an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

phosphoenolpyruvate

CO₂

oxalosuccinate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

carboxyphosphate

carbamoyl phosphate

oxaloacetate

L-tartrate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

3-dehydroshikimate

shikimate

3-dehydroquinate

L-quinate

N-acetylglutamyl-phosphate

γ-L-glutamyl 5-phosphate

β-nicotinate D-ribonucleotide

glycerone phosphate

quercitrin

butanoyl phosphate

4'-phosphopantetheine

(R)-4'-phosphopantothenoyl-L-cysteine

O-ureido-L-homoserine

(R)-4'-phosphopantothenate

(R)-pantothenate

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

crotonate

DNA without lesion

2-dehydro-3-deoxy-D-gluconate 6-phosphate

β-D-ribosylnicotinate

2-C-methyl-D-erythritol 4-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

orotidine 5'-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

acetyl phosphate

L-histidinol phosphate

imidazole acetol-phosphate

2-dehydro-3-deoxy-D-gluconate

hydrogen peroxide

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

prephenate

isopentenyl diphosphate

prenyl diphosphate

coproporphyrinogen III

glycolate

histidinol

histidinal

D-erythro-imidazole-glycerol-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

xanthine

propanoyl phosphate

(R)-2,3-dihydroxy-3-methylpentanoate

ethanolamine

citrate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

3-methyl-2-oxobutanoate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

L-canavanine

canavaninosuccinate

L-arginino-succinate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

(S)-3-methyl-2-oxopentanoate

3-phosphooxypyruvate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

N-acetyl-L-glutamate 5-semialdehyde

α-D-glucosamine 1-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

nicotinate adenine dinucleotide

O-acetyl-L-serine

(S)-dihydroorotate

quinolinate

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

urea

glutathione disulfide

1,2-dihydro-β-NADP

enol-phenylpyruvate

ammonia

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

carbamate

L-citrulline

L-cysteine

L-methionine

L-phenylalanine

L-tryptophan

L-serine

L-glutamate

L-glutamine

L-alanine

L-aspartate

L-proline

L-lysine

L-valine

glycine

L-histidine

L-leucine

L-threonine

L-tyrosine

L-isoleucine

L-arginine

L-homocysteine

S-adenosyl-L-methionine

L-glutamate-5-semialdehyde

L-canaline

L-ornithine

L-aspartate 4-semialdehyde

L-homoserine

S-adenosyl-L-homocysteine

O-phospho-L-homoserine

O-succinyl-L-homoserine

meso-diaminopimelate

L-aspartyl-4-phosphate

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-cystathionine

D-glutamate

D-alanine

D-aspartate

acetate

orotate

D-mannonate

5-chloro-5-deoxy-D-ribonate

(S)-1-pyrroline-5-carboxylate

D-tagaturonate

aldehydo-D-galacturonate

butanoate

oleate

(R)-lactate

pyruvate

formate

2-oxoglutarate

2-oxobutanoate

5-chloro-4-hydroxy-2-oxopentanoate

3-phenyl-2-oxopropanoate

D-threo-isocitrate

chorismate

fumarate

succinate

(S)-malate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

geranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

CDP-4-dehydro-6-deoxy-α-D-glucose

ADP-α-D-glucose

CDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

p-nitrophenyl-α-L-rhamnopyranoside

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

keto-L-sorbose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

β-L-rhamnopyranose

α-L-rhamnopyranose

β-D-fructofuranose

α-D-galactopyranose

D-glyceraldehyde

keto-L-rhamnulose

D-xylulose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

N-acetyl-β-neuraminate

glycerol

D-sorbitol 6-phosphate

sucrose

stachyose

raffinose

(S)-propane-1,2-diol

ethanol

methanol

methylglyoxal

(S)-lactaldehyde

acetaldehyde

formaldehyde

diacetyl

urate

quercetin

quercetin-3-glucoside

rutin

hesperidin

hesperitin-7-O-β-D-glucoside

prunin

naringin

4-nitrophenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

guanine

adenine

AMP

GMP

XMP

IMP

ATP

GTP

ADP

GDP

dADP

dGDP

dATP

dGTP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

reduced riboflavin

FMNH₂

riboflavin

FMN

uracil

thymine

preQ₁

isoguanine

UDP

CTP

dTMP

dUMP

dCDP

dCMP

CDP

dUTP

UTP

dCTP

dTDP

dTTP

CMP

UMP

uridine

cytidine

2'-deoxyuridine

2'-deoxycytidine

thymidine

cobyrinate

precorrin-8x

cobalt-precorrin-5A

cobalt-precorrin-4

precorrin-4

precorrin-3B

precorrin-3A

precorrin-5

precorrin-6A

precorrin-2

precorrin-1

precorrin-6B

precorrin-7

coenzyme A

5'-deoxyadenosine

ppGpp

pppGpp

1-(5-phospho-β-D-ribosyl)-ATP

adenylo-succinate

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-AMP

8-oxo-GTP

8-oxo-dGTP

β-nicotinamide D-ribonucleotide

5-hydroxy-CTP

2-hydroxy-dATP

cyclic di-3',5'-guanylate

NADP⁺

NAD⁺

NADPH

NADH

5'-deoxy-5'-fluoroadenosine

glycine betaine

(S)-NADHX

(R)-NADHX

nicotinate

acetyl-CoA

2-methylacetoacetyl-CoA

(E)-glutaconyl-CoA

(R)-2-hydroxyglutaryl-CoA

3'-dephospho-CoA

succinyl-CoA

malonyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

propanoyl-CoA

butanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

crotonyl-CoA

glutathione

3-sulfopyruvate

L-cysteate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

methanethiol

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

superoxide

hydroxyl radical

nitrate

hydrogencarbonate

OH^-

chloride

phosphate

diphosphate

triphosphate

Fe³⁺

Zn²⁺

Mg²⁺

Co²⁺

Fe²⁺

ammonium

H⁺

2-chloroacetate

preQ₀

N-acetyl-D-mannosamine 6-phosphate

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminobutanoate

2-iminosuccinate

hydrogen sulfide

oxygen

Mg-protoporphyrin

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

protoheme

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

adenosylcobyrate

adenosyl-cob(III)yrinate a,c-diamide

DNA with lesion