjugate

(S)-dihydroorotate

oxaloacetate

thiamine diphosphate

citrate

N-acetyl-L-glutamate 5-semialdehyde

imidazole acetol-phosphate

L-histidinol phosphate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

phosphoenolpyruvate

pseudaminate

(2S,5S)-5-carboxymethyl proline

nigerose

N-(2,3-dihydroxybenzoyl)-L-serine trimer

sulfoethylcysteine

2-(sulfomethyl)thiazolidine-4-carboxylate

β-D-galactosyl-(1→4)-N-acetyl-D-glucosamine

5-enolpyruvoyl-shikimate 3-phosphate

DNA without lesion

5-methylcytosine

4-amino-2-methyl-5-pyrimidinemethanol

(R)-5-phosphomevalonate

5-aminolevulinate

porphobilinogen

(S)-4-amino-5-oxopentanoate

(R)-mevalonate diphosphate

γ-L-glutamyl 5-phosphate

(2S)-lactyl-2-diphospho-5'-guanosine

(2E,6E)-farnesyl diphosphate

pristanate

phenylacetyl-CoA

succinyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

isobutanoyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

glutaryl-CoA

malonyl-CoA

crotonyl-CoA

phytenoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

octanoyl-CoA

decanoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

L-galactono-1,4-lactone

D-glucono-1,5-lactone

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

2-iminobutanoate

2-iminosuccinate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

L-kynurenine

L-asparagine

L-serine

L-cysteine

L-glutamine

glycine

L-tyrosine

L-histidine

N^ω-hydroxy-L-arginine

L-arginine

L-lysine

L-aspartate

L-glutamate

L-citrulline

L-tryptophan

L-valine

L-proline

L-methionine

L-isoleucine

L-leucine

L-alanine

L-phenylalanine

L-canaline

L-glutamate-5-semialdehyde

L-ornithine

S-sulfo-L-cysteine

L-homocysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

L-homoserine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-cystathionine

L-aspartyl-4-phosphate

N-acetyl-L-ornithine

N-carbamoyl-L-aspartate

β-alanine

D-glutamate

L-threonine 3-O-phosphate

3-phospho-L-serine

N-carbamoylglycine

N-acetyl-L-glutamate

N-acetyl-L-methionine

O-acetyl-L-homoserine

superoxide

nitric oxide

monodehydroascorbate radical

hydroxyl radical

agmatine

N-acetylputrescine

N¹-acetylspermine

N¹-acetylspermidine

dehydrospermidine

putrescine

spermine

spermidine

tyramine

(2Z)-2-aminobut-2-enoate

methyl-CoM

tetrahydrosarcinapterin

5-methyl-tetrahydrosarcinapterin

coenzyme A

coenzyme M

molybdopterin

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

oxidized coenzyme F₄₂₀-2

oxidized coenzyme F₄₂₀-0

demethylated 7,8-dihydromethanopterin

7,8-dihydromethanopterin

N⁵-methyltetrahydromethanopterin

tetrahydromethanopterin

5,10-methenyltetrahydromethanopterin

5-formyl-tetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

riboflavin

nicotinate

L-ascorbate

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

adenine

2'-deoxyguanosine

2'-deoxyadenosine

adenosine

guanosine

inosine

dAMP

dGMP

dATP

dGTP

dITP

dADP

dGDP

dIDP

IDP

GDP

ADP

XMP

AMP

GMP

IMP

ITP

GTP

ATP

adenosylcobalamin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-4

precorrin-1

precorrin-2

cobalt-precorrin-2

cobalt-precorrin-6A

precorrin-7

precorrin-6B

precorrin-6A

precorrin-3A

precorrin-5

cobalt-precorrin-3

cobalt-precorrin-5A

cobalt-precorrin-5B

precorrin-3B

precorrin-4

precorrin-8x

sirohydrochlorin

cobyrinate

hydantoin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-triphosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-D-ribitol 5'-phosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-D-ribitol

cyclic pyranopterin phosphate

molybdopterin adenine dinucleotide

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

uracil

dCMP

dUMP

dTMP

dTDP

dTTP

CDP

dCDP

dCTP

dUDP

dUTP

UTP

5,6-dihydrouracil

5,6-dihydrothymine

CTP

UDP

cytosine

orotate

cytidine

2'-deoxyuridine

2'-deoxycytidine

thymidine

thymine

CMP

UMP

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactofuranose

UDP-α-D-glucuronate

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-mannosamine

UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose

UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hex-4-ulose

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

5-fluorouracil

isoguanine

(S)-1-pyrroline-5-carboxylate

(indole-3-yl)acetonitrile

hydrogen cyanide

4-hydroxybenzoate

salicylaldehyde

benzaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

salicylate

4-aminobenzoate

benzoate

(15Z)-tetracosenoate

octanoate

decanoate

oleate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

apo-4'-lycopenoate

phytenate

palmitate

chorismate

fumarate

succinate

(S)-malate

3-(carbamoylamino)-2-methylpropanoate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

cis-aconitate

D-threo-isocitrate

(S)-lactate

(R)-lactate

(S)-2-hydroxyglutarate

acetate

pyruvate

formate

propanoate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

5-chloro-4-hydroxy-2-oxopentanoate

2-oxoglutarate

2-oxobutanoate

5-chloro-5-deoxy-D-ribonate

D-gluconate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

DNA with lesion

phenylacetate

cobalt-sirohydrochlorin

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosyl-cobinamide phosphate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

cobalt-factor III

N₂

uroporphyrinogen-III

protoporphyrinogen IX

uroporphyrinogen-I

siroheme

oxygen

hydrogen sulfide

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

2-O-(α-D-mannosyl)-D-glycerate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(R)-citramalate

5,10-methenyltetrahydrofolate mono-L-glutamate

3-(all-trans-octaprenyl)benzene-1,2-diol

2-octaprenylphenol

methylglyoxal

diacetyl

(R)-acetoin

glycolaldehyde

formaldehyde

1-octanal

acetaldehyde

phytenal

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

methanol

ethanol

(3R)-linalool

(3S)-linalool

myo-inositol

scyllo-inosose

galactinol

D-galactosylononitol

D-ononitol

1D-myo-inositol 3-monophosphate

unsaturated CDP-archaeol

saturated CDP-archaeol

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

unsaturated archaetidylserine

saturated archaetidylserine

saturated archaetidylethanolamine

unsaturated archaetidylethanolamine

geranyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

phytyl diphosphate

3-octaprenyl-4-hydroxybenzoate

phlorisovalerophenone

deoxyhumulone

4-prenylphlorisovalerophenone

deoxycohumulone

ferric-[N-(2,3-dihydroxybenzoyl)-L-serine trimer] complex

keto-D-fructose

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose

2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose

D-ribulose-1,5-bisphosphate

sucrose 6^F-phosphate

GDP-α-D-mannuronate

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

L-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

sucrose

aldehydo-L-galactonate

L-gulonate

adenylo-succinate

cyclic-AMP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

8-oxo-GTP

8-oxo-dGTP

5-fluorocytosine

2-hydroxy-dATP

5-hydroxy-CTP

dimethyl sulfide

thiocyanate

methanethiol

mycothiol

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

3-sulfopyruvate

sulfoacetaldehyde

L-cysteate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

trimethyl sulfonium

sulfite

thiosulfate

OH^-

hydrogensulfite

hydrogencarbonate

molybdate

arsenate

chloride

phosphate

triphosphate

diphosphate

Fe³⁺

Na⁺

K⁺

ammonium

H⁺

Fe²⁺

Co²⁺

methane

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

(indol-3-yl)acetate