an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

CO₂

D-gluconate 6-phosphate

H₂O

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

indole-3-glycol aldehyde

indole-3-glycol

2-methylbutanal

2-methylbutanol

isobutanol

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

3-methylbutanal

3-methylbutanol

2-phenylethanol

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

α-D-glucosamine 1-phosphate

2,5-hexanedione

(2S,5S)-hexanediol

carbamoyl phosphate

5-amino-6-(5-phospho-D-ribosylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(D-ribitylamino)uracil

glycerone phosphate

phosphoenolpyruvate

(S)-2,3,4,5-tetrahydrodipicolinate

oxaloacetate

isopentenyl diphosphate

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

4'-phosphopantetheine

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

γ-L-glutamyl 5-phosphate

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

5-(methylsulfanyl)-ribulose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-deoxy-α-ribose 1-phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

shikimate 3-phosphate

shikimate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

xanthine

lipid A disaccharide (E. coli)

lipid X

lipid IV_A

3-deoxy-α-D-manno-2-octulosonate

3-deoxy-D-manno-octulosonate 8-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

indole-3-ethanol

prenyl diphosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

orotidine 5'-phosphate

(R)-pantothenate

thiamine diphosphate

estrone 3-sulfate

3-β-hydroxyandrost-5-en-17-one 3-sulfate

coproporphyrinogen III

O-acetyl-L-serine

hydrogen selenide

2-phosphoglycolate

dihydroxyacetone

DNA without lesion

(L-threonylcarbamoyl)adenylate

N²-succinylglutamate

N²-succinyl-L-glutamate 5-semialdehyde

4-acetamidobutanoate

4-acetamidobutanal

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

formamide

hydrogen peroxide

(S)-dihydroorotate

1-deoxy-L-glycero-tetrulose 4-phosphate

β-D-ribosylnicotinate

ADP-L-glycero-β-D-manno-heptose

D-glycero-β-D-manno-heptose 1-phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

5-ureidoimidazole-4-carboxylate

5-aminoimidazole-4-carboxylate

4-aminoimidazole

3,5-dihydro-4H-imidazol-4-one

acetyl phosphate

carbon monoxide

2-iminoacetate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-methyl-2-oxobutanoate

1-(methylsulfanyl)xylulose 5-phosphate

4-amino-2-methyl-5-pyrimidinemethanol

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

autoinducer 2

S-ribosyl-L-homocysteine

N⁵-carboxyaminoimidazole ribonucleotide

quinolinate

5-enolpyruvoyl-shikimate 3-phosphate

3-dehydroshikimate

L-arginino-succinate

ammonia

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

2-iminopropanoate

2-iminobutanoate

2-iminosuccinate

L-α-amino-ε-keto-pimelate

L-citrulline

L-aspartate

L-histidine

L-proline

L-alanine

glycine

L-glutamine

L-glutamate

L-asparagine

L-serine

L-leucine

L-threonine

L-arginine

L-tyrosine

L-valine

L-lysine

L-methionine

L-cysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

S-adenosyl-L-homocysteine

L-homocysteine

S-sulfo-L-cysteine

L-homoserine

L-ornithine

meso-diaminopimelate

L-selenocysteine

L,L-diaminopimelate

L-aspartyl-4-phosphate

L-cystathionine

N-carbamoyl-L-aspartate

L-selenomethionine

seleno-L-homocysteine

O-acetyl-L-homoserine

N-formimino-glycine

S-methyl-L-methionine

D-glutamate

D-alanine

D-aspartate

adenylo-succinate

GDP

IMP

GTP

ATP

ADP

dGTP

dGDP

ITP

IDP

dATP

dADP

dITP

dIDP

hypoxanthine

GMP

5'-deoxyadenosine

pppGpp

ppGpp

XMP

2'-deoxyguanosine

AMP

2'-deoxyadenosine

dGMP

dAMP

guanine

adenine

purine

uracil

preQ₁

dTDP

dUDP

dCDP

dTTP

dUTP

dCTP

dUMP

dTMP

dCMP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

UMP

CMP

CDP

UDP

CTP

UTP

NADPH

NADH

NADP⁺

NAD⁺

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine 3'-phosphate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CMP-3-deoxy-β-D-manno-octulosonate

adenosine

inosine

guanosine

xanthosine

2'-deoxyuridine

2'-deoxycytidine

thymidine

uridine

cytidine

orotate

(S)-1-pyrroline-5-carboxylate

7,8-dihydrolumazine

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

6,7-dimethyl-8-(1-D-ribityl)lumazine

riboflavin

FAD

FMN

4-tyrosol

urate

6,8-dihydroxypurine

8-hydroxypurine

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

2,3-dihydroxybenzoate

4-methylphenol

4-aminobenzoate

(indol-3-yl)acetaldehyde

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

3-methoxy-4-hydroxyphenylglycol

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

geranyl diphosphate

apo-4'-lycopenal

apo-4'-lycopenoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

α-Kdo-(2→6)-lipid IV_A

heptosyl-Kdo₂-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

heptosyl-Kdo₂-lipid A

acetyl-CoA

3'-dephospho-CoA

malonyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

2-methylacetoacetyl-CoA

(E)-glutaconyl-CoA

palmitoyl-CoA

propanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

crotonyl-CoA

1-(β-D ribofuranosyl)nicotinamide

aldehydo-D-ribose

β-D-ribopyranose

α-D-ribofuranose

β-D-ribofuranose

β-D-galactopyranose

D-glyceraldehyde

glycolaldehyde

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

N-acetyl-α-D-glucosamine 1-phosphate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

D-sedoheptulose 1,7-bisphosphate

α-D-ribose-1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

β-D-fructofuranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

(S)-lactaldehyde

1-propanal

isobutanal

acetaldehyde

1-octanal

butan-1-al

phytenal

methylglyoxal

acetate

palmitate

phytenate

octanoate

2-oxobutanoate

pyruvate

2-oxoglutarate

glyoxylate

formate

(S)-lactate

(R)-lactate

chorismate

fumarate

(S)-malate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

estrone

3-β-hydroxyandrost-5-en-17-one

ethylene glycol

propan-1-ol

phytol

ethanol

butan-1-ol

spermidine

putrescine

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

3-(methylsulfanyl)propanal

methionol

dimethyl sulfide

methanethiol

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

hydrogencarbonate

thiosulfate

sulfate

phosphate

diphosphate

triphosphate

H⁺

ammonium

Cd²⁺

Mg²⁺

Cu²⁺

Co²⁺

Fe²⁺

trimethyl sulfonium

nicotinate

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine

pyridoxal

pyridoxine

(S)-NADHX

(R)-NADHX

coenzyme A

preQ₀

5,10-methenyltetrahydrofolate mono-L-glutamate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

hydrogen sulfide

oxygen

protoporphyrinogen IX

uroporphyrinogen-III

protoporphyrin IX

protoheme

DNA with lesion