an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

4-oxoglutaramate

aminoacetone

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

pyruvic oxime

ammonia

selenodiglutathione

glutathioselenol

S-ribosyl-L-homocysteine

autoinducer 2

dialurate

(R)-1-amino-2-propanol O-2-phosphate

pimelate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

formamide

1-(methylsulfanyl)xylulose 5-phosphate

4-amino-2-methyl-5-pyrimidinemethanol

hydroxypyruvate

glutathione disulfide

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

2-amino-3-carboxymuconate-6-semialdehyde

2-(α-hydroxyethyl)thiamine diphosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

1-deoxy-L-glycero-tetrulose 4-phosphate

3-deoxy-D-manno-octulosonate 8-phosphate

nicotinate adenine dinucleotide

5-amino-6-(D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

urea

lipid X

β-D-ribosylnicotinate

2-phosphoglycolate

glycolate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

lipid A disaccharide (E. coli)

lipid IV_A

7-carboxy-7-deazaguanine

isopentenyl diphosphate

L-canavanine

4-imidazolone-5-propanoate

urocanate

(S)-2,3,4,5-tetrahydrodipicolinate

thiamine diphosphate

acetyl phosphate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

3-dehydroquinate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

phthalate

2,2'-disulfonyl azobenzene

3-[(4-amino-6-chloro-1,3,5-triazin-2-yl)amino]benzenesulfonate

5-phospho-β-D-ribosylamine

dihydroxyacetone

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

shikimate 3-phosphate

(R)-pantothenate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

γ-L-glutamyl 5-phosphate

prenyl diphosphate

orotidine 5'-phosphate

quinolinate

5-enolpyruvoyl-shikimate 3-phosphate

(S)-2-acetolactate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

D-erythro-imidazole-glycerol-phosphate

shikimate

3-dehydroshikimate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

7,8-diaminopelargonate

dethiobiotin

pimeloyl-CoA

8-amino-7-oxononanoate

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

α-ribazole

5,6-dimethylbenzimidazole

β-nicotinate D-ribonucleotide

α-ribazole 5'-phosphate

N-acetyl-L-glutamate 5-semialdehyde

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

N-acetyl-D-muramate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

oxaloacetate

3-phosphonopyruvate

2-C-methyl-D-erythritol 4-phosphate

N-acetylglutamyl-phosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

3-phosphooxypyruvate

3-deoxy-α-D-manno-2-octulosonate

1,4-dihydroxy-2-naphthoate

3-amino-1-hydroxyacetone 1-phosphate

4-pyridoxolactone

pseudaminate

CDP-glycerol

3-deoxy-D-arabino-heptulosonate 7-phosphate

glycerone phosphate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

isochorismate

xanthine

(S)-dihydroorotate

oxalosuccinate

citrate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

carbon monoxide

H₂

phosphoenolpyruvate

hydrogen selenide

O-acetyl-L-serine

imidazole acetol-phosphate

L-histidinol phosphate

histidinal

histidinol

carboxynorspermidine

norspermidine

DNA without lesion

4-aminobutanoate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

adenosine 3',5'-bisphosphate

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

dihydrolipoamide

lipoamide

(lipoyl)adenylate

α-D-glucopyranosyl-diphosphoundecaprenol

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

N-(5-phosphoribosyl)-anthranilate

anthranilate

CO₂

carbamoyl phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

α-D-glucosamine 1-phosphate

hydroxylamine

2-dehydropantoate

hydrogen peroxide

(L-threonylcarbamoyl)adenylate

H₂O

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

(2E,6E)-farnesyl diphosphate

L-homocysteine

DNA with lesion

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

adenosylcobalamin

cob(I)alamin

cobalt-factor III

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosylcobyrate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

uroporphyrinogen-III

hydrogen sulfide

oxygen

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

Reactive Blue 5

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

1-oleoyl-2-lyso-glycerone phosphate

superoxide

5,10-methenyltetrahydrofolate mono-L-glutamate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

preQ₀

(R)-lipoate

coenzyme A

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

FMNH₂

FMN

FAD

FADH₂

(R)-NADHX

(S)-NADHX

demethylmenaquinol-8

ubiquinol-8

menaquinol-8

3-demethylubiquinol-8

NADP⁺

NAD⁺

NADPH

NADH

glycine betaine

riboflavin

thiamine

nicotinate

pyridoxamine

pyridoxine

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal

trimethyl sulfonium

sulfate

selenite

selenate

selenide

thiosulfate

hydrogencarbonate

phosphate

triphosphate

diphosphate

H⁺

K⁺

ammonium

Co²⁺

S-(hydroxymethyl)glutathione

dimethyl sulfide

glutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

methanethiol

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

spermidine

putrescine

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

glycerol

ethanol

methanol

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

L-α-amino-ε-keto-pimelate

L-serine

β-alanine

D-glutamate

L-glutamate

L-lysine

L-arginine

L-histidine

glycine

L-alanine

L-proline

L-glutamine

L-leucine

L-aspartate

L-tyrosine

L-asparagine

L-threonine

L-cysteine

L-tryptophan

D-alanine

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

3-phospho-L-serine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-acetyl-L-glutamate

O-acetyl-L-homoserine

L-selenocysteine

L-isoleucine

L-valine

L-methionine

L-isoglutamine

L,L-diaminopimelate

L-ornithine

L-cystathionine

L-citrulline

O-phospho-L-homoserine

L-canaline

L-glutamate-5-semialdehyde

L-homoserine

O-succinyl-L-homoserine

S-sulfo-L-cysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

meso-diaminopimelate

chorismate

(4S)-4-hydroxy-2-oxoglutarate

succinate

fumarate

(S)-malate

(R)-lactate

acetate

pyruvate

formate

2-oxobutanoate

glyoxylate

2-oxoglutarate

cis-aconitate

D-threo-isocitrate

4-aminobenzoate

D-mannonate

orotate

(R)-pantoate

(S)-1-pyrroline-5-carboxylate

diacetyl

methylglyoxal

glycolaldehyde

acetaldehyde

formaldehyde

(S)-lactaldehyde

α-D-galactopyranose

β-D-galactopyranose

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

1-(β-D ribofuranosyl)nicotinamide

2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

CMP-pseudaminate

CMP-3-deoxy-β-D-manno-octulosonate

CDP-4-dehydro-6-deoxy-α-D-glucose

CDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

UDP-4-amino-4,6-dideoxy-N-acetyl-β-L-altrosamine

UDP-2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose

UDP-N-acetyl-α-D-quinovosamine

UDP-N-acetyl-α-D-fucosamine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galactose

UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hex-4-ulose

UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α,α-trehalose 6-phosphate

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-galactose 1-phosphate

L-rhamnulose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

α-D-ribose-1-phosphate

β-D-fructofuranose

keto-D-fructose

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

D-xylulose

maltotetraose

maltotriose

maltoheptaose

maltohexaose

maltopentaose

sucrose

α,α-trehalose

3'-dephospho-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

succinyl-CoA

acetyl-CoA

malonyl-CoA

(S)-malyl-CoA

oleoyl-CoA

propanoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

dioleoyl phosphatidate

1-oleoyl-sn-glycerol 3-phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin

7,8-dihydropteroate

6-carboxy-5,6,7,8-tetrahydropterin

adenine

guanine

2'-deoxyadenosine

2'-deoxyguanosine

xanthosine

guanosine

inosine

adenosine

hypoxanthine

dAMP

dGMP

dGTP

dATP

dITP

dGDP

dADP

dIDP

ITP

GTP

ATP

IDP

GDP

ADP

XMP

IMP

GMP

AMP

precorrin-1

precorrin-3B

precorrin-7

precorrin-8x

precorrin-6B

precorrin-4

precorrin-5

precorrin-2

precorrin-3A

sirohydrochlorin

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dCMP

uridine 3'-monophosphate

cytidine-3'-monophosphate

dTDP

CDP

dUDP

dUTP

dCDP

dCTP

UTP

uracil

dTMP

dUMP

CTP

dTTP

UDP

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

CMP

UMP

preQ₁

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

adenosine 3'-monophosphate

guanosine 3'-monophosphate

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA