ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C1010

ammonia

C12274

enol-phenylpyruvate

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C9431

1,2-dihydro-β-NADP

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C12848

N5-carboxyaminoimidazole ribonucleotide

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C13543

mercuriphenyl acetate

C12492

1,6-anhydro-N-acetyl-β-muramate

C11964

(R)-mevalonate

C13985

(R)-5-phosphomevalonate

C13879

(R)-mevalonate diphosphate

C11800

(R)-pantothenate

C1268

(R)-4'-phosphopantothenate

C11932

N-acetyl-D-galactosamine 6-phosphate

C15282

D-galactosamine-6-phosphate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C12369

3-dehydroquinate

C12494

N-acetyl-D-muramate 6-phosphate

C1538

2-C-methyl-D-erythritol 4-phosphate

C11832

orotidine 5'-phosphate

C12352

(S)-dihydroorotate

C12016

(lipoyl)adenylate

C11604

thiamine diphosphate

C11606

thiamine phosphate

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C1184

5-phospho-β-D-ribosylamine

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C12162

hydrogen peroxide

C11654

selenophosphate

C3482

dihydroxyacetone

C12324

autoinducer 2

C3417

(S)-3-methyl-2-oxopentanoate

C3262

3-methyl-2-oxobutanoate

C9422

nicotinate adenine dinucleotide

C14074

prenyl diphosphate

C1102

O-acetyl-L-serine

C15056

salicyl alcohol

C191

L-selenocystathionine

C12218

α-D-glucosamine 1-phosphate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C10349

glycerone phosphate

C13627

DNA without lesion

C3319

4-methyl-2-oxopentanoate

C11477

(R)-2-hydroxy-4-methylpentanoate

C13635

β-D-ribosylnicotinate

C891

citrate

C1553

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

C232

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

C15283

poly(ribitol phosphate)

C13813

O-D-alanyl-poly(ribitol phosphate)

C2191

carbamoyl phosphate

C14924

carboxyphosphate

C12325

1,4-dihydroxy-2-naphthoate

C1110

N4-(β-N-acetyl-D-glucosaminyl)-L-asparagine

C11934

N-acetyl-β-glucosaminylamine

C11857

β-nicotinate D-ribonucleotide

C14216

3-keto-L-gulonate 6-phosphate

C928

CO2

C1196

S-methyl-5'-thioadenosine

C13946

5-(methylsulfanyl)-α-D-ribose

C12029

S-ribosyl-L-homocysteine

C11802

4'-phosphopantetheine

C4674

glutathione disulfide

C11479

phosphoenolpyruvate

C12364

isopentenyl diphosphate

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C11483

glycolate

C1528

2-dehydropantoate

C12254

ethanolamine

C11539

xanthine

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C6444

oxaloacetate

C1108

acetyl phosphate

C11543

H2O

C6624

protoheme

C7676

protoporphyrin IX

C7118

hydrogen sulfide

C7111

Hg0

C7121

oxygen

C6708

2-iminopropanoate

C11281

2-chloroacetate

C8419

sn-glycerol 3-phosphate

C6437

3-phospho-D-glyceroyl-phosphate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C2017

α-D-glucosamine 6-phosphate

C10799

DNA with lesion

C12247

L-homocysteine

C13354

preQ0

C4960

N-acetyl-β-neuraminate

C7306

5'-deoxy-5'-fluoroadenosine

C7314

5-fluoro-5-deoxy-D-ribose 1-phosphate

C5546

5'-chloro-5'-deoxyadenosine

C11254

5-chloro-5-deoxyribose 1-phosphate

C7864

Fe3+

C4318

K+

C4326

Na+

C4320

H+

C4328

ammonium

C11021

Mn2+

C11023

Fe2+

C11002

Hg2+

C7030

nitrate

C7025

OH-

C8958

superoxide

C7022

selenide

C7036

hydrogencarbonate

C6762

phosphonate

C6097

phosphate

C6094

triphosphate

C6093

diphosphate

C7006

chloride

C8965

hydroxyl radical

C9077

(2E,6E)-farnesyl diphosphate

C11222

sn-glycero-3-phosphoethanolamine

C11220

glycerophosphoglycerol

C11219

glycerophosphoserine

C4334

1-oleoyl-2-palmitoyl-phosphatidylglycerol

C6524

2-aminoprop-2-enoate

C3548

putrescine

C3574

spermidine

C1476

γ-L-glutamyl-[(S)-allyl]-L-cysteine

C2490

S-allyl-L-cysteine

C1461

γ-L-glutamyl-(S)-methyl-L-cysteine

C1464

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

C4716

S-trans-1-propenyl-L-cysteine

C4678

glutathione

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C12587

L-cysteate

C12637

3-sulfopyruvate

C4580

(R)-S-lactoylglutathione

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C5314

2-methylacetoacetyl-CoA

C4901

succinyl-CoA

C4927

(E)-glutaconyl-CoA

C4913

malonyl-CoA

C4937

3'-dephospho-CoA

C5298

acetyl-CoA

C1337

crotonyl-CoA

C10774

(3R)-3-hydroxybutanoyl-CoA

C7356

(3R)-3-hydroxypentanoyl-CoA

C1175

butanoyl-CoA

C1177

propanoyl-CoA

C5892

palmitoyl-CoA

C2008

acetoacetyl-CoA

C2009

3-oxopentanoyl-CoA

C10988

riboflavin

C10994

thiamine

C10982

nicotinate

C7134

tetrahydropteroyl tri-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C10049

FMNH2

C10052

FMN

C5394

(R)-NADHX

C5392

(S)-NADHX

C14500

NADH

C14497

NADPH

C4020

NAD+

C4018

NADP+

C1863

demethylmenaquinol-8

C7649

isoguanine

C7647

8-oxo-dGTP

C7655

8-oxo-GTP

C7840

dGMP

C7743

dAMP

C7759

ITP

C10267

pppGpp

C10266

ppGpp

C7811

XMP

C7827

GMP

C7741

IMP

C7751

dGTP

C7783

dATP

C7813

2'-deoxyadenosine

C7848

2'-deoxyguanosine

C7755

2'-deoxyinosine

C7785

hypoxanthine

C7745

GTP

C10288

adenylo-succinate

C7823

dADP

C7807

dGDP

C7795

GDP

C7809

AMP

C7844

ATP

C7757

ADP

C14491

(R)-NADPHX

C14494

(S)-NADPHX

C15094

xanthosine

C15085

guanosine

C15091

inosine

C15088

adenosine

C2702

cytidine

C2706

uridine

C2523

2'-deoxycytidine

C2527

2'-deoxyuridine

C2519

thymidine

C10284

2-hydroxy-dATP

C10290

5-hydroxy-CTP

C10280

5-hydroxy-CMP

C8764

dTTP

C8772

dCTP

C8724

dUTP

C8760

UTP

C8761

CTP

C8755

dCMP

C8770

dUMP

C8744

dTMP

C2245

CMP

C2241

UMP

C8720

dTDP

C8752

dUDP

C8733

dCDP

C8714

UDP

C8732

CDP

C4243

β-nicotinamide D-ribonucleotide

C10263

ADP-α-D-glucose

C9540

preQ1

C8739

uracil

C10601

thymine

C9455

guanine

C9454

adenine

C7780

UDP-α-D-glucose

C7804

UDP-α-D-galactofuranose

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7824

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

C8666

UDP-α-D-galactose

C7822

UDP-N-acetyl-α-D-muramate

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C7444

UDP-N-acetyl-α-D-glucosamine

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C10611

(R)-lipoate

C10614

coenzyme A

C15044

reduced riboflavin

C11481

orotate

C7019

benzene

C3093

urate

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C2903

hydroquinone

C6090

methylglyoxal

C3485

butan-1-al

C3500

acetaldehyde

C6246

(S)-lactaldehyde

C7087

α-D-glucopyranose

C7085

β-D-glucopyranose

C2108

β-D-galactopyranose

C2109

α-D-galactopyranose

C3449

butan-1-ol

C3448

methanol

C3731

glycerol

C10351

D-ribitol 5-phosphate

C10527

myo-inositol

C13576

1D-myo-inositol 1-monophosphate

C13573

1D-myo-inositol 3-monophosphate

C4086

1-(β-D ribofuranosyl)nicotinamide

C10688

maltotriose

C5727

raffinose

C6899

stachyose

C10689

maltotetraose

C10692

maltoheptaose

C10691

maltohexaose

C10690

maltopentaose

C10693

sucrose

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C15288

N-acetylmuramate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C13570

N-acetyl-β-D-mannosamine

C5286

N-acetyl-β-D-glucosamine

C8835

β-D-fructofuranose

C6154

α-L-fucopyranose

C6153

β-L-fucopyranose

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C11625

1-O-acetyl-α-maltose

C10374

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C10372

a peptidoglycan dimer (S. aureus)

C10379

a peptidoglycan dimer (E. faeciums)

C14591

a peptidoglycan with D,D cross-link (S. aureus)

C14587

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

C13230

a peptidoglycan dimer (meso-diaminopimelate containing)

C13226

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

C13222

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

C361

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

C3122

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C3131

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C6671

N,N'-diacetylchitobiose 6'-phosphate

C6669

N-monoacetylchitobiose 6'-phosphate

C8811

α-D-glucopyranose 1-phosphate

C5615

D-glyceraldehyde 3-phosphate

C10340

D-erythrose 4-phosphate

C15289

D-sedoheptulose 7-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10326

β-D-fructose 1,6-bisphosphate

C10324

D-tagatofuranose 1,6-bisphosphate

C10331

salicin 6-phosphate

C10334

arbutin-6-phosphate

C15303

D-fructose 6-phosphate

C2989

β-D-fructofuranose 6-phosphate

C2125

α-D-glucose 6-phosphate

C2123

β-D-glucose 6-phosphate

C8701

L-xylulose 5-phosphate

C8704

D-xylulose 5-phosphate

C10604

D-ribulose 5-phosphate

C10607

L-ribulose 5-phosphate

C2057

α-D-ribose-1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C8817

L-rhamnulose 1-phosphate

C8815

α-D-galactose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C8669

methyl β-D-glucoside 6-phosphate

C5904

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

C8321

geranyl diphosphate

C9304

trans,octacis-decaprenyl phosphate

C8322

di-trans,octa-cis-undecaprenyl phosphate

C5383

all-trans-octaprenyl diphosphate

C5378

geranylgeranyl diphosphate

C5382

all-trans-heptaprenyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C8033

5-amino-4-imidazolecarboxyamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C3316

(3E)-2-oxohex-3-enedioate

C6442

succinate

C6443

fumarate

C5596

L-aspartate

C3345

3-phenyl-2-oxopropanoate

C3308

pyruvate

C3301

2-oxoglutarate

C11517

acetate

C3421

formate

C6185

(R)-lactate

C3418

butanoate

C3383

palmitate

C11482

(R)-pantoate

C5032

carbamate

C5579

L-serine

C5612

L-cysteine

C5573

L-tyrosine

C5609

L-glutamine

C5577

L-threonine

C12067

glycine

C5607

L-glutamate

C5583

L-methionine

C5603

L-isoleucine

C5588

L-leucine

C5575

L-tryptophan

C5571

L-valine

C5597

L-alanine

C2469

L-phenylalanine

C11441

β-alanine

C8797

D-glutamate

C8799

D-alanine

C5595

L-cystathionine

C12073

L-aspartyl-4-phosphate

C13322

N-carbamoyl-L-aspartate

C12063

seleno-L-homocysteine

C12061

L-selenomethionine

C6936

S-methyl-L-cysteine

C12239

L-aspartate 4-semialdehyde

C12245

L-homoserine

C12227

O-succinyl-L-homoserine

C12229

O-phospho-L-homoserine

C12203

S-adenosyl-L-homocysteine

C15292

S-adenosyl-L-methionine

C5585

meso-diaminopimelate

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C1434

D-alanyl-D-alanine

C6530

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5686

a methyl group