an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
oxaloacetate
(2S)-2-isopropylmalate
3-methyl-2-oxobutanoate
H2O
vanillin
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
thiamine phosphate
core oligosaccharide-lipid A (E. coli K-12 core type)
MLPS
ADP-L-glycero-β-D-manno-heptose
D-erythro-imidazole-glycerol-phosphate
CO2
β-D-ribosylnicotinate
β-nicotinate D-ribonucleotide
lipid A disaccharide (E. coli)
lipid X
prephenate
(indol-3-yl)pyruvate
4-phosphooxy-L-threonine
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
3-phosphooxypyruvate
5-aminolevulinate
(S)-4-amino-5-oxopentanoate
coproporphyrinogen III
DNA without lesion
L-histidinol phosphate
imidazole acetol-phosphate
α-D-galactosyl-diphosphoundecaprenol
N-carbamoylputrescine
isopentenyl diphosphate
preuroporphyrinogen
porphobilinogen
histidinol
histidinal
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
2-oxovalerate
3-ethylmalate
4-methyl-2-oxopentanoate
(2S)-2-isopropyl-3-oxosuccinate
O-acetyl-L-serine
hydrogen selenide
ADP-D-glycero-β-D-manno-heptose
(R)-pantothenate
lipid IVA
3-deoxy-α-D-manno-2-octulosonate
3-deoxy-D-manno-octulosonate 8-phosphate
3-dehydroshikimate
3-dehydroquinate
2-dehydropantoate
2-C-methyl-D-erythritol 4-phosphate
autoinducer 2
S-ribosyl-L-homocysteine
orotidine 5'-phosphate
xanthine
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
(S)-3-methyl-2-oxopentanoate
(R)-2,3-dihydroxy-3-methylpentanoate
glycerone phosphate
nicotinate adenine dinucleotide
5-amino-6-(D-ribitylamino)uracil
4-pyridoxolactone
(R)-4'-phosphopantothenate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
α-D-glucosamine 1-phosphate
2-oleoylglycerol
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
N1-(5-phospho-β-D-ribosyl)glycinamide
(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA
hydrogen peroxide
trimethylamine
trimethylamine N-oxide
(L-threonylcarbamoyl)adenylate
selenophosphate
shikimate 3-phosphate
shikimate
propionamide
(indol-3-yl)acetamide
4-guanidinobutanoate
4-guanidinobutyramide
acrylate
acrylamide
glutathionylspermidine
prenyl diphosphate
5-phospho-β-D-ribosylamine
5-amino-6-(5-phospho-D-ribosylamino)uracil
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
phosphoenolpyruvate
L-canavanine
canavaninosuccinate
L-arginino-succinate
5-enolpyruvoyl-shikimate 3-phosphate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
(S)-dihydroorotate
carbonic acid
4-aminobutanoate
O-ureido-L-homoserine
carbamoyl phosphate
adenosine 5'-phosphoselenate
adenosine 5'-phosphosulfate
H2
glycolate
2-phosphoglycolate
(2Z,4E)-2-hydroxyhexa-2,4-dienedioate
pseudaminate
hydroxylamine
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
L-tartrate
N-(5-phosphoribosyl)-anthranilate
citrate
acetyl phosphate
oxalosuccinate
1,6-anhydro-N-acetyl-β-muramate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
4'-phosphopantetheine
(R)-4'-phosphopantothenoyl-L-cysteine
3-deoxy-D-arabino-heptulosonate 7-phosphate
quinolinate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
thiamine diphosphate
4-amino-2-methyl-5-pyrimidinemethanol
acetoacetate
2-(α-hydroxyethyl)thiamine diphosphate
carbon monoxide
2-amino-3-carboxymuconate-6-semialdehyde
N-acetyl-D-muramate 6-phosphate
succinate semialdehyde
anthranilate
hydroxypyruvate
1-deoxy-L-glycero-tetrulose 4-phosphate
5-amino-6-(5-phospho-D-ribitylamino)uracil
ammonia
3'-phosphoadenylyl-sulfate
glutathione disulfide
glutathioselenol
selenodiglutathione
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
2-iminoacetate
5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate
3-hydroxy-2-methylpyridine-4,5-dicarboxylate
3-hydroxy-2-methylpyridine-5-carboxylate
(2Z)-2-(acetamidomethylene)succinate
D-glycero-β-D-manno-heptose 1-phosphate
D-glycero-β-D-manno-heptose 1,7-bisphosphate
3-amino-1-hydroxyacetone 1-phosphate
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
α-D-galacturonate 1-phosphate
L-gulono-1,4-lactone
L-xylo-hex-3-ulono-1,4-lactone
L-dehydro-ascorbate
(4-hydroxyphenyl)acetate
urea
pyruvic oxime
cyclic-2,3-O-oxalyl-L-threonate
dehydroascorbate (bicyclic form)
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
enol-phenylpyruvate
cyclic- 3,4-O-oxalyl-L-threonate
2,3-dioxo-L-gulonate
bisorganyltrisulfane
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
2-carboxy-L-xylonolactone
2-carboxy-L-threo-pentonate
L-homocysteine
4-methylphenol
D-alanyl-D-alanine
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
L-phenylalanine
L-tryptophan
L-methionine
glycine
L-alanine
L-leucine
L-selenocysteine
L-isoleucine
L-valine
L-cysteine
L-glutamate
L-glutamine
L-serine
L-asparagine
L-lysine
L-tyrosine
L-aspartyl-4-phosphate
L-histidine
L-aspartate
L-cystathionine
L-threonine
L-arginine
L-ornithine
L,L-diaminopimelate
N-carbamoyl-L-aspartate
L-citrulline
S-adenosyl-L-homocysteine
S-adenosyl-L-methionine
L-aspartate 4-semialdehyde
S-sulfo-L-cysteine
O-phospho-L-homoserine
L-homoserine
L-cystine
L-canaline
D-allothreonine
meso-diaminopimelate
S-sulfanyl-L-cysteine
3-phospho-L-serine
O-acetyl-L-homoserine
D-glutamate
D-alanine
D-aspartate
D-threonine
β-alanine
ADP
ATP
AMP
GMP
IMP
XMP
GDP
5'-deoxyadenosine
GTP
5-chloro-5-deoxyribose 1-phosphate
5'-chloro-5'-deoxyadenosine
hypoxanthine
2'-deoxyinosine
2'-deoxyguanosine
2'-deoxyadenosine
adenylo-succinate
1-(5-phospho-β-D-ribosyl)-ATP
cyclic-AMP
ITP
ppGpp
pppGpp
1-(5-phospho-β-D-ribosyl)-AMP
dITP
dIDP
IDP
dGTP
dGDP
dATP
dADP
dGMP
dAMP
GDP-α-D-mannose
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
UDP-α-D-galactose
UDP-α-D-glucose
UDP-α-D-glucuronate
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramate
UDP-2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-4-amino-4,6-dideoxy-N-acetyl-β-L-altrosamine
UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose
UDP-α-D-galacturonate
UDP-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
CMP-3-deoxy-β-D-manno-octulosonate
CMP-pseudaminate
adenine
guanine
uracil
preQ1
NAD+
NADP+
NADH
NADPH
cyclic di-3',5'-guanylate
dTMP
dUMP
dCMP
dUDP
dCDP
dTDP
dUTP
dCTP
dTTP
UDP
CDP
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
β-nicotinamide D-ribonucleotide
CTP
UTP
CMP
UMP
guanosine
inosine
xanthosine
adenosine
cytidine
uridine
5'-deoxy-5'-fluoroadenosine
aldehydo-L-galactonate
L-gulonate
1-(β-D ribofuranosyl)nicotinamide
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose
D-erythrose 4-phosphate
D-sedoheptulose 7-phosphate
5-phospho-α-D-ribose 1-diphosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
4-phospho-D-erythronate
α-D-mannose 1-phosphate
α-D-glucopyranose 1-phosphate
N-acetyl-α-D-glucosamine 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 6-phosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
α-D-mannopyranose 6-phosphate
β-D-mannopyranose 6-phosphate
5-fluoro-5-deoxy-D-ribose 1-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
1-deoxy-D-xylulose 5-phosphate
D-xylulose 5-phosphate
D-ribulose 5-phosphate
aldehydo-D-arabinose 5-phosphate
D-glyceraldehyde 3-phosphate
sucrose 6F-phosphate
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer (mycobacteria)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan with D,D cross-links (mycobacteria)
β-D-fructofuranose
glycolaldehyde
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
N-acetyl-α-D-mannosamine
N-acetyl-β-D-glucosamine
colanic acid
α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA
heptosyl-Kdo2-lipid IVA
heptosyl-Kdo2-lipid A
α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A
α-Kdo-(2→6)-lipid IVA
(heptosyl)2-Kdo2-lipid A
glucosyl-(heptosyl)2-Kdo2-lipid A
glucosyl-(heptosyl)2-Kdo2-lipid A-phosphate
glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate
glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-(glucosyl)2-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-(glucosyl)3-(heptosyl)3-Kdo2-lipid A-bisphosphate
sucrose
aldehydo-D-galacturonate
5-deoxy-dihydrokalafungin
(S)-DNPA
(2E,6E)-farnesyl diphosphate
trans,octacis-decaprenyl phosphate
mono-trans,octa-cis-decaprenyl diphosphate
vanillylamine
3-decaprenyl-4-hydroxybenzoate
3-heptaprenyl-4-hydroxybenzoate
3-hexaprenyl-4-hydroxybenzoate
3-octaprenyl-4-hydroxybenzoate
3-nonaprenyl-4-hydroxybenzoate
di-trans,octa-cis-undecaprenyl phosphate
di-trans,octa-cis-undecaprenyl diphosphate
all-trans-octaprenyl diphosphate
all-trans-decaprenyl diphosphate
all-trans-heptaprenyl diphosphate
all-trans-hexaprenyl diphosphate
all-trans-nonaprenyl diphosphate
1-oleoyl-2-palmitoyl-phosphatidylglycerol
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
dioleoyl phosphatidate
1-palmitoyl-2-linoleoyl-phosphatidylcholine
1-oleoyl-2-lyso-glycerone phosphate
1-linoleoyl-sn-glycero-3-phosphocholine
1-oleoyl-sn-glycerol 3-phosphate
butan-1-ol
ethanol
butan-1-al
acetaldehyde
formaldehyde
diacetyl
4-(methylsulfanyl)-2-oxobutanoate
2-oxoglutarate
pyruvate
5-chloro-4-hydroxy-2-oxopentanoate
2-oxobutanoate
glyoxylate
3-phenyl-2-oxopropanoate
3-(4-hydroxyphenyl)pyruvate
4-aminobenzoate
acetate
(R)-pantoate
orotate
5-chloro-5-deoxy-D-ribonate
aldehydo-D-glucuronate
pristanate
palmitate
octanoate
decanoate
linoleate
oleate
(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate
α-linolenate
phytenate
(15Z)-tetracosenoate
formate
propanoate
(R)-lactate
(2R,3S)-2-methylisocitrate
(R)-glycerate
cis-aconitate
cis-2-methylaconitate
D-threo-isocitrate
chorismate
(3E)-2-oxohex-3-enedioate
fumarate
succinate
(S)-malate
4-hydroxybenzoate
urate
3-demethylubiquinol-9
3-demethylubiquinol-8
3-demethylubiquinol-7
3-demethylubiquinol-10
demethylmenaquinol-8
menaquinol-8
ubiquinol-9
ubiquinol-8
ubiquinol-7
ubiquinol-10
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
preQ0
acrylonitrile
(indole-3-yl)acetonitrile
7,8-dihydroneopterin 3'-triphosphate
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydromonapterin
7,8-dihydroneopterin
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydroneopterin 3'-phosphate
cyclic pyranopterin phosphate
molybdopterin
molybdopterin adenine dinucleotide
7,8-dihydropteroate
7,8-dihydrofolate monoglutamate
5,6,7,8-tetrahydrofolate
tetrahydropteroyl tri-L-glutamate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
MoO2-molybdopterin cofactor
riboflavin
FMN
FAD
6,7-dimethyl-8-(1-D-ribityl)lumazine
cob(I)alamin
nicotinate
nicotinamide
L-ascorbate
thiamine
pyridoxal 5'-phosphate
pyridoxal
pyridoxamine 5'-phosphate
pyridoxamine
pyridoxine 5'-phosphate
pyridoxine
4-pyridoxate
coenzyme A
2-iminopropanoate
2-iminobutanoate
2-iminosuccinate
(R)-NADHX
(S)-NADHX
L-galactono-1,4-lactone
acetyl-CoA
4-hydroxybenzoyl-CoA
succinyl-CoA
malonyl-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
3'-dephospho-CoA
linoleoyl-CoA
α-linolenoyl-CoA
oleoyl-CoA
acetoacetyl-CoA
palmitoyl-CoA
pristanoyl-CoA
octanoyl-CoA
decanoyl-CoA
(Z)-15-tetracosenoyl-CoA
(S)-malyl-CoA
phytenoyl-CoA
(indol-3-yl)acetate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
5-amino-4-imidazolecarboxyamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
acetamide
agmatine
putrescine
spermidine
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
nitrite
nitrate
thiosulfate
hydrogencarbonate
superoxide
selenate
selenite
sulfate
molybdate
selenide
tungstate
phosphate
diphosphate
Fe3+
H+
ammonium
Mg2+
Hg2+
Zn2+
Mo2+
Fe2+
trimethyl sulfonium
dimethyl sulfide
glutathione
3-sulfopyruvate
L-cysteate
4-methyl-5-(2-phosphooxyethyl)thiazole
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
5-(2-hydroxyethyl)-4-methylthiazole
methanethiol
S-sulfanylglutathione
nitric oxide
monodehydroascorbate radical
5,10-methenyltetrahydrofolate mono-L-glutamate
(2R)-2,3-dihydroxy-3-methylbutanoate
3-phospho-D-glyceroyl-phosphate
3-phospho-D-glycerate
2-phospho-D-glycerate
sn-glycerol 3-phosphate
hydrogen sulfide
oxygen
protochlorophyllide a
chlorophyllide a
3,8-divinyl protochlorophyllide a
coproporphyrinogen I
uroporphyrinogen-I
uroporphyrinogen-III
Mg-protoporphyrin
protoporphyrin IX
protoporphyrinogen IX
magnesium-protoporphyrin IX 13-monomethyl ester
protoheme
nitrous oxide
131-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester
131-oxo-magnesium-protoporphyrin IX 13-monomethyl ester
DNA with lesion