an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

orotidine 5'-phosphate

(R)-pantothenate

4-aminobutanoate

(S)-dihydroorotate

thiamine diphosphate

thiamine phosphate

3-deoxy-D-manno-octulosonate 8-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

carbamoyl phosphate

histidinol

histidinal

L-histidinol phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

coproporphyrinogen III

citrate

5-phospho-β-D-ribosylamine

2-iminoacetate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

7,8-diaminopelargonate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

8-amino-7-oxononanoate

(S)-2-amino-6-oxohexanoate

oxalosuccinate

4'-phosphopantetheine

lipid A disaccharide (E. coli)

lipid X

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

(2S)-2-isopropylmalate

2-isopropylmaleate

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

3-phosphooxypyruvate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-deoxy-α-D-manno-2-octulosonate

4-pyridoxolactone

acetyl phosphate

butanoyl phosphate

3-dehydroshikimate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

O-ureido-L-homoserine

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

γ-L-glutamyl 5-phosphate

anthranilate

N-(5-phosphoribosyl)-anthranilate

2-dehydropantoate

5-enolpyruvoyl-shikimate 3-phosphate

dethiobiotin

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

hydroxylamine

(S)-2,3,4,5-tetrahydrodipicolinate

lipid IV_A

α-D-glucosamine 1-phosphate

4-amino-2-methyl-5-pyrimidinemethanol

2-dehydro-3-deoxy-D-gluconate 6-phosphate

ammonia

pyruvic oxime

aminoacetone

1-piperideine 6-carboxylate

CO₂

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

(2R,3S)-3-isopropylmalate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

H₂O

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

prephenate

L-canavanine

canavaninosuccinate

L-arginino-succinate

lipoamide

dihydrolipoamide

2-dehydro-3-deoxy-D-gluconate

1,4-dihydroxy-2-naphthoate

xanthine

4-amino-4-deoxychorismate

(L-threonylcarbamoyl)adenylate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

shikimate 3-phosphate

shikimate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

hydrogen peroxide

oxaloacetate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

isopentenyl diphosphate

prenyl diphosphate

DNA without lesion

O-acetyl-L-serine

hydrogen selenide

2-C-methyl-D-erythritol 4-phosphate

3-deoxy-D-glycero-2,5-hexodiulosonate

phosphoenolpyruvate

5-amino-6-(D-ribitylamino)uracil

quinolinate

glycerone phosphate

carbon monoxide

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N¹-(5-phospho-β-D-ribosyl)glycinamide

L-α-amino-ε-keto-pimelate

L-citrulline

L-valine

L-isoleucine

L-methionine

glycine

L-histidine

L-alanine

L-lysine

L-tryptophan

L-cysteine

L-arginine

L-threonine

L-glutamate

L-glutamine

L-aspartate

L-serine

L-proline

L-asparagine

L-tyrosine

L-leucine

O-phospho-L-homoserine

L-homoserine

L-canaline

L-ornithine

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

L-homocysteine

S-adenosyl-L-homocysteine

S-sulfo-L-cysteine

L-aspartate 4-semialdehyde

meso-diaminopimelate

L-selenocysteine

L-cystathionine

L,L-diaminopimelate

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

N-formyl-L-methionine

L-2-amino-3-oxobutanoate

O-acetyl-L-homoserine

N-acetyl-L-glutamate

3-phospho-L-serine

D-alanine

D-glutamate

β-alanine

D-alanyl-D-alanine

guanosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

1-(5-phospho-β-D-ribosyl)-ATP

IDP

ITP

dADP

dATP

dGDP

dGTP

AMP

1-(5-phospho-β-D-ribosyl)-AMP

ADP

ATP

GMP

hypoxanthine

IMP

XMP

GDP

adenylo-succinate

GTP

5'-deoxyadenosine

guanine

adenine

preQ₁

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dTDP

dUDP

dCDP

dTTP

dCTP

dUTP

dTMP

dCMP

dUMP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

UMP

CMP

UDP

CDP

UTP

CTP

NADH

NADPH

NAD⁺

NADP⁺

cytidine-3'-monophosphate

uridine 3'-monophosphate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

GDP-α-D-mannose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CMP-3-deoxy-β-D-manno-octulosonate

xanthosine

guanosine

adenosine

cytidine

uridine

orotate

(S)-1-pyrroline-5-carboxylate

adenosylcobalamin

cob(I)alamin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

7,8-dihydropteroate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

6,7-dimethyl-8-(1-D-ribityl)lumazine

FADH₂

FAD

riboflavin

4-hydroxybenzoate

3-hexaprenyl-4-hydroxybenzoate

demethylmenaquinol-8

4-methylphenol

4-aminobenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

3-decaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-decaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3'-dephospho-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

malonyl-CoA

succinyl-CoA

acetyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

propanoyl-CoA

D-mannonate

5-dehydro-4-deoxy-D-glucuronate

sucrose

α,α-trehalose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

β-D-glucopyranose

α-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

β-L-rhamnopyranose

α-L-rhamnopyranose

D-glyceraldehyde

glycolaldehyde

D-xylulose

keto-D-fructose

β-D-fructofuranose

L-fuculose

N-acetyl-α-D-glucosamine 1-phosphate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

α-D-ribose-1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

L-fuculose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

aldehydo-D-galacturonate

(R)-lactaldehyde

(S)-lactaldehyde

formaldehyde

acetaldehyde

methylglyoxal

diacetyl

cis-aconitate

D-threo-isocitrate

(R)-pantoate

5-chloro-5-deoxy-D-ribonate

acetate

D-tagaturonate

butanoate

glyoxylate

5-chloro-4-hydroxy-2-oxopentanoate

pyruvate

2-oxobutanoate

2-oxoglutarate

3-(4-hydroxyphenyl)pyruvate

propanoate

formate

chorismate

succinate

fumarate

(S)-malate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

ethylene glycol

(R)-propane-1,2-diol

(S)-propane-1,2-diol

ethanol

methanol

(2Z)-2-aminobut-2-enoate

dimethyl sulfide

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

superoxide

hydrogencarbonate

thiosulfate

phosphate

triphosphate

diphosphate

K⁺

ammonium

H⁺

Mg²⁺

Fe²⁺

trimethyl sulfonium

pyridoxal

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxamine

pyridoxine

(S)-NADHX

(R)-NADHX

coenzyme A

preQ₀

5,10-methenyltetrahydrofolate mono-L-glutamate

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

oxygen

hydrogen sulfide

protoporphyrinogen IX

Mg-protoporphyrin

protoporphyrin IX

uroporphyrinogen-III

protoheme

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

DNA with lesion

2-iminobutanoate

2-iminosuccinate