an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

hydrogen peroxide

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

2-iminoacetate

α-D-glucosamine 1-phosphate

nicotinate adenine dinucleotide

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

4-hydroxy-2-nonenal

L-selenocystathionine

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

2-dehydropantoate

histidinal

autoinducer 2

creatinine

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

aminoacetone

α-ribazole

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

2-phosphoglycolate

butanoyl phosphate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

carbonic acid

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(S)-dihydroorotate

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

thiamine diphosphate

histidinol

L-canavanine

selenophosphate

L-tartrate

5-aminopentanoate

dihydrolipoate

glycerone phosphate

(R)-pantothenate

D-erythro-imidazole-glycerol-phosphate

orotidine 5'-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

dihydroxyacetone

ethanolamine

oxaloacetate

citrate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

carbon monoxide

2-C-methyl-D-erythritol 4-phosphate

quinolinate

S-ribosyl-L-homocysteine

β-nicotinate D-ribonucleotide

5-amino-6-(D-ribitylamino)uracil

DNA without lesion

imidazole acetol-phosphate

L-histidinol phosphate

L-arginino-succinate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

(R)-2,3-dihydroxy-3-methylpentanoate

3-phosphooxypyruvate

3-deoxy-D-arabino-heptulosonate 7-phosphate

canavaninosuccinate

thiamine phosphate

O-acetyl-L-serine

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

glycolate

3-dehydroquinate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-oxovalerate

carboxyphosphate

carbamoyl phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

acetyl phosphate

coproporphyrinogen III

CO₂

isopentenyl diphosphate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

phosphoenolpyruvate

5-enolpyruvoyl-shikimate 3-phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

O-ureido-L-homoserine

shikimate 3-phosphate

5-phospho-β-D-ribosylamine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

(2R,4S)-2, 4-diaminopentanoate

(2R)-2-amino-4-oxopentanoate

prenyl diphosphate

urea

N⁶-(D-psicosyl)-L-lysine

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(R)-4'-phosphopantothenate

prephenate

γ-L-glutamyl 5-phosphate

shikimate

3-dehydroshikimate

H₂O

1-deoxy-L-glycero-tetrulose 4-phosphate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

4-methylphenol

L-homocysteine

adenosylcobalamin

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

cobalt-precorrin-4

cobalt-precorrin-5A

cobalt-precorrin-5B

cobalt-precorrin-6A

Mg-protoporphyrin

protoheme

uroporphyrinogen-III

protoporphyrin IX

protoporphyrinogen IX

oxygen

hydrogen sulfide

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

preQ₀

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

5-chloro-4-hydroxy-2-oxopentanoate

5-chloro-5-deoxy-D-ribonate

ammonium

H⁺

Co²⁺

Mo²⁺

Fe²⁺

Mg²⁺

molybdate

selenide

nitrate

hydrogencarbonate

phosphate

diphosphate

triphosphate

chloride

(2E,6E)-farnesyl diphosphate

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

spermidine

putrescine

S-(hydroxymethyl)glutathione

glutathione

methanethiol

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

2-methylacetoacetyl-CoA

3'-dephospho-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

malonyl-CoA

acetyl-CoA

succinyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(3E)-tetradec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

crotonyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-dec-2-enoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

butanoyl-CoA

propanoyl-CoA

lauroyl-CoA

palmitoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

glycocholate

cholate

nicotinate

thiamine

riboflavin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

FAD

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

hypoxanthine

1-(5-phospho-β-D-ribosyl)-ATP

pppGpp

ppGpp

dGDP

dADP

dGMP

dAMP

ITP

dATP

dGTP

2'-deoxyguanosine

cyclic-AMP

IMP

GMP

adenylo-succinate

5'-deoxyadenosine

AMP

GDP

GTP

ATP

ADP

1-(5-phospho-β-D-ribosyl)-AMP

XMP

guanosine

uridine

cytidine

2'-deoxyuridine

2'-deoxycytidine

cyclic di-3',5'-guanylate

5-hydroxy-CMP

5-hydroxy-CTP

dTTP

dCTP

dUTP

UTP

CTP

dTMP

dCMP

dUMP

UMP

CMP

dTDP

dCDP

CDP

UDP

ADP-α-D-glucose

preQ₁

uracil

guanine

adenine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

(R)-lipoate

coenzyme A

molybdopterin

adenylyl molybdenum cofactor

bis(molybdenum cofactor)

bis(guanylyl molybdopterin) cofactor

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

(S)-1-pyrroline-5-carboxylate

precorrin-7

precorrin-8x

precorrin-1

precorrin-5

precorrin-2

precorrin-3A

precorrin-6B

precorrin-6A

precorrin-3B

precorrin-4

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

orotate

diacetyl

methylglyoxal

formaldehyde

butan-1-al

D-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

butan-1-ol

glycerol

maltotriose

raffinose

maltotetraose

stachyose

maltopentaose

maltoheptaose

maltohexaose

sucrose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

D-xylulose

L-ribulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

a mature peptidoglycan_(n) (meso-DAP containing)

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

N⁶-(6-phospho-D-fructosyl)-L-lysine

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

α-D-ribose-1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

chorismate

succinate

fumarate

L-aspartate

(S)-malate

3-phenyl-2-oxopropanoate

pyruvate

glyoxylate

2-oxobutanoate

2-oxoglutarate

acetate

formate

(R)-lactate

laurate

palmitate

(R)-pantoate

carbamate

L-serine

L-cysteine

L-tyrosine

L-threonine

glycine

L-glutamine

L-histidine

L-lysine

L-arginine

L-glutamate

L-methionine

L-valine

L-leucine

L-phenylalanine

L-proline

L-isoleucine

L-alanine

creatine

β-alanine

D-glutamate

D-aspartate

D-proline

D-ornithine

D-alanine

L,L-diaminopimelate

L-cystathionine

L-aspartyl-4-phosphate

L-ornithine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

seleno-L-homocysteine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

sarcosine

N-acetyl-L-glutamate

O-acetyl-L-homoserine

L-citrulline

N⁶-(D-fructosyl)-L-lysine

O-phospho-L-homoserine

L-homoserine

L-canaline

O-succinyl-L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine