an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
4-oxoglutaramate
aminoacetone
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
pyruvic oxime
ammonia
pimelate
S-adenosyl-4-methylsulfanyl-2-oxobutanoate
selenodiglutathione
glutathioselenol
S-ribosyl-L-homocysteine
autoinducer 2
1-(methylsulfanyl)xylulose 5-phosphate
5-(methylsulfanyl)-ribulose 1-phosphate
S-methyl-5-thio-α-D-ribose 1-phosphate
2-amino-3-carboxymuconate-6-semialdehyde
dialurate
glutathione disulfide
5-amino-6-(5-phospho-D-ribitylamino)uracil
5-amino-6-(5-phospho-D-ribosylamino)uracil
hydroxypyruvate
4-amino-2-methyl-5-pyrimidinemethanol
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
1,6-anhydro-N-acetyl-β-muramate
formamide
2-(α-hydroxyethyl)thiamine diphosphate
4-pyridoxolactone
(lipoyl)adenylate
butanoyl phosphate
4-imidazolone-5-propanoate
urocanate
N-acetyl-D-galactosamine 6-phosphate
D-galactosamine-6-phosphate
3-deoxy-D-glycero-2,5-hexodiulosonate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
carbon monoxide
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
oxaloacetate
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
α-D-glucosamine 1-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
(S)-3-methyl-2-oxopentanoate
(S)-2-acetolactate
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-2-aceto-2-hydroxybutanoate
citrate
oxalosuccinate
thiamine phosphate
thiamine diphosphate
lipid IVA
carboxynorspermidine
norspermidine
hydrogenobyrinate
hydrogenobyrinate a,c-diamide
(R)-1-amino-2-propanol O-2-phosphate
α-ribazole
5,6-dimethylbenzimidazole
α-ribazole 5'-phosphate
phthalate
2,2'-disulfonyl azobenzene
3-[(4-amino-6-chloro-1,3,5-triazin-2-yl)amino]benzenesulfonate
3-deoxy-α-D-manno-2-octulosonate
(S)-dihydroorotate
N-(5-phosphoribosyl)-anthranilate
anthranilate
2-dehydro-3-deoxy-D-gluconate 6-phosphate
3-methyl-2-oxobutanoate
(2S)-2-isopropylmalate
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
(2S)-2-isopropyl-3-oxosuccinate
4-methyl-2-oxopentanoate
3-ethylmalate
2-oxovalerate
1,4-dihydroxy-2-naphthoate
(S)-2,3,4,5-tetrahydrodipicolinate
2-C-methyl-D-erythritol 4-phosphate
DNA without lesion
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
dihydroxyacetone
hydrogen selenide
O-acetyl-L-serine
histidinal
imidazole acetol-phosphate
nicotinate adenine dinucleotide
adenosine 3',5'-bisphosphate
3'-phosphoadenylyl-sulfate
adenosine 5'-phosphosulfate
adenosine 5'-phosphoselenate
(indol-3-yl)pyruvate
(indol-3 yl)acetyl-CoA
6-phospho D-glucono-1,5-lactone
D-gluconate 6-phosphate
3-phosphooxypyruvate
xanthine
dihydrolipoamide
lipoamide
hydrogen peroxide
2-dehydropantoate
N1-(5-phospho-β-D-ribosyl)glycinamide
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
CDP-glycerol
shikimate 3-phosphate
N-acetyl-D-muramate 6-phosphate
4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate
acetyl phosphate
carbamoyl phosphate
γ-L-glutamyl 5-phosphate
isopentenyl diphosphate
L-canavanine
N-acetyl-L-glutamate 5-semialdehyde
N-acetylglutamyl-phosphate
L-arginino-succinate
O-ureido-L-homoserine
canavaninosuccinate
3-deoxy-D-arabino-heptulosonate 7-phosphate
3-dehydroquinate
β-D-ribosylnicotinate
lipid X
lipid A disaccharide (E. coli)
2-phosphoglycolate
glycolate
(L-threonylcarbamoyl)adenylate
orotidine 5'-phosphate
shikimate
3-dehydroshikimate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
2-dehydro-3-deoxy-D-gluconate
1-deoxy-L-glycero-tetrulose 4-phosphate
L-histidinol phosphate
histidinol
3-deoxy-D-manno-octulosonate 8-phosphate
prenyl diphosphate
5-phospho-β-D-ribosylamine
glycerone phosphate
(R)-pantothenate
4-phosphooxy-L-threonine
3-amino-1-hydroxyacetone 1-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
7-carboxy-7-deazaguanine
hydroxylamine
phosphoenolpyruvate
H2
D-erythro-imidazole-glycerol-phosphate
4'-phosphopantetheine
(R)-4'-phosphopantothenate
(R)-4'-phosphopantothenoyl-L-cysteine
5-amino-6-(D-ribitylamino)uracil
β-nicotinate D-ribonucleotide
quinolinate
4-aminobutanoate
H2O
7,8-diaminopelargonate
pimeloyl-CoA
CO2
8-amino-7-oxononanoate
dethiobiotin
adenine
guanine
hypoxanthine
dAMP
dGMP
dGTP
dATP
dITP
dGDP
dADP
dIDP
ITP
GTP
ATP
IDP
GDP
ADP
XMP
IMP
GMP
AMP
2'-deoxyadenosine
2'-deoxyguanosine
xanthosine
guanosine
inosine
adenosine
7,8-dihydrolumazine
FMN
FAD
riboflavin
FMNH2
FADH2
6,7-dimethyl-8-(1-D-ribityl)lumazine
7,8-dihydroneopterin 3'-phosphate
7,8-dihydroneopterin 2',3'-cyclic phosphate
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydroneopterin
7,8-dihydromonapterin
7,8-dihydropterin
6-(hydroxymethyl)-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate
7,8-dihydropteroate
7,8-dihydrofolate monoglutamate
tetrahydropteroyl tri-L-glutamate
5,6,7,8-tetrahydrofolate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
6-carboxy-5,6,7,8-tetrahydropterin
preQ1
uracil
cobalt-precorrin-3
cobalt-precorrin-7
cobalt-precorrin-8
cobalt-precorrin-6B
cobalt-precorrin-5B
cobalt-precorrin-6A
cobalt-precorrin-4
cobalt-precorrin-5A
precorrin-1
precorrin-2
precorrin-3A
precorrin-5
precorrin-7
precorrin-8x
precorrin-6B
precorrin-3B
precorrin-4
sirohydrochlorin
cobyrinate
cob(I)alamin
adenosylcobalamin
(S)-1-pyrroline-5-carboxylate
dCMP
dTMP
dUMP
orotate
dTDP
dTTP
CDP
dUDP
dUTP
dCDP
dCTP
UDP
UTP
uridine 2'3'-cyclic monophosphate
uridine 3'-monophosphate
cytidine 2',3'-cyclic monophosphate
cytidine-3'-monophosphate
CTP
cytidine
uridine
thymidine
2'-deoxycytidine
2'-deoxyuridine
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
dTDP-N-acetylviosamine
dTDP-α-D-glucose
dTDP-β-L-rhamnose
dTDP-viosamine
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
dTDP-4-dehydro-β-L-rhamnose
UDP-α-D-galactofuranose
UDP-α-D-glucose
UDP-α-D-galactose
UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-mannosamine
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-N-acetyl-α-D-glucosamine 3'-phosphate
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UMP
CMP
1-(5-phospho-β-D-ribosyl)-AMP
adenylo-succinate
1-(5-phospho-β-D-ribosyl)-ATP
adenosine 2',3'-cyclic monophosphate
adenosine 3'-monophosphate
guanosine 2',3'-cyclic monophosphate
guanosine 3'-monophosphate
5'-deoxyadenosine
β-nicotinamide D-ribonucleotide
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
NADP+
NAD+
NADPH
NADH
GDP-α-D-mannose
GDP-4-dehydro-α-D-rhamnose
CMP-3-deoxy-β-D-manno-octulosonate
L-α-amino-ε-keto-pimelate
L-methionine
L-isoleucine
L-tryptophan
L-leucine
L-selenocysteine
L-proline
L-valine
glycine
L-alanine
L-cysteine
L-isoglutamine
L-ornithine
L-tyrosine
L,L-diaminopimelate
L-cystathionine
L-histidine
L-arginine
L-threonine
L-asparagine
L-serine
L-aspartate
L-aspartyl-4-phosphate
L-lysine
L-glutamine
L-glutamate
N-carbamoyl-L-aspartate
formyl-L-isoglutamine
N-formimino-L-glutamate
N-acetyl-L-ornithine
N-acetyl-L-citrulline
L-citrulline
O-succinyl-L-homoserine
L-homoserine
O-phospho-L-homoserine
S-sulfo-L-cysteine
L-homocysteine
L-aspartate 4-semialdehyde
L-glutamate-5-semialdehyde
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
meso-diaminopimelate
β-alanine
D-glutamate
D-alanine
L-2-amino-3-oxobutanoate
L-threonine 3-O-phosphate
3-phospho-L-serine
N-acetyl-L-glutamate
O-acetyl-L-homoserine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
D-alanyl-D-alanine
2-iminobutanoate
2-iminosuccinate
2-iminopropanoate
DNA with lesion
phosphonoacetaldehyde
(2-aminoethyl)phosphonate
cobalt-factor III
cobalt-sirohydrochlorin
adenosyl-cobinamide phosphate
cob(II)yrinate c-monoamide
cob(II)yrinate a,c-diamide
cob(I)yrinate a,c-diamide
cob(I)inamide
adenosylcobinamide
adenosyl-cob(III)yrinate a,c-diamide
adenosylcobyrate
adenosylcobinamide-GDP
adenosylcobalamin 5'-phosphate
uroporphyrinogen-III
hydrogen sulfide
oxygen
sn-glycerol 3-phosphate
(R)-glycerate
3-phospho-D-glyceroyl-phosphate
3-phospho-D-glycerate
2-phospho-D-glycerate
Reactive Blue 5
(2R)-2,3-dihydroxy-3-methylbutanoate
α-D-glucosamine 6-phosphate
1-oleoyl-2-lyso-glycerone phosphate
superoxide
5,10-methenyltetrahydrofolate mono-L-glutamate
preQ0
(R)-lipoate
coenzyme A
(R)-NADHX
(S)-NADHX
demethylmenaquinol-8
menaquinol-8
thiamine
nicotinate
pyridoxamine
pyridoxamine 5'-phosphate
pyridoxine
pyridoxine 5'-phosphate
pyridoxal
pyridoxal 5'-phosphate
K+
H+
ammonium
Co2+
Mg2+
trimethyl sulfonium
selenite
thiosulfate
selenate
selenide
hydrogencarbonate
sulfate
phosphate
triphosphate
diphosphate
S-(hydroxymethyl)glutathione
dimethyl sulfide
glutathione
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
methanethiol
(2Z)-2-aminobut-2-enoate
2-aminoprop-2-enoate
agmatine
spermidine
putrescine
2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
ethanol
methanol
ethylene glycol
(S)-propane-1,2-diol
(R)-propane-1,2-diol
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
5-amino-4-imidazolecarboxyamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
cis-aconitate
D-threo-isocitrate
chorismate
(4S)-4-hydroxy-2-oxoglutarate
fumarate
succinate
(S)-malate
(R)-lactate
propanoate
acetate
formate
pyruvate
butanoate
glyoxylate
2-oxobutanoate
2-oxoglutarate
4-aminobenzoate
D-mannonate
(R)-pantoate
D-tagaturonate
aldehydo-D-galacturonate
diacetyl
methylglyoxal
glycolaldehyde
formaldehyde
acetaldehyde
(R)-lactaldehyde
(S)-lactaldehyde
D-glyceraldehyde
α-D-galactopyranose
β-D-galactopyranose
α-D-glucopyranose
β-D-glucopyranose
α-L-rhamnopyranose
β-L-rhamnopyranose
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
1-(β-D ribofuranosyl)nicotinamide
5-dehydro-4-deoxy-D-glucuronate
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
a peptidoglycan dimer (mycobacteria)
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-link (S. aureus)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
α-D-glucopyranose 1-phosphate
D-glyceraldehyde 3-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
D-erythrose 4-phosphate
4-phospho-D-erythronate
5-phospho-α-D-ribose 1-diphosphate
β-D-fructose 1,6-bisphosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
L-ribulose 5-phosphate
D-ribulose 5-phosphate
aldehydo-D-arabinose 5-phosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-mannopyranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
α-D-galactose 1-phosphate
L-fuculose 1-phosphate
L-rhamnulose 1-phosphate
β-D-fructofuranose 1-phosphate
β-D-glucopyranose 1-phosphate
α-D-mannose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
α-D-ribose-1-phosphate
β-D-fructofuranose
N-acetyl-α-D-mannosamine
N-acetyl-β-D-glucosamine
keto-D-fructose
L-fuculose
L-ribulose
D-xylulose
maltotetraose
maltotriose
maltopentaose
maltoheptaose
maltohexaose
sucrose
D-altronate
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
3'-dephospho-CoA
succinyl-CoA
malonyl-CoA
acetyl-CoA
(S)-malyl-CoA
oleoyl-CoA
propanoyl-CoA
(R)-methylmalonyl-CoA
(S)-methylmalonyl-CoA
mono-trans,octa-cis-decaprenyl diphosphate
trans,octacis-decaprenyl phosphate
(2E,6E)-farnesyl diphosphate
dioleoyl phosphatidate
1-oleoyl-sn-glycerol 3-phosphate
di-trans,octa-cis-undecaprenyl diphosphate
all-trans-octaprenyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
urate
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate