an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
anthranilate
quinolinate
N5-carboxyaminoimidazole ribonucleotide
4-amino-2-methyl-5-pyrimidinemethanol
N2-succinyl-L-ornithine
N2-succinyl-L-arginine
hypotaurine
1,6-anhydro-N-acetyl-β-muramate
N-acetyl-D-muramate 6-phosphate
2-(α-hydroxyethyl)thiamine diphosphate
4-maleyl-acetoacetate
homogentisate
7-epicholate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2Z)-2-(acetamidomethylene)succinate
3-hydroxy-2-methylpyridine-5-carboxylate
3-hydroxy-2-methylpyridine-4,5-dicarboxylate
5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate
carbon monoxide
carbonic acid
1-deoxy-L-glycero-tetrulose 4-phosphate
4-pyridoxolactone
vanillin
carboxynorspermidine
norspermidine
4-prenylphlorisobutyrophenone
3-(O-geranylgeranyl)-sn-glycerol 1-phosphate
autoinducer 2
3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate
2-oleoylglycerol
4-fumaryl-acetoacetate
acetoacetate
4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate
2-iminoacetate
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
hydroxylamine
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol
glycolate
DNA without lesion
xanthine
N2-succinyl-L-glutamate 5-semialdehyde
N2-succinylglutamate
4-acetamidobutanal
4-acetamidobutanoate
isochorismate
(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate
hydroxypyruvate
ammonia
5-amino-6-(5-phospho-D-ribitylamino)uracil
5-amino-6-(5-phospho-D-ribosylamino)uracil
orotidine 5'-phosphate
N1-(5-phospho-β-D-ribosyl)glycinamide
N-succinyl-L,L-2,6-diaminopimelate
D-erythro-imidazole-glycerol-phosphate
3-deoxy-D-manno-octulosonate 8-phosphate
hydrogen peroxide
shikimate 3-phosphate
5-enolpyruvoyl-shikimate 3-phosphate
S-methyl-5'-thioadenosine
5-(methylsulfanyl)-α-D-ribose
S-ribosyl-L-homocysteine
8-amino-7-oxononanoate
S-adenosyl-4-methylsulfanyl-2-oxobutanoate
7,8-diaminopelargonate
thiamine phosphate
thiamine diphosphate
dethiobiotin
5-amino-6-(D-ribitylamino)uracil
2-dehydropantoate
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
enol-phenylpyruvate
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
pyruvic oxime
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
H2
hydrogen selenide
O-acetyl-L-serine
2-C-methyl-D-erythritol 4-phosphate
(S)-dihydroorotate
4'-phosphopantetheine
(R)-4'-phosphopantothenoyl-L-cysteine
isopentenyl diphosphate
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
3-deoxy-α-D-manno-2-octulosonate
lipid IVA
nicotinate adenine dinucleotide
(S)-4-amino-5-oxopentanoate
O-ureido-L-homoserine
3-deoxy-D-arabino-heptulosonate 7-phosphate
oxalosuccinate
acetyl phosphate
(S)-2-aceto-2-hydroxybutanoate
(S)-2-acetolactate
3-dehydroquinate
histidinal
histidinol
glycerone phosphate
(2S)-2-isopropyl-3-oxosuccinate
3-ethylmalate
2-oxovalerate
(2S)-2-isopropylmalate
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
N-(5-phosphoribosyl)-anthranilate
(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate
3-phosphooxypyruvate
imidazole acetol-phosphate
L-histidinol phosphate
N-acetyl-L-glutamate 5-semialdehyde
N-acetylglutamyl-phosphate
lipid X
lipid A disaccharide (E. coli)
β-nicotinate D-ribonucleotide
β-D-ribosylnicotinate
γ-L-glutamyl 5-phosphate
5-phospho-β-D-ribosylamine
4-methyl-2-oxopentanoate
preuroporphyrinogen
canavaninosuccinate
L-canavanine
L-arginino-succinate
succinate semialdehyde
4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
citrate
oxaloacetate
(R)-pantothenate
(R)-4'-phosphopantothenate
shikimate
3-dehydroshikimate
prephenate
coproporphyrinogen III
carbamoyl phosphate
5-aminolevulinate
porphobilinogen
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
4-phosphooxy-L-threonine
(2S)-2-amino-3-oxo-4-phosphooxybutanoate
3-amino-1-hydroxyacetone 1-phosphate
CO2
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
(R)-2,3-dihydroxy-3-methylpentanoate
(S)-3-methyl-2-oxopentanoate
3-methyl-2-oxobutanoate
prenyl diphosphate
selenophosphate
phosphoenolpyruvate
α-D-glucosamine 1-phosphate
H2O
4-methylphenol
L-homocysteine
DNA with lesion
ethylphosphate
protoheme
protoporphyrin IX
uroporphyrinogen-I
coproporphyrinogen I
uroporphyrinogen-III
protoporphyrinogen IX
hydrogen sulfide
oxygen
sn-glycerol 1-phosphate
sn-glycerol 3-phosphate
2,3-diphospho-D-glycerate
(R)-glycerate
3-phospho-D-glyceroyl-phosphate
3-phospho-D-glycerate
2-phospho-D-glycerate
(2R)-2,3-dihydroxy-3-methylbutanoate
1-oleoyl-2-lyso-glycerone phosphate
5,10-methenyltetrahydrofolate mono-L-glutamate
2-octaprenylphenol
superoxide
dimethyl sulfide
methanethiol
5-(2-hydroxyethyl)-4-methylthiazole
4-methyl-5-(2-phosphooxyethyl)thiazole
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
2-sulfinoacetaldehyde
L-cysteate
3-sulfopyruvate
ammonium
H+
Mn2+
Co2+
Fe2+
Cu2+
trimethyl sulfonium
molybdate
sulfate
sulfite
hydrogensulfite
thiosulfate
hydrogencarbonate
nitrite
nitrate
selenide
phosphate
triphosphate
diphosphate
(2Z)-2-aminobut-2-enoate
agmatine
1-oleoyl-2-palmitoyl-phosphatidylglycerol
fluoroacetaldehyde
fluoroacetate
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
nicotinamide
3α,7α,12β-trihydroxy-5β-cholan-24-oate
3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate
3-dehydrocholate
isocholate
glycocholate
cholate
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
3'-dephospho-CoA
succinyl-CoA
malonyl-CoA
acetyl-CoA
oleoyl-CoA
(S)-3-hydroxybutanoyl-CoA
propanoyl-CoA
octanoyl-CoA
hexadecanedioyl-CoA
acetoacetyl-CoA
FAD
FMN
(S)-NADHX
(R)-NADHX
NADH
NADPH
NAD+
NADP+
ubiquinol-8
menaquinol-8
demethylmenaquinol-8
3-demethylubiquinol-8
coenzyme A
MoO2-molybdopterin cofactor
guanylyl molybdenum cofactor
7,8-dihydrofolate monoglutamate
tetrahydropteroyl tri-L-glutamate
5,6,7,8-tetrahydrofolate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
nicotinate
riboflavin
thiamine
pyridoxal 5'-phosphate
4-pyridoxate
pyridoxine
pyridoxamine
pyridoxal
pyridoxine 5'-phosphate
menadione
(S)-1-pyrroline-5-carboxylate
6,7-dimethyl-8-(1-D-ribityl)lumazine
7,8-dihydroneopterin 3'-phosphate
7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate
7,8-dihydroneopterin 3'-triphosphate
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydromonapterin
7,8-dihydroneopterin
6-(hydroxymethyl)-7,8-dihydropterin
7,8-dihydropteroate
(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin
adenine
guanine
2'-deoxyadenosine
2'-deoxyguanosine
2'-deoxyinosine
guanosine
inosine
xanthosine
adenosine
hypoxanthine
dAMP
dGMP
dITP
dGTP
dATP
dIDP
dGDP
dADP
IDP
GDP
ADP
GMP
XMP
IMP
AMP
ITP
GTP
ATP
dCMP
orotate
uridine 3'-monophosphate
cytidine-3'-monophosphate
dTDP
dTTP
CTP
UTP
dCTP
dUTP
dUDP
UDP
dCDP
CDP
dUMP
dTMP
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-α-D-glucose
UDP-α-D-galactose
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-N-acetyl-α-D-mannosamine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-mannosaminuronate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
cytidine
uridine
CMP
UMP
preQ1
preQ0
salicylaldehyde
urate
benzaldehyde
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
menadiol
2,3-dihydroxybenzoate
salicylate
benzoate
4-aminobenzoate
chorismate
succinate
L-aspartate
fumarate
(S)-malate
cis-aconitate
D-threo-isocitrate
(R)-lactate
propanoate
acetate
pyruvate
formate
octanoate
oleate
apo-4'-lycopenoate
palmitate
(R)-pantoate
3-phenyl-2-oxopropanoate
3-(4-hydroxyphenyl)pyruvate
glyoxylate
2-oxoglutarate
2-oxobutanoate
L-serine
β-alanine
L-proline
L-leucine
glycine
L-alanine
L-glutamine
D-glutamate
L-glutamate
L-histidine
L-arginine
L-lysine
L-cysteine
L-tyrosine
L-asparagine
L-threonine
L-phenylalanine
L-tryptophan
D-aspartate
D-alanine
L-saccharopine
L-aspartyl-4-phosphate
3-phospho-L-serine
N-acetyl-L-ornithine
N-acetyl-L-methionine
N-acetyl-L-glutamate
N-carbamoyl-L-aspartate
O-acetyl-L-homoserine
L-citrulline
L-valine
L-isoleucine
1-aminocyclopropane-1-carboxylate
S-sulfo-L-cysteine
L-aspartate 4-semialdehyde
L-glutamate-5-semialdehyde
S-adenosyl-L-homocysteine
L-homoserine
O-phospho-L-homoserine
S-adenosyl-L-methionine
L-ornithine
meso-diaminopimelate
L-selenocysteine
L-methionine
L,L-diaminopimelate
diacetyl
glycolaldehyde
1-octanal
acetaldehyde
D-glyceraldehyde
aldehydo-D-ribose
α-D-ribofuranose
β-D-ribofuranose
ethanol
(3R)-linalool
(3S)-linalool
myo-inositol
galactinol
D-galactosylononitol
D-ononitol
1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate
1-oleoyl-sn-glycerol 3-phosphate
1-palmitoyl-sn-glycero-3-phosphocholine
1-(oleoyl)-sn-glycero-3-phosphoethanolamine
1,2-dipalmitoyl-sn-glycero-3-phosphocholine
dioleoyl phosphatidate
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
1-18:1-2-18:1-phosphatidylethanolamine
apo-4'-lycopenal
geranyl diphosphate
mono-trans,octa-cis-decaprenyl diphosphate
trans,octacis-decaprenyl phosphate
(2E,6E)-farnesyl diphosphate
di-trans,octa-cis-undecaprenol
3-octaprenyl-4-hydroxybenzoate
di-trans,octa-cis-undecaprenyl phosphate
geranylgeranyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA
α-Kdo-(2→6)-lipid IVA
phlorisovalerophenone
deoxyhumulone
4-prenylphlorisovalerophenone
deoxycohumulone
vanillylamine
1-(β-D ribofuranosyl)nicotinamide
sucrose
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-glucosamine
β-D-fructofuranose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
a peptidoglycan dimer (mycobacteria)
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
sucrose 6F-phosphate
CMP-3-deoxy-β-D-manno-octulosonate
GDP-α-D-mannose
GDP-α-D-perosamine
GDP-4-dehydro-α-D-rhamnose
D-glyceraldehyde 3-phosphate
α-D-glucopyranose 1-phosphate
4-phospho-D-erythronate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
5-phospho-α-D-ribose 1-diphosphate
β-D-fructose 1,6-bisphosphate
D-fructose 6-phosphate
β-D-fructofuranose 6-phosphate
α-D-mannopyranose 6-phosphate
β-D-mannopyranose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-ribulose 5-phosphate
aldehydo-D-arabinose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
α-D-mannose 1-phosphate
1-(5-phospho-β-D-ribosyl)-AMP
pppGpp
ppGpp
adenosine 3'-monophosphate
guanosine 3'-monophosphate
1-(5-phospho-β-D-ribosyl)-ATP
5'-deoxyadenosine
adenylo-succinate
β-nicotinamide D-ribonucleotide
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA
cyclic di-3',5'-guanylate
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
D-alanyl-D-alanine
2-iminosuccinate
2-iminobutanoate