ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C11802

4'-phosphopantetheine

C1108

acetyl phosphate

C11857

β-nicotinate D-ribonucleotide

C9422

nicotinate adenine dinucleotide

C11760

prephenate

C12274

enol-phenylpyruvate

C873

coproporphyrinogen III

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C13879

(R)-mevalonate diphosphate

C11964

(R)-mevalonate

C13985

(R)-5-phosphomevalonate

C11773

phosphocholine

C11748

pseudouridine 5'-phosphate

C12369

3-dehydroquinate

C1431

3-dehydroshikimate

C11653

shikimate

C11652

shikimate 3-phosphate

C14074

prenyl diphosphate

C12394

6-phospho D-glucono-1,5-lactone

C3656

D-gluconate 6-phosphate

C12218

α-D-glucosamine 1-phosphate

C11479

phosphoenolpyruvate

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C10274

5-amino-6-(5-phospho-D-ribosylamino)uracil

C12029

S-ribosyl-L-homocysteine

C1196

S-methyl-5'-thioadenosine

C13946

5-(methylsulfanyl)-α-D-ribose

C3262

3-methyl-2-oxobutanoate

C3319

4-methyl-2-oxopentanoate

C3417

(S)-3-methyl-2-oxopentanoate

C10349

glycerone phosphate

C11942

6-aminohexanoate linear dimer

C13579

6-aminohexanoate

C12016

(lipoyl)adenylate

C12333

dihydrolipoamide

C11690

S-acetyldihydrolipoamide

C1552

2-(α-hydroxyethyl)thiamine diphosphate

C11604

thiamine diphosphate

C7865

urea

C928

CO2

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C12364

isopentenyl diphosphate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C11539

xanthine

C12162

hydrogen peroxide

C4674

glutathione disulfide

C11543

H2O

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C1010

ammonia

C14102

6-aminohexanoate cyclic dimer

C1149

6-oxohexanoate

C1092

adipate

C352

2-iminoacetate

C12324

autoinducer 2

C13986

pseudouridine

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C3850

5-amino-6-(D-ribitylamino)uracil

C13543

mercuriphenyl acetate

C1002

anthranilate

C11946

N-(5-phosphoribosyl)-anthranilate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C11930

N-acetylglutamyl-phosphate

C11715

quinolinate

C1268

(R)-4'-phosphopantothenate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C12492

1,6-anhydro-N-acetyl-β-muramate

C12494

N-acetyl-D-muramate 6-phosphate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C8399

5-hydroxytryptophol

C8407

5-hydroxyindole acetaldehyde

C423

3-methoxy-4-hydroxyphenylglycolaldehyde

C8344

indole-3-glycol

C8410

indole-3-glycol aldehyde

C12102

isobutanol

C13800

3-methylbutanol

C13801

3-methylbutanal

C13799

2-methylbutanol

C11976

2-methylbutanal

C13798

2-phenylethanol

C1184

5-phospho-β-D-ribosylamine

C3281

5-guanidino-2-oxopentanoate

C11754

propanoyl phosphate

C11606

thiamine phosphate

C1325

4-amino-4-deoxychorismate

C1440

nigerose

C13638

N2-succinyl-L-glutamate 5-semialdehyde

C11869

N2-succinylglutamate

C14179

4-acetamidobutanal

C14137

4-acetamidobutanoate

C13627

DNA without lesion

C14005

prephytoene diphosphate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C3482

dihydroxyacetone

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C9077

(2E,6E)-farnesyl diphosphate

C6043

4-methylphenol

C12247

L-homocysteine

C10799

DNA with lesion

C6624

protoheme

C7666

protoporphyrinogen IX

C7676

protoporphyrin IX

C7658

uroporphyrinogen-III

C7121

oxygen

C7111

Hg0

C8419

sn-glycerol 3-phosphate

C6437

3-phospho-D-glyceroyl-phosphate

C6427

2,3-diphospho-D-glycerate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C2017

α-D-glucosamine 6-phosphate

C2765

1-oleoyl-2-lyso-glycerone phosphate

C6763

(R)-methylmalonate-semialdehyde

C6741

(S)-methylmalonate-semialdehyde

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C6290

(S)-3-hydroxy-isobutanoate

C8958

superoxide

C4734

dimethyl sulfide

C4704

methionol

C4768

3-(methylsulfanyl)propanal

C4678

glutathione

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C1689

trimethyl sulfonium

C7036

hydrogencarbonate

C6097

phosphate

C6093

diphosphate

C4328

ammonium

C4320

H+

C4326

Na+

C11023

Fe2+

C11019

Ca2+

C11005

Zn2+

C11011

Cu2+

C10999

Cd2+

C11009

Mg2+

C11002

Hg2+

C2179

choline

C10301

agmatine

C3548

putrescine

C3576

cadaverine

C11222

sn-glycero-3-phosphoethanolamine

C11221

sn-glycero-3-phosphocholine

C4334

1-oleoyl-2-palmitoyl-phosphatidylglycerol

C7306

5'-deoxy-5'-fluoroadenosine

C7314

5-fluoro-5-deoxy-D-ribose 1-phosphate

C2860

fluoroacetaldehyde

C11509

fluoroacetate

C5546

5'-chloro-5'-deoxyadenosine

C11254

5-chloro-5-deoxyribose 1-phosphate

C11317

6-caprolactam

C8033

5-amino-4-imidazolecarboxyamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C10996

nicotinamide

C4937

3'-dephospho-CoA

C4913

malonyl-CoA

C5314

2-methylacetoacetyl-CoA

C5182

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

C5186

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

C4981

CoA-disulfide

C5298

acetyl-CoA

C5313

2-methylbutanoyl-CoA

C5285

(E)-2-methylcrotonoyl-CoA

C5315

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C5635

oleoyl-CoA

C1177

propanoyl-CoA

C2009

3-oxopentanoyl-CoA

C2008

acetoacetyl-CoA

C2598

D-glucono-1,5-lactone

C10053

FAD

C10052

FMN

C10049

FMNH2

C5392

(S)-NADHX

C5394

(R)-NADHX

C14500

NADH

C14497

NADPH

C4018

NADP+

C4020

NAD+

C10611

(R)-lipoate

C10614

coenzyme A

C10597

7,8-dihydrofolate monoglutamate

C7129

5,6,7,8-tetrahydrofolate

C7134

tetrahydropteroyl tri-L-glutamate

C4599

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C10988

riboflavin

C10982

nicotinate

C10994

thiamine

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C15044

reduced riboflavin

C9454

adenine

C9455

guanine

C7755

2'-deoxyinosine

C7848

2'-deoxyguanosine

C7813

2'-deoxyadenosine

C15091

inosine

C15088

adenosine

C15085

guanosine

C15094

xanthosine

C7785

hypoxanthine

C7743

dAMP

C7840

dGMP

C7751

dGTP

C7783

dATP

C7807

dGDP

C7823

dADP

C7795

GDP

C7757

ADP

C7741

IMP

C7827

GMP

C7809

AMP

C7811

XMP

C7745

GTP

C7844

ATP

C8744

dTMP

C8755

dCMP

C8739

uracil

C8770

dUMP

C8752

dUDP

C8714

UDP

C8733

dCDP

C8732

CDP

C8724

dUTP

C8772

dCTP

C8760

UTP

C8761

CTP

C8764

dTTP

C13346

CDP-choline

C8720

dTDP

C7790

UDP-N-acetyl-α-D-mannosamine

C7780

UDP-α-D-glucose

C8666

UDP-α-D-galactose

C7822

UDP-N-acetyl-α-D-muramate

C8547

UDP-N-acetyl-α-D-mannosaminuronate

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C7444

UDP-N-acetyl-α-D-glucosamine

C2706

uridine

C2702

cytidine

C2519

thymidine

C2523

2'-deoxycytidine

C2527

2'-deoxyuridine

C10601

thymine

C2245

CMP

C2241

UMP

C9540

preQ1

C13354

preQ0

C6829

salicylaldehyde

C7019

benzene

C7139

4-tyrosol

C8490

3-methoxy-4-hydroxyphenylglycol

C3649

benzaldehyde

C3641

(4-hydroxyphenyl)acetaldehyde

C3647

phenylacetaldehyde

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C2763

3,4-dihydroxyphenylglycol

C2758

3,4-dihydroxyphenylglycolaldehyde

C11429

salicylate

C8974

4-aminobenzoate

C8968

benzoate

C3536

L-α-amino-ε-keto-pimelate

C5579

L-serine

C12067

glycine

C5588

L-leucine

C5597

L-alanine

C5609

L-glutamine

C5607

L-glutamate

C5642

L-arginine

C5605

L-histidine

C5584

L-lysine

C5596

L-aspartate

C5573

L-tyrosine

C5643

L-asparagine

C5612

L-cysteine

C5575

L-tryptophan

C2469

L-phenylalanine

C8799

D-alanine

C12073

L-aspartyl-4-phosphate

C14988

N-acetyl-L-citrulline

C15000

N-acetyl-L-ornithine

C14973

N-acetyl-L-glutamate

C12303

L-citrulline

C5571

L-valine

C5603

L-isoleucine

C12231

L-ornithine

C12239

L-aspartate 4-semialdehyde

C12203

S-adenosyl-L-homocysteine

C15292

S-adenosyl-L-methionine

C12245

L-homoserine

C5585

meso-diaminopimelate

C5583

L-methionine

C8950

chorismate

C6443

fumarate

C6186

(S)-lactate

C6185

(R)-lactate

C3308

pyruvate

C11517

acetate

C3421

formate

C3409

octanoate

C13210

oleate

C5001

apo-4'-lycopenoate

C13260

phytenate

C11485

D-gluconate

C3345

3-phenyl-2-oxopropanoate

C3315

3-(4-hydroxyphenyl)pyruvate

C3301

2-oxoglutarate

C3351

glyoxylate

C3086

4-(methylsulfanyl)-2-oxobutanoate

C6090

methylglyoxal

C3500

acetaldehyde

C3485

butan-1-al

C3523

1-propanal

C3494

isobutanal

C3529

1-octanal

C14804

phytenal

C7087

α-D-glucopyranose

C7085

β-D-glucopyranose

C2109

α-D-galactopyranose

C2108

β-D-galactopyranose

C2065

aldehydo-D-ribose

C2061

α-D-ribofuranose

C2062

β-D-ribofuranose

C3449

butan-1-ol

C3450

ethanol

C3447

propan-1-ol

C14807

phytol

C6466

phytosphingosine

C2025

D-erythro-sphinganine

C1871

sphinganine 1-phosphate

C1870

phytosphingosine 1-phosphate

C6241

1-oleoyl-sn-glycerol 3-phosphate

C5639

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

C3117

dioleoyl phosphatidate

C5904

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

C8322

di-trans,octa-cis-undecaprenyl phosphate

C8321

geranyl diphosphate

C5378

geranylgeranyl diphosphate

C1810

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C10874

apo-4'-lycopenal

C10864

all-trans-phytoene

C10862

15-cis-phytoene

C10688

maltotriose

C10689

maltotetraose

C10692

maltoheptaose

C10690

maltopentaose

C10691

maltohexaose

C10693

sucrose

C6917

β-D-cellobiose

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C15288

N-acetylmuramate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C5286

N-acetyl-β-D-glucosamine

C8835

β-D-fructofuranose

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C973

D-ribulose-1,5-bisphosphate

C6673

sucrose 6F-phosphate

C10263

ADP-α-D-glucose

C1015

GDP-α-D-glucose

C1009

GDP-α-D-mannose

C5615

D-glyceraldehyde 3-phosphate

C8811

α-D-glucopyranose 1-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C15289

D-sedoheptulose 7-phosphate

C10340

D-erythrose 4-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C2989

β-D-fructofuranose 6-phosphate

C15303

D-fructose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C6719

β-D-mannopyranose 6-phosphate

C2125

α-D-glucose 6-phosphate

C2123

β-D-glucose 6-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C8704

D-xylulose 5-phosphate

C10604

D-ribulose 5-phosphate

C6715

aldehydo-D-ribose 5-phosphate

C6711

α-D-ribose 5-phosphate

C6709

β-D-ribose 5-phosphate

C2057

α-D-ribose-1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C8813

α-D-mannose 1-phosphate

C10267

pppGpp

C10266

ppGpp

C5552

5'-deoxyadenosine

C10288

adenylo-succinate

C7652

cyclic-AMP

C7643

cyclic-GMP

C4243

β-nicotinamide D-ribonucleotide

C6596

2-iminosuccinate

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C8496

N-acetyl-L-glutaminyl-L-glutamine

C8498

N-acetyl-L-glutaminyl-L-glutamine amide

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine