an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

pseudouridine

N⁵-carboxyaminoimidazole ribonucleotide

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-(methylsulfanyl)-ribulose 1-phosphate

mercuriphenyl acetate

2-iminoacetate

dialurate

(R)-1-amino-2-propanol O-2-phosphate

tetrachloroethene

chloroethene

2-amino-3-carboxymuconate-6-semialdehyde

trichloroethene

cis-1,2-dichloroethene

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

1,4-dihydroxy-2-naphthoate

(R)-4'-phosphopantothenoyl-L-cysteine

oxalosuccinate

4-amino-4-deoxychorismate

α-ribazole

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

(L-threonylcarbamoyl)adenylate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

1-deoxy-L-glycero-tetrulose 4-phosphate

DNA without lesion

4-fumaryl-acetoacetate

acetoacetate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

coproporphyrinogen III

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

arsenite

4'-phosphopantetheine

2-C-methyl-D-erythritol 4-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

isopentenyl diphosphate

thiamine diphosphate

(R)-4'-phosphopantothenate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

shikimate

3-dehydroshikimate

3-dehydroquinate

5-deoxy-α-ribose 1-phosphate

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

3-phosphooxypyruvate

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

carbon monoxide

prenyl diphosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

2-dehydropantoate

(R)-pantothenate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropylmalate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

L-histidinol phosphate

histidinal

histidinol

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

hydrogen peroxide

pseudouridine 5'-phosphate

nicotinate adenine dinucleotide

hydrogen selenide

H₂

5-amino-6-(D-ribitylamino)uracil

orotidine 5'-phosphate

(S)-dihydroorotate

O-ureido-L-homoserine

canavaninosuccinate

L-canavanine

L-arginino-succinate

γ-L-glutamyl 5-phosphate

oxaloacetate

β-nicotinate D-ribonucleotide

quinolinate

carbamoyl phosphate

5-phospho-β-D-ribosylamine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

anthranilate

N-(5-phosphoribosyl)-anthranilate

phosphoenolpyruvate

3-deoxy-D-arabino-heptulosonate 7-phosphate

prephenate

CO₂

O-acetyl-L-serine

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

H₂O

glycerone phosphate

enol-phenylpyruvate

ammonia

2-oxoglutaramate

superoxide

dimethyl sulfide

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

thiosulfate

hydrogencarbonate

phosphate

triphosphate

diphosphate

chloride

H⁺

ammonium

Fe²⁺

Co²⁺

Hg²⁺

Cu²⁺

trimethyl sulfonium

(2Z)-2-aminobut-2-enoate

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

nicotinamide

ethene

phenylacetate

α-linolenoyl-CoA

linoleoyl-CoA

phenylacetyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

3'-dephospho-CoA

acetyl-CoA

phytenoyl-CoA

oleoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

decanoyl-CoA

octanoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

FAD

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

demethylmenaquinol-8

tetrahydrosarcinapterin

5-methyl-tetrahydrosarcinapterin

coenzyme A

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

nicotinate

thiamine

riboflavin

pyridoxal 5'-phosphate

(S)-1-pyrroline-5-carboxylate

cobalt-precorrin-3

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

precorrin-1

precorrin-2

precorrin-6B

precorrin-7

precorrin-8x

sirohydrochlorin

cobyrinate

cob(I)alamin

adenosylcobalamin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

adenine

guanine

2'-deoxyadenosine

2'-deoxyguanosine

guanosine

adenosine

hypoxanthine

dAMP

dGMP

dIMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

XMP

GMP

IMP

AMP

XTP

ITP

GTP

ATP

dCMP

dCTP

dUTP

dTTP

dUDP

UDP

dCDP

CDP

dTDP

orotate

uracil

UTP

CTP

dUMP

dTMP

UDP-α-D-glucose

dTDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

CMP

UMP

preQ₁

preQ₀

benzene

4-methylphenol

4-aminobenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

(15Z)-tetracosenoate

decanoate

octanoate

oleate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

pristanate

palmitate

(R)-pantoate

acetate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxobutanoate

pyruvate

2-oxoglutarate

glyoxylate

L-cysteine

L-tyrosine

glycine

L-threonine

L-glutamine

L-serine

L-lysine

L-histidine

L-arginine

L-glutamate

L-aspartate

L-phenylalanine

L-tryptophan

D-alanine

L-aspartyl-4-phosphate

2-hydroxy-5-oxoproline

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-citrulline

L-homocysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

S-sulfo-L-cysteine

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

L-ornithine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-leucine

L-proline

L-valine

L-isoleucine

L,L-diaminopimelate

β-alanine

chorismate

fumarate

(S)-malate

(2R)-homocitrate

cis-homoaconitate

D-threo-isocitrate

propanoate

formate

methylglyoxal

diacetyl

glycolaldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-al

acetaldehyde

(S)-lactaldehyde

phytenal

butan-1-ol

ethanol

phytol

1-oleoyl-2-lyso-glycerone phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

(2E,6E)-farnesyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

sucrose

β-D-fructofuranose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose-1-phosphate

L-fuculose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

sucrose 6^F-phosphate

1-(5-phospho-β-D-ribosyl)-ATP

pppGpp

ppGpp

5'-deoxyadenosine

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-AMP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

2-iminobutanoate

2-iminosuccinate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

D-alanyl-D-alanine

DNA with lesion

cobalt-factor III

cobalt-sirohydrochlorin

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

adenosylcobalamin 5'-phosphate

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

adenosylcobyrate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

protoheme

N₂

protoporphyrin IX

uroporphyrinogen-III

protoporphyrinogen IX

Hg⁰

oxygen

hydrogen sulfide

sn-glycerol 3-phosphate

2-O-(α-D-mannosyl)-D-glycerate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

5,10-methenyltetrahydrofolate mono-L-glutamate

1,1,-dichloroethene