ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C1010

ammonia

C13702

1-piperideine 6-carboxylate

C13986

pseudouridine

C15181

(S)-5-amino-3-oxohexanoate

C623

(3S,5S)-3,5-diaminohexanoate

C1550

2-amino-3-carboxymuconate-6-semialdehyde

C13546

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

C1108

acetyl phosphate

C12492

1,6-anhydro-N-acetyl-β-muramate

C12494

N-acetyl-D-muramate 6-phosphate

C15156

dialurate

C3350

2-oxoadipate

C1078

(S)-2-amino-6-oxohexanoate

C13851

hydrogenobyrinate

C13850

hydrogenobyrinate a,c-diamide

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C574

2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate

C4883

2-oleoylglycerol

C11826

oxalosuccinate

C13871

L-arogenate

C11754

propanoyl phosphate

C1325

4-amino-4-deoxychorismate

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C1519

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

C13630

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

C15215

(L-threonylcarbamoyl)adenylate

C12192

carbonic acid

C1305

4-fumaryl-acetoacetate

C6361

acetoacetate

C891

citrate

C873

coproporphyrinogen III

C14218

L-β-lysine

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C1538

2-C-methyl-D-erythritol 4-phosphate

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C11604

thiamine diphosphate

C12325

1,4-dihydroxy-2-naphthoate

C11802

4'-phosphopantetheine

C1268

(R)-4'-phosphopantothenate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C11652

shikimate 3-phosphate

C11653

shikimate

C1431

3-dehydroshikimate

C12369

3-dehydroquinate

C15238

5-deoxy-α-ribose 1-phosphate

C1196

S-methyl-5'-thioadenosine

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C638

5-(methylsulfanyl)-ribulose 1-phosphate

C12218

α-D-glucosamine 1-phosphate

C1353

3-phosphooxypyruvate

C11711

(R)-1-amino-2-propanol O-2-phosphate

C12315

5,6-dimethylbenzimidazole

C1036

α-ribazole 5'-phosphate

C1038

α-ribazole

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C11606

thiamine phosphate

C13635

β-D-ribosylnicotinate

C1528

2-dehydropantoate

C11800

(R)-pantothenate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C3319

4-methyl-2-oxopentanoate

C506

3-ethylmalate

C3259

2-oxovalerate

C13417

2-isopropylmaleate

C1530

(2R,3S)-3-isopropylmalate

C1438

(2S)-2-isopropylmalate

C6369

(S)-2-aceto-2-hydroxybutanoate

C6359

(S)-2-acetolactate

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C3417

(S)-3-methyl-2-oxopentanoate

C3262

3-methyl-2-oxobutanoate

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C12848

N5-carboxyaminoimidazole ribonucleotide

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C12390

D-erythro-imidazole-glycerol-phosphate

C12125

imidazole acetol-phosphate

C12044

L-histidinol phosphate

C12178

histidinal

C12176

histidinol

C8333

(indol-3-yl)pyruvate

C11693

(indol-3 yl)acetyl-CoA

C142

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

C9422

nicotinate adenine dinucleotide

C13854

hydrogen selenide

C1633

(R)-1-aminopropan-2-ol

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C3850

5-amino-6-(D-ribitylamino)uracil

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C10274

5-amino-6-(5-phospho-D-ribosylamino)uracil

C11832

orotidine 5'-phosphate

C12352

(S)-dihydroorotate

C6614

O-ureido-L-homoserine

C932

canavaninosuccinate

C933

L-canavanine

C12056

L-arginino-succinate

C12048

γ-L-glutamyl 5-phosphate

C6444

oxaloacetate

C14074

prenyl diphosphate

C12364

isopentenyl diphosphate

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C11748

pseudouridine 5'-phosphate

C11857

β-nicotinate D-ribonucleotide

C12162

hydrogen peroxide

C2191

carbamoyl phosphate

C1184

5-phospho-β-D-ribosylamine

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C1002

anthranilate

C11946

N-(5-phosphoribosyl)-anthranilate

C11479

phosphoenolpyruvate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C11760

prephenate

C12274

enol-phenylpyruvate

C928

CO2

C1102

O-acetyl-L-serine

C10349

glycerone phosphate

C11715

quinolinate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C11930

N-acetylglutamyl-phosphate

C11543

H2O

C12247

L-homocysteine

C11480

phenylacetate

C9821

cobalt-factor III

C9822

cobalt-precorrin-3

C9845

cobalt-sirohydrochlorin

C9837

cobalt-precorrin-7

C9866

cobalt-precorrin-8

C9842

cobalt-precorrin-6B

C9813

cobalt-precorrin-5B

C9818

cobalt-precorrin-6A

C9847

cobalt-precorrin-4

C9871

cobalt-precorrin-5A

C9811

cob(II)yrinate c-monoamide

C9828

cob(II)yrinate a,c-diamide

C9861

cobyrinate

C1218

adenosylcobalamin 5'-phosphate

C9855

adenosyl-cobinamide phosphate

C9830

adenosylcobinamide-GDP

C9800

adenosylcobyrate

C9823

cob(I)yrinate a,c-diamide

C9853

adenosyl-cob(III)yrinate a,c-diamide

C9874

cob(I)alamin

C5221

adenosylcobalamin

C9869

cob(I)inamide

C9807

adenosylcobinamide

C6624

protoheme

C7676

protoporphyrin IX

C7658

uroporphyrinogen-III

C7666

protoporphyrinogen IX

C7118

hydrogen sulfide

C7121

oxygen

C8419

sn-glycerol 3-phosphate

C6430

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

C6426

2-O-(α-D-mannosyl)-D-glycerate

C6427

2,3-diphospho-D-glycerate

C6437

3-phospho-D-glyceroyl-phosphate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C2765

1-oleoyl-2-lyso-glycerone phosphate

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C8958

superoxide

C4734

dimethyl sulfide

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C12587

L-cysteate

C12637

3-sulfopyruvate

C4328

ammonium

C4320

H+

C11023

Fe2+

C11006

Co2+

C1689

trimethyl sulfonium

C7024

thiosulfate

C7036

hydrogencarbonate

C6097

phosphate

C6094

triphosphate

C6093

diphosphate

C6526

(2Z)-2-aminobut-2-enoate

C2179

choline

C11221

sn-glycero-3-phosphocholine

C11222

sn-glycero-3-phosphoethanolamine

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C10996

nicotinamide

C2242

(S)-3-aminobutanoyl-CoA

C5123

2-trans,6-cis-tridecadienoyl-CoA

C5143

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

C5137

(3E)-undec-2-enoyl-CoA

C5135

(3R)-hydroxy-undecanoyl-CoA

C5117

2-trans-6-trans-tridecadienoyl-CoA

C5144

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

C5128

2-trans, 4-trans-undecadienoyl-CoA

C5127

(3R)-hydroxy, 4-trans-undecenoyl-CoA

C5125

2-trans-nonenoyl-CoA

C5133

(3R)-hydroxy-nonanoyl-CoA

C5104

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

C5102

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

C5096

(2E,5E)-dodeca-2,5-dienoyl-CoA

C5092

(3R)-hydroxy-5-trans-dodecenoyl-CoA

C5316

(R)-2-hydroxyglutaryl-CoA

C4927

(E)-glutaconyl-CoA

C5014

phenylacetyl-CoA

C5056

linoleoyl-CoA

C4915

α-linolenoyl-CoA

C5182

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

C5186

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

C4937

3'-dephospho-CoA

C5298

acetyl-CoA

C1337

crotonyl-CoA

C11400

phytenoyl-CoA

C6146

(2E)-octadec-2-enoyl-CoA

C5635

oleoyl-CoA

C5879

(3R)-3-hydroxyoctadecanoyl-CoA

C7168

(Z)-15-tetracosenoyl-CoA

C1175

butanoyl-CoA

C1177

propanoyl-CoA

C14697

decanoyl-CoA

C14677

octanoyl-CoA

C5892

palmitoyl-CoA

C2873

pristanoyl-CoA

C6562

hexadecanedioyl-CoA

C2008

acetoacetyl-CoA

C10049

FMNH2

C10052

FMN

C10053

FAD

C5392

(S)-NADHX

C5394

(R)-NADHX

C14500

NADH

C14497

NADPH

C4020

NAD+

C4018

NADP+

C1672

menaquinol-7

C1864

demethylmenaquinol-13

C1861

demethylmenaquinol-12

C1859

demethylmenaquinol-11

C1856

demethylmenaquinol-10

C1857

demethylmenaquinol-6

C1862

demethylmenaquinol-9

C1860

demethylmenaquinol-7

C1863

demethylmenaquinol-8

C10614

coenzyme A

C10597

7,8-dihydrofolate monoglutamate

C7129

5,6,7,8-tetrahydrofolate

C4599

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C10982

nicotinate

C10988

riboflavin

C4210

pyridoxal 5'-phosphate

C4985

(S)-1-pyrroline-5-carboxylate

C2305

precorrin-1

C2311

precorrin-2

C1705

sirohydrochlorin

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C12708

7,8-dihydroneopterin 3'-phosphate

C12664

7,8-dihydroneopterin

C12730

7,8-dihydroneopterin 3'-triphosphate

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C10609

7,8-dihydropteroate

C9454

adenine

C9455

guanine

C7813

2'-deoxyadenosine

C7848

2'-deoxyguanosine

C15085

guanosine

C15091

inosine

C15094

xanthosine

C15088

adenosine

C7785

hypoxanthine

C7743

dAMP

C7840

dGMP

C7749

dITP

C7751

dGTP

C7783

dATP

C7747

dIDP

C7807

dGDP

C7823

dADP

C7817

IDP

C7795

GDP

C7757

ADP

C7827

GMP

C7811

XMP

C7741

IMP

C7809

AMP

C7759

ITP

C7745

GTP

C7844

ATP

C8755

dCMP

C8764

dTTP

C8772

dCTP

C8724

dUTP

C8752

dUDP

C8714

UDP

C8733

dCDP

C8732

CDP

C8720

dTDP

C8770

dUMP

C8744

dTMP

C11481

orotate

C8739

uracil

C8760

UTP

C8761

CTP

C7780

UDP-α-D-glucose

C7822

UDP-N-acetyl-α-D-muramate

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C7444

UDP-N-acetyl-α-D-glucosamine

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C2702

cytidine

C2706

uridine

C2245

CMP

C2241

UMP

C9540

preQ1

C13354

preQ0

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C8974

4-aminobenzoate

C8950

chorismate

C6442

succinate

C6443

fumarate

C5596

L-aspartate

C2802

(S)-malate

C8549

(1R,2S)-homoisocitrate

C8555

cis-homoaconitate

C8534

cis-aconitate

C8538

(2R)-homocitrate

C8531

D-threo-isocitrate

C6185

(R)-lactate

C3420

propanoate

C11517

acetate

C3421

formate

C3308

pyruvate

C3418

butanoate

C3412

decanoate

C3409

octanoate

C13266

(15Z)-tetracosenoate

C13210

oleate

C6379

linoleate

C10572

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

C10590

α-linolenate

C13260

phytenate

C3383

palmitate

C2774

pristanate

C11482

(R)-pantoate

C3315

3-(4-hydroxyphenyl)pyruvate

C3345

3-phenyl-2-oxopropanoate

C3086

4-(methylsulfanyl)-2-oxobutanoate

C3351

glyoxylate

C3257

2-oxobutanoate

C3301

2-oxoglutarate

C3536

L-α-amino-ε-keto-pimelate

C3530

L-2-aminoadipate

C5579

L-serine

C11435

(R)-β-lysine

C11441

β-alanine

C5597

L-alanine

C5588

L-leucine

C5581

L-proline

C12067

glycine

C5609

L-glutamine

C5607

L-glutamate

C5584

L-lysine

C5605

L-histidine

C5642

L-arginine

C5612

L-cysteine

C5573

L-tyrosine

C5577

L-threonine

C2469

L-phenylalanine

C5575

L-tryptophan

C8799

D-alanine

C12065

L-saccharopine

C12073

L-aspartyl-4-phosphate

C3652

L-threonine 3-O-phosphate

C3402

3-phospho-L-serine

C15000

N-acetyl-L-ornithine

C14976

N-acetyl-L-methionine

C14973

N-acetyl-L-glutamate

C13322

N-carbamoyl-L-aspartate

C12303

L-citrulline

C5571

L-valine

C5603

L-isoleucine

C15292

S-adenosyl-L-methionine

C12203

S-adenosyl-L-homocysteine

C2426

S-sulfo-L-cysteine

C12229

O-phospho-L-homoserine

C12245

L-homoserine

C12239

L-aspartate 4-semialdehyde

C12233

L-glutamate-5-semialdehyde

C12231

L-ornithine

C5585

meso-diaminopimelate

C5592

L-selenocysteine

C5583

L-methionine

C5580

L,L-diaminopimelate

C6090

methylglyoxal

C2040

diacetyl

C2858

glycolaldehyde

C3500

acetaldehyde

C2065

aldehydo-D-ribose

C2062

β-D-ribofuranose

C2061

α-D-ribofuranose

C5639

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

C6241

1-oleoyl-sn-glycerol 3-phosphate

C10025

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

C3117

dioleoyl phosphatidate

C9077

(2E,6E)-farnesyl diphosphate

C5360

all-trans-tridecaprenyl diphosphate

C5380

all-trans-dodecaprenyl diphosphate

C5371

all-trans-undecaprenyl diphosphate

C5364

all-trans-decaprenyl diphosphate

C5368

all-trans-hexaprenyl diphosphate

C15301

all-trans-nonaprenyl diphosphate

C5382

all-trans-heptaprenyl diphosphate

C5383

all-trans-octaprenyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C4086

1-(β-D ribofuranosyl)nicotinamide

C10693

sucrose

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C15288

N-acetylmuramate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C5286

N-acetyl-β-D-glucosamine

C8835

β-D-fructofuranose

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C1009

GDP-α-D-mannose

C5615

D-glyceraldehyde 3-phosphate

C8811

α-D-glucopyranose 1-phosphate

C15289

D-sedoheptulose 7-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C10340

D-erythrose 4-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C10324

D-tagatofuranose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C2989

β-D-fructofuranose 6-phosphate

C6719

β-D-mannopyranose 6-phosphate

C6717

α-D-mannopyranose 6-phosphate

C2123

β-D-glucose 6-phosphate

C2125

α-D-glucose 6-phosphate

C8704

D-xylulose 5-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C10604

D-ribulose 5-phosphate

C6715

aldehydo-D-ribose 5-phosphate

C6709

β-D-ribose 5-phosphate

C6711

α-D-ribose 5-phosphate

C2057

α-D-ribose-1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C8813

α-D-mannose 1-phosphate

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C10267

pppGpp

C10266

ppGpp

C5552

5'-deoxyadenosine

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C10288

adenylo-succinate

C4243

β-nicotinamide D-ribonucleotide

C9444

2-sulfanyl-N6-dimethylallyladenosine37 in tRNA

C9443

2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA

C1817

cyclic di-3',5'-guanylate

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C8496

N-acetyl-L-glutaminyl-L-glutamine

C8498

N-acetyl-L-glutaminyl-L-glutamine amide

C1434

D-alanyl-D-alanine

C6599

2-iminobutanoate

C6596

2-iminosuccinate