an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(S)-dihydroorotate

H₂O

L-canavanine

α-ribazole

2-dehydro-3-deoxy-D-gluconate 6-phosphate

3-dehydroshikimate

4'-phosphopantetheine

β-D-ribosylnicotinate

shikimate

γ-L-glutamyl 5-phosphate

2-maleylacetate

prephenate

D-gluconate 6-phosphate

prenyl diphosphate

dialurate

formate

(S)-2-aceto-2-hydroxybutanoate

thiamine diphosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

nicotinate adenine dinucleotide

1,2-dihydro-β-NADP

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-enolpyruvoyl-shikimate 3-phosphate

glycerone phosphate

(S)-2-acetolactate

propanoyl phosphate

(R)-2,3-dihydroxy-3-methylpentanoate

histidinol

L-histidinol phosphate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

phosphoenolpyruvate

oxaloacetate

butanoyl phosphate

shikimate 3-phosphate

CO₂

coproporphyrinogen III

S-ribosyl-L-homocysteine

canavaninosuccinate

L-arginino-succinate

β-nicotinate D-ribonucleotide

porphobilinogen

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

O-ureido-L-homoserine

2-iminoacetate

carbon monoxide

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

acetyl phosphate

isopentenyl diphosphate

4-amino-4-deoxychorismate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

imidazole acetol-phosphate

succinate semialdehyde

4-aminobutanoate

3-oxopropanoate

xanthine

O-acetyl-L-serine

thiamine phosphate

H₂

carbamoyl phosphate

oxalosuccinate

citrate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

3-dehydroquinate

(lipoyl)adenylate

histidinal

D-erythro-imidazole-glycerol-phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

hydroxypyruvate

(R)-4'-phosphopantothenoyl-L-cysteine

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

5,6-dimethylbenzimidazole

hydrogenobyrinate a,c-diamide

α-ribazole 5'-phosphate

hydrogenobyrinate

(R)-1-amino-2-propanol O-2-phosphate

preuroporphyrinogen

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

3-methyl-2-oxobutanoate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

3-phosphooxypyruvate

dihydroxyacetone

5-amino-6-(D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

glycolate

3-deoxy-D-arabino-heptulosonate 7-phosphate

urocanate

4-imidazolone-5-propanoate

α-D-glucosamine 1-phosphate

orotidine 5'-phosphate

salicyl alcohol

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

5-phospho-β-D-ribosylamine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

quinolinate

hydrogen peroxide

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

(S)-3-methyl-2-oxopentanoate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

2-dehydro-3-deoxy-D-gluconate

1,6-anhydro-N-acetyl-β-muramate

selenophosphate

DNA without lesion

(R)-4'-phosphopantothenate

(R)-pantothenate

carboxyphosphate

autoinducer 2

7-carboxy-7-deazaguanine

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

urea

N-acetyl-D-muramate 6-phosphate

N-succinyl-L,L-2,6-diaminopimelate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

2-amino-3-carboxymuconate-6-semialdehyde

formamide

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

L-cysteinylglycine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

hypoglycin B

L-α-amino-ε-keto-pimelate

carbamate

L-citrulline

L-tryptophan

L-asparagine

L-leucine

L-aspartate

L-glutamate

L-phenylalanine

L-serine

L-isoleucine

L-arginine

glycine

L-alanine

L-glutamine

L-threonine

L-lysine

L-tyrosine

L-histidine

L-proline

L-valine

L-cysteine

L-methionine

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

L-homocysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

O-phospho-L-homoserine

L-homoserine

L-canaline

L-ornithine

hypoglycin A

meso-diaminopimelate

L-aspartyl-4-phosphate

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

formyl-L-isoglutamine

N-acetyl-L-ornithine

N-formimino-L-glutamate

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

L-threonine 3-O-phosphate

3-phospho-L-serine

L-isoglutamine

L,L-diaminopimelate

D-alanine

D-glutamate

D-aspartate

β-alanine

4-aminobenzoate

acetate

orotate

5-chloro-5-deoxy-D-ribonate

D-mannonate

(S)-1-pyrroline-5-carboxylate

D-tagaturonate

aldehydo-D-galacturonate

butanoate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1,2-dicis-vaccenoyl-phosphatidate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

(R)-lactate

pyruvate

glyoxylate

2-oxobutanoate

2-oxoglutarate

5-chloro-4-hydroxy-2-oxopentanoate

3-phenyl-2-oxopropanoate

D-threo-isocitrate

chorismate

fumarate

succinate

(S)-malate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

geranyl diphosphate

ferrichrome

iron(III) dicitrate

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

(3E)-undec-3-enoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

di-trans,octa-cis-undecaprenyl phosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-O-acetyl-α-maltose

ADP-α-D-glucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

arbutin-6-phosphate

methyl β-D-glucoside 6-phosphate

salicin 6-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

β-D-fructofuranose

β-D-ribopyranose

D-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

glycerol

D-sorbitol 6-phosphate

D-mannitol 1-phosphate

maltopentaose

maltohexaose

maltotetraose

maltoheptaose

maltotriose

hydroquinone

methanol

methylglyoxal

acetaldehyde

diacetyl

urate

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

4-methylphenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

guanine

adenine

XMP

GMP

IMP

AMP

ATP

GTP

ADP

GDP

dADP

dGDP

dGTP

dATP

hypoxanthine

xanthosine

adenosine

inosine

guanosine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

6-carboxy-5,6,7,8-tetrahydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

reduced riboflavin

FMNH₂

riboflavin

FMN

FAD

6,7-dimethyl-8-(1-D-ribityl)lumazine

uracil

thymine

preQ₁

UDP

dTDP

UTP

dTMP

dUDP

CDP

dCDP

CTP

dCMP

dUMP

dCTP

dUTP

dTTP

CMP

UMP

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

adenosylcobalamin

cobyrinate

sirohydrochlorin

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-2

cobalt-precorrin-8

cobalt-precorrin-7

cobalt-precorrin-5B

cobalt-precorrin-5A

precorrin-8x

cobalt-precorrin-3

cobalt-precorrin-6B

precorrin-2

precorrin-1

coenzyme A

(R)-lipoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-AMP

ppGpp

adenylo-succinate

cyclic-AMP

1-(5-phospho-β-D-ribosyl)-ATP

pppGpp

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate

NADP⁺

NAD⁺

NADPH

NADH

two adjacent thymidines in DNA

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

5'-deoxy-5'-fluoroadenosine

(S)-NADHX

(R)-NADHX

nicotinate

thiamine

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxine

pyridoxal 5'-phosphate

pyridoxal

cob(I)alamin

(indol-3-yl)acetate

cholate

glycocholate

3'-dephospho-CoA

acetyl-CoA

isobutanoyl-CoA

succinyl-CoA

(E)-glutaconyl-CoA

(R)-2-hydroxyglutaryl-CoA

CoA-disulfide

malonyl-CoA

oleoyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

cis-vaccenoyl-CoA

propanoyl-CoA

butanoyl-CoA

18-hydroxylinoleoyl-CoA

(2E)-dec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

trans-dienelactone

cis-dienelactone

glutathione

(R)-S-lactoylglutathione

L-cysteate

3-sulfopyruvate

taurine

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

methanethiol

putrescine

spermidine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

molybdate

nitrate

hydrogencarbonate

selenide

chloride

phosphate

triphosphate

diphosphate

Fe³⁺

Mg²⁺

Ni²⁺

Co²⁺

Fe²⁺

Ca²⁺

H⁺

K⁺

ammonium

2-chloroacetate

(indole-3-yl)acetonitrile

preQ₀

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminobutanoate

2-iminosuccinate

hydrogen sulfide

oxygen

Mg-protoporphyrin

protoporphyrinogen IX

uroporphyrinogen-I

protoporphyrin IX

uroporphyrinogen-III

siroheme

protoheme

cobalt-factor III

adenosylcobinamide

cobalt-sirohydrochlorin

adenosylcobinamide-GDP

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

cob(I)yrinate a,c-diamide

adenosyl-cobinamide phosphate

adenosylcobalamin 5'-phosphate

adenosylcobyrate

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

N₂

DNA with lesion